Gene

KWMTBOMO05266

Annotation

PREDICTED:_ribonuclease_P_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr9(-):12259791-12260764      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.375

CDS

ATGTCCAGCAATTGGGGGTTCTGCGATTTATCAATTAGTAAAAACTACGATATCGACAAATTACATATAATTGAGAAACTTGGTTTTAACACGATAGCAATAAACACATGCTTGGAAGAAGGAAGCGATGAACCTAAAAAGAAGAAAAAGAAAGGAGACACTAGAGAGATTAAAGATTTCGTTCCTCCACCGATGGATTTACCAAAAGATAACAATTTTCAAACAAAACTTAACATACTGCAAAGGATTACTATAGAATTTTCAGATTCTGGAATCGTTCATAAATTAAATCGCTCTGAAAATATAAAAAAATATGATATTATAGCTGTTATACCAAAAACATTACAAGCATTTCAGTATGCTTGTAGTTCTATGGATATCGATATTATTAGTTTCGAAACTGAAGGAAGAATACCCTTTAAAGTACATCGTAAACTTTATAAACAAGCTGTAGACAGGGGTATATTTTTTGAAATAATGTACTCCCCTATTATTAGAGATTCCACAGCCCGAAAGAATATAATAAGCAATGCCCATGTTTACCACACTGTGGGGAAATCAAAGAATATAATCCTCACAAGTGGAGCTGACAATCACATGCATATCCGTAGTGTAAATGATATTATAAATTTGGGATTTCTGCTTGGCCTCAATCACAACGAGAGCTTAGAAGTTGTACGCAACAATACACGAAGATTGATTTTGAAAACTGAAGGGAGAAAATGCGGTAAACATTACATGTCATTCAGTCCTATAGAAAATAAAATTAATGAAGATTACTTTGGTATTTTATTTCTTTAA

Protein

MSSNWGFCDLSISKNYDIDKLHIIEKLGFNTIAINTCLEEGSDEPKKKKKKGDTREIKDFVPPPMDLPKDNNFQTKLNILQRITIEFSDSGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMDIDIISFETEGRIPFKVHRKLYKQAVDRGIFFEIMYSPIIRDSTARKNIISNAHVYHTVGKSKNIILTSGADNHMHIRSVNDIINLGFLLGLNHNESLEVVRNNTRRLILKTEGRKCGKHYMSFSPIENKINEDYFGILFL

Uniprot

Q2F655   A0A2H1WQR8   A0A3S2L280   A0A1E1WBY6   A0A194RSH6   A0A0L7LEM4   + More
A0A194QHI1   A0A212F1F0   A0A2J7QYV2   A0A067R653   A0A1B6KHT3   A0A1B6DUH7   A0A1B6HEC6   A0A1B6I7J5   A0A2P8YBX7   A0A0T6AZ78   A0A1B6FRI1   J3JUJ7   N6UAU4   A0A1Y1KGP2   A0A0V0GBI7   A0A034W8S1   A0A1B0DLY4   A0A0K8TZZ0   A0A0N7Z959   R4G861   A0A139WH93   A0A0P5EKS5   A0A0P6E0G4   A0A1L8DXV2   A0A336LWP6   A0A0P5TEB4   A0A146KR35   W8CB35   A0A0A9XDZ7   A0A1S3D7G3   A0A1B0CA20   A0A0N8EHR8   A0A0L0BSE5   A0A182JDM2   A0A1I8MIX0   A0A182PVH7   A0A182K8N1   A0A182NUU6   A0A0A1WEU2   A0A0N7ZIF3   A0A1B0BJJ4   A0A1A9XYK1   A0A1I8P241   A0A1A9WW04   A0A182WHG7   A0A2M4CSU4   A0A2M4CT40   A0A182U0Y9   Q7Q4M1   A0A182F2B6   A0A182VEY8   B3MUB9   B4Q609   A0A182IBX7   B4ICT9   A0A182RRK8   A0A1A9VDS4   A0A3L8D3C0   B4KHF9   T1ISN2   Q9VPM0   A0A026WZP4   B4JBF4   B3N7M3   B0W8S9   A0A182X148   A0A0M3QT99   Q17IV6   A0A1Q3F6E3   A0A182L079   J9K6H3   A0A1V4KJ20   A0A1W4V3L0   B4P2B1   A0A1B0FE31   A0A084VL42   Q29NW0   A7S216   B4MYS3   B4GJN9   C4WVK0   A0A3B0K8M1   B4LU60   U5ETZ7   A0A151NZZ2   A0A182GYS7   A0A218UWJ7   A0A1U8DPE0   A0A3Q2U4F3  

Pubmed

26354079    26227816    22118469    24845553    29403074    22516182    + More
23537049    28004739    25348373    27129103    18362917    19820115    26823975    24495485    25401762    26108605    25315136    25830018    12364791    14747013    17210077    17994087    22936249    30249741    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24508170    17510324    20966253    17550304    24438588    15632085    17615350    22293439    26483478    15592404   

EMBL

DQ311217    ABD36162.1    ODYU01010323    SOQ55347.1    RSAL01000222    RVE44021.1    + More
GDQN01006683    JAT84371.1    KQ459984    KPJ19021.1    JTDY01001387    KOB74003.1    KQ459220    KPJ02901.1    AGBW02010898    OWR47557.1    NEVH01009082    PNF33762.1    KK852860    KDR14828.1    GEBQ01028959    JAT11018.1    GEDC01008003    JAS29295.1    GECU01034711    GECU01008919    JAS72995.1    JAS98787.1    GECU01024790    JAS82916.1    PYGN01000718    PSN41761.1    LJIG01022520    KRT80142.1    GECZ01017156    JAS52613.1    BT126912    AEE61874.1    APGK01042195    KB741002    KB631903    ENN75752.1    ERL87040.1    GEZM01087621    JAV58566.1    GECL01000757    JAP05367.1    GAKP01007848    JAC51104.1    AJVK01036731    GDHF01032287    JAI20027.1    GDKW01001459    JAI55136.1    GAHY01001532    JAA75978.1    KQ971343    KYB27157.1    GDIP01195579    GDIP01146807    JAJ76595.1    GDIQ01071072    JAN23665.1    GFDF01002806    JAV11278.1    UFQT01000240    SSX22240.1    GDIP01131225    GDIP01108799    LRGB01002121    JAL72489.1    KZS09049.1    GDHC01020504    JAP98124.1    GAMC01000814    JAC05742.1    GBHO01025405    GDHC01020054    GDHC01019402    JAG18199.1    JAP98574.1    JAP99226.1    AJWK01003174    GDIQ01025524    JAN69213.1    JRES01001431    KNC22967.1    GBXI01016885    JAC97406.1    GDIP01242313    JAI81088.1    JXJN01015430    GGFL01004157    MBW68335.1    GGFL01004163    MBW68341.1    AAAB01008964    EAA12728.4    CH902624    EDV33448.2    CM000361    CM002910    EDX03193.1    KMY87271.1    APCN01000755    CH480829    EDW45365.1    QOIP01000014    RLU15007.1    CH933807    EDW11223.1    JH431443    AE014134    AY075315    AAF51526.1    AAL68182.1    AGB92345.1    KK107061    EZA61313.1    CH916368    EDW03977.1    CH954177    EDV57199.1    DS231860    EDS39308.1    CP012523    ALC38543.1    CH477236    EAT46637.1    GFDL01011910    JAV23135.1    ABLF02021667    ABLF02021668    LSYS01003057    OPJ84470.1    CM000157    EDW87107.1    CCAG010017914    ATLV01014408    KE524970    KFB38686.1    CH379058    EAL34534.1    DS469567    EDO42157.1    CH963913    EDW77262.1    CH479184    EDW36855.1    AK341552    BAH71920.1    OUUW01000006    SPP81976.1    CH940649    EDW64047.1    GANO01002556    JAB57315.1    AKHW03001467    KYO42323.1    JXUM01098084    KQ564393    KXJ72345.1    MUZQ01000106    OWK58165.1    AADN05000339   

Proteomes

UP000283053    UP000053240    UP000037510    UP000053268    UP000007151    UP000235965    + More
UP000027135    UP000245037    UP000019118    UP000030742    UP000092462    UP000007266    UP000076858    UP000079169    UP000092461    UP000037069    UP000075880    UP000095301    UP000075885    UP000075881    UP000075884    UP000092460    UP000092443    UP000095300    UP000091820    UP000075920    UP000075902    UP000007062    UP000069272    UP000075903    UP000007801    UP000000304    UP000075840    UP000001292    UP000075900    UP000078200    UP000279307    UP000009192    UP000000803    UP000053097    UP000001070    UP000008711    UP000002320    UP000076407    UP000092553    UP000008820    UP000075882    UP000007819    UP000190648    UP000192221    UP000002282    UP000092444    UP000030765    UP000001819    UP000001593    UP000007798    UP000008744    UP000268350    UP000008792    UP000050525    UP000069940    UP000249989    UP000197619    UP000189705    UP000000539   

PRIDE

Q2F655    Q9VPM0   

Pfam

PF01876   RNase_P_p30

Interpro

IPR016195   Pol/histidinol_Pase-like        + More
IPR002738   RNase_P_p30       
IPR018130   Ribosomal_S2_CS       

SUPFAM

SSF89550   SSF89550       

ProteinModelPortal

Q2F655   A0A2H1WQR8   A0A3S2L280   A0A1E1WBY6   A0A194RSH6   A0A0L7LEM4   + More
A0A194QHI1   A0A212F1F0   A0A2J7QYV2   A0A067R653   A0A1B6KHT3   A0A1B6DUH7   A0A1B6HEC6   A0A1B6I7J5   A0A2P8YBX7   A0A0T6AZ78   A0A1B6FRI1   J3JUJ7   N6UAU4   A0A1Y1KGP2   A0A0V0GBI7   A0A034W8S1   A0A1B0DLY4   A0A0K8TZZ0   A0A0N7Z959   R4G861   A0A139WH93   A0A0P5EKS5   A0A0P6E0G4   A0A1L8DXV2   A0A336LWP6   A0A0P5TEB4   A0A146KR35   W8CB35   A0A0A9XDZ7   A0A1S3D7G3   A0A1B0CA20   A0A0N8EHR8   A0A0L0BSE5   A0A182JDM2   A0A1I8MIX0   A0A182PVH7   A0A182K8N1   A0A182NUU6   A0A0A1WEU2   A0A0N7ZIF3   A0A1B0BJJ4   A0A1A9XYK1   A0A1I8P241   A0A1A9WW04   A0A182WHG7   A0A2M4CSU4   A0A2M4CT40   A0A182U0Y9   Q7Q4M1   A0A182F2B6   A0A182VEY8   B3MUB9   B4Q609   A0A182IBX7   B4ICT9   A0A182RRK8   A0A1A9VDS4   A0A3L8D3C0   B4KHF9   T1ISN2   Q9VPM0   A0A026WZP4   B4JBF4   B3N7M3   B0W8S9   A0A182X148   A0A0M3QT99   Q17IV6   A0A1Q3F6E3   A0A182L079   J9K6H3   A0A1V4KJ20   A0A1W4V3L0   B4P2B1   A0A1B0FE31   A0A084VL42   Q29NW0   A7S216   B4MYS3   B4GJN9   C4WVK0   A0A3B0K8M1   B4LU60   U5ETZ7   A0A151NZZ2   A0A182GYS7   A0A218UWJ7   A0A1U8DPE0   A0A3Q2U4F3  

PDB

6AHU     E-value=6.28804e-29,     Score=315

KEGG

693087    K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] | (RefSeq) ribonuclease P

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0004540   GO:0008033   GO:0003723   GO:0090502   GO:0005655   GO:0030681   GO:0004526   GO:0001682   GO:0000172   GO:0005840   GO:0003735   GO:0006412   GO:0003824   GO:0003677   GO:0003887   GO:0005524   GO:0001664   GO:0005525   GO:0016491  

PANTHER

PTHR13031  

Length:

266

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0032

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.01612

outside

1  -  266

 

 

Pi

255.733999

Theta

193.654062

Tajima's D

1.004107

CLR

0

CSRT

0.662116894155292

Interpretation

Uncertain