Gene

KWMTBOMO05265

Pre Gene Modal

BGIBMGA002496

Annotation

PREDICTED:_protein_LMBR1L_[Amyelois_transitella]

Location

Bomo_Chr9(+):12255195-12258937      View in EpiBrowser

Full name

Protein Lilipod      

Location in the cell

PlasmaMembrane   Reliability : 3.015

CDS

ATGGGCTGGGCCGGCGCCACCCTCGAGGCTTTCCTGATCCTATACCTGCACGCGGCGTCGCTCACCGGGCTGAGCGCGCCGCTGCGGGCGCTGCGCGTGCTGCCCCGCGCGCGCCGCACGCCGCTGCCGCGGATCATCGCGCTCGCCGCCGTCATGTTGGCGCACTCCACCGCGCAGCCGCTCCTCGTCAAGATATTAGGTATAACGAATTTCGATTTGCTCGGCGAGTTCGGGCGCATCGAGTGGCTGGGCAACTTCAGGCTAGTGTTGCTGTACAACGCGATATTCGCGGCCACGGTCACGCTGTGTTTGGTCAGCAAGTTCACGGCGAGCGTGCGCCGCGAACTGTACAACAGGTTTAAATGGATGGCTGATTTTTTTAGTGTACCAGAAGATTCAAAAACTGTAATTGATATGTTGAGTATTACGCAACTGCAAGATAGAACCATAGCGCCAGACAAAGCGGAGAATACTGATAAAACTGCCAAAGTCGAAAAATCAGAATGA

Protein

MGWAGATLEAFLILYLHAASLTGLSAPLRALRVLPRARRTPLPRIIALAAVMLAHSTAQPLLVKILGITNFDLLGEFGRIEWLGNFRLVLLYNAIFAATVTLCLVSKFTASVRRELYNRFKWMADFFSVPEDSKTVIDMLSITQLQDRTIAPDKAENTDKTAKVEKSE

Description

Required during oogenesis to promote self-renewal of germline stem cells, probably by enhancing BMP signaling activity.

Similarity

Belongs to the LIMR family.

Keywords

Cell membrane   Complete proteome   Differentiation   Membrane   Oogenesis   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Protein Lilipod

Uniprot

H9IZ11   A0A3S2NN29   A0A212F1E0   A0A194QBV4   A0A0L7LF21   A0A0L7K3V7   + More
A0A2H1WQU7   A0A194RMG5   A0A067RPE4   A0A2J7RAF3   A0A2P8YHI1   D6X3S1   A0A139WB21   A0A023EVE3   A0A182J7T1   A0A182GPX2   A0A182QZ66   A0A2M4BNR2   A0A2M4BPL5   A0A2M4AKA3   V5GR09   T1GAC9   A0A0L8FP41   A0A2M4BLK4   V5I8M1   A0A0K8TMV1   A0A182ME79   B4GPD4   Q16UA7   A0A182L3V4   A0A1L8E2U0   A0A034VPN9   A0A2M4BJ10   A0A087SVS0   A0A084W692   A0A1L8E385   A0A0K8VM98   A0A3R7PPT1   A0A1B0CLH0   B4JIK8   A0A2M4CUX5   A0A2M4BUW1   A0A2M4CV67   W5J515   A0A2M4AEX9   A0A2M4AEQ0   A0A2M4AEX4   A0A2M4ADW3   A0A1Q3FX73   A0A1Q3FX89   A0A2M4BS34   A0A182PIP7   A0A034VJS4   A0A0K8U1Q9   A0A182RJE7   A0A1B0GNP1   A0A182WWC1   A0A182Y833   A0A182I6K0   Q7QII1   A0A0A1X5X5   A0A182U2D9   A0A226E3P4   A0A182K2D1   A0A182WBC5   A0A182VMB5   B4K5I6   A0A1W4W1G3   A0A0A1X4X1   B4LWE0   A0A0M4ESE8   Q9VC35   A0A0B4KGZ8   A0A182FZP5   B4HHK5   B4PV42   B3P6Y5   B3LYA8   A0A1B6CFN2   A0A182N9G5   B4QTS6   A0A2M4AQ35   A0A3B0JLR0   A0A1B6MUE4   A0A0R3NFC4   Q29C08   A0A1S3JU70   A0A023F450   A0A1S3K926   A0A0P5GKF1   A0A069DU90   C3Z9N3   A0A0P5T6W2   W8CB69   A0A0N8CFB2   A0A0P5GN57   A0A0N8CLZ4   B4NGP5   A0A0P5SVX9  

Pubmed

19121390    22118469    26354079    26227816    24845553    29403074    + More
18362917    19820115    24945155    26483478    26369729    17994087    17510324    20966253    25348373    24438588    20920257    23761445    25244985    12364791    14747013    17210077    25830018    10731132    12537572    10731138    26512105    12537568    12537573    12537574    16110336    17569856    17569867    17550304    15632085    25474469    26334808    18563158    24495485   

EMBL

BABH01010869    BABH01010870    RSAL01000222    RVE44020.1    AGBW02010898    OWR47558.1    + More
KQ459220    KPJ02899.1    JTDY01001387    KOB74000.1    JTDY01012037    KOB52338.1    ODYU01010323    SOQ55346.1    KQ459984    KPJ19018.1    KK852505    KDR22505.1    NEVH01006570    PNF37816.1    PYGN01000592    PSN43707.1    KQ971377    EEZ97380.2    KYB25110.1    GAPW01000636    JAC12962.1    JXUM01080388    KQ563182    KXJ74326.1    AXCN02000560    GGFJ01005585    MBW54726.1    GGFJ01005587    MBW54728.1    GGFK01007898    MBW41219.1    GALX01004444    JAB64022.1    CAQQ02390804    KQ428130    KOF66413.1    GGFJ01004819    MBW53960.1    GALX01004445    JAB64021.1    GDAI01002132    JAI15471.1    AXCM01009651    CH479186    EDW39017.1    CH477627    EAT38110.1    GFDF01001047    JAV13037.1    GAKP01015419    GAKP01015413    GAKP01015411    GAKP01015407    GAKP01015405    JAC43533.1    GGFJ01003657    MBW52798.1    KK112177    KFM56959.1    ATLV01020760    ATLV01020761    ATLV01020762    KE525307    KFB45736.1    GFDF01001042    JAV13042.1    GDHF01012639    JAI39675.1    QCYY01002041    ROT73294.1    AJWK01017225    AJWK01017226    CH916369    EDV93089.1    GGFL01004976    MBW69154.1    GGFJ01007663    MBW56804.1    GGFL01004977    MBW69155.1    ADMH02002185    ETN57935.1    GGFK01006014    MBW39335.1    GGFK01005933    MBW39254.1    GGFK01006015    MBW39336.1    GGFK01005648    MBW38969.1    GFDL01002890    JAV32155.1    GFDL01002887    JAV32158.1    GGFJ01006600    MBW55741.1    GAKP01015416    GAKP01015403    GAKP01015401    JAC43551.1    GDHF01031630    JAI20684.1    AJVK01029627    AJVK01029628    APCN01003655    AAAB01008807    EAA04252.3    GBXI01008219    JAD06073.1    LNIX01000007    OXA51521.1    CH933806    EDW14023.1    GBXI01007938    JAD06354.1    CH940650    EDW66577.2    CP012526    ALC47660.1    AE014297    AF132157    BT003212    BT057989    AAD34745.1    AAO24967.1    ACM16699.1    AGB96310.1    CH480815    EDW43547.1    CM000160    EDW98891.1    CH954182    EDV53805.1    CH902617    EDV44012.1    GEDC01025077    JAS12221.1    CM000364    EDX14280.1    GGFK01009585    MBW42906.1    OUUW01000005    SPP81262.1    GEBQ01000458    JAT39519.1    CM000070    KRS99595.1    EAL26838.3    GBBI01002943    JAC15769.1    GDIQ01239296    JAK12429.1    GBGD01001201    JAC87688.1    GG666600    EEN50729.1    GDIP01134553    JAL69161.1    GAMC01005111    JAC01445.1    GDIP01137351    JAL66363.1    GDIQ01239297    GDIP01063953    JAK12428.1    JAM39762.1    GDIP01118695    JAL85019.1    CH964272    EDW84392.1    GDIP01134552    JAL69162.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000037510    UP000053240    + More
UP000027135    UP000235965    UP000245037    UP000007266    UP000075880    UP000069940    UP000249989    UP000075886    UP000015102    UP000053454    UP000075883    UP000008744    UP000008820    UP000075882    UP000054359    UP000030765    UP000283509    UP000092461    UP000001070    UP000000673    UP000075885    UP000075900    UP000092462    UP000076407    UP000076408    UP000075840    UP000007062    UP000075902    UP000198287    UP000075881    UP000075920    UP000075903    UP000009192    UP000192221    UP000008792    UP000092553    UP000000803    UP000069272    UP000001292    UP000002282    UP000008711    UP000007801    UP000075884    UP000000304    UP000268350    UP000001819    UP000085678    UP000001554    UP000007798   

PRIDE

H9IZ11    Q9VC35   

Pfam

PF04791   LMBR1

Interpro

IPR008075   LIMR        + More
IPR006876   LMBR1-like_membr_prot       

ProteinModelPortal

H9IZ11   A0A3S2NN29   A0A212F1E0   A0A194QBV4   A0A0L7LF21   A0A0L7K3V7   + More
A0A2H1WQU7   A0A194RMG5   A0A067RPE4   A0A2J7RAF3   A0A2P8YHI1   D6X3S1   A0A139WB21   A0A023EVE3   A0A182J7T1   A0A182GPX2   A0A182QZ66   A0A2M4BNR2   A0A2M4BPL5   A0A2M4AKA3   V5GR09   T1GAC9   A0A0L8FP41   A0A2M4BLK4   V5I8M1   A0A0K8TMV1   A0A182ME79   B4GPD4   Q16UA7   A0A182L3V4   A0A1L8E2U0   A0A034VPN9   A0A2M4BJ10   A0A087SVS0   A0A084W692   A0A1L8E385   A0A0K8VM98   A0A3R7PPT1   A0A1B0CLH0   B4JIK8   A0A2M4CUX5   A0A2M4BUW1   A0A2M4CV67   W5J515   A0A2M4AEX9   A0A2M4AEQ0   A0A2M4AEX4   A0A2M4ADW3   A0A1Q3FX73   A0A1Q3FX89   A0A2M4BS34   A0A182PIP7   A0A034VJS4   A0A0K8U1Q9   A0A182RJE7   A0A1B0GNP1   A0A182WWC1   A0A182Y833   A0A182I6K0   Q7QII1   A0A0A1X5X5   A0A182U2D9   A0A226E3P4   A0A182K2D1   A0A182WBC5   A0A182VMB5   B4K5I6   A0A1W4W1G3   A0A0A1X4X1   B4LWE0   A0A0M4ESE8   Q9VC35   A0A0B4KGZ8   A0A182FZP5   B4HHK5   B4PV42   B3P6Y5   B3LYA8   A0A1B6CFN2   A0A182N9G5   B4QTS6   A0A2M4AQ35   A0A3B0JLR0   A0A1B6MUE4   A0A0R3NFC4   Q29C08   A0A1S3JU70   A0A023F450   A0A1S3K926   A0A0P5GKF1   A0A069DU90   C3Z9N3   A0A0P5T6W2   W8CB69   A0A0N8CFB2   A0A0P5GN57   A0A0N8CLZ4   B4NGP5   A0A0P5SVX9  

KEGG

101746728    no KO assigned | (RefSeq) protein LMBR1L

GO

GO:0016021   GO:0030513   GO:0048477   GO:0005886  

PANTHER

PTHR12625  

Subcellular location

Cell membrane  

Length:

168

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

65.5896800000002

Exp number, first 60 AAs:

37.58258

Total prob of N-in:

0.02857

POSSIBLE N-term signal

sequence

outside

1  -  9

TMhelix

10  -  28

inside

29  -  40

TMhelix

41  -  63

outside

64  -  82

TMhelix

83  -  105

inside

106  -  168

 

 

Pi

249.794453

Theta

193.634665

Tajima's D

0.810921

CLR

0

CSRT

0.600669966501675

Interpretation

Uncertain