Silkworm Genome Informatics Database

Gene

KWMTBOMO05264

Pre Gene Modal

BGIBMGA002414

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(-):12233511-12235544 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.759

CDS

ATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCAAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTTGGTTCCCTCTGTATTCTGTACCGCATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTCGTCGGAGACTGCGATTCGGCATTACGCCTCAACGAAGACAGCTACAAAGCGCGTCTTTACCTAACAAAGGCTTACAAGGAGTTGGATGAACATGACAAATACGAAACAAGTTTTAATGATTTGGAAAACAAATTTCCACAGCACCGTGACTTGACCGAATACTTCTTGAACAAGAGAGAAAATTTCGAAGAAGACGACGATAATTAA

Protein

MAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVVGDCDSALRLNEDSYKARLYLTKAYKELDEHDKYETSFNDLENKFPQHRDLTEYFLNKRENFEEDDDN

Uniprot

Q5KTM5 Q6UV17 A0A3S2KYN2 A0A3S2LP03 A0A1E1XGQ7 A0A1E1XVB3 + More
W4Y4X9 A0A147BBR8 A0A1E1XMS7 A0A1E1X2R3 A0A0K8RG16 A0A131XQQ3

Pubmed

28503490 29209593 29652888

EMBL

AB126052 BAD86652.1 AY359886 AAQ57129.1 RSAL01000487 RVE41561.1 + More
RSAL01002067 RVE40593.1 GFAC01000919 JAT98269.1 GFAA01000199 JAU03236.1 AAGJ04110620 GEGO01007187 JAR88217.1 GFAA01002794 JAU00641.1 GFAC01005670 JAT93518.1 GADI01003787 JAA70021.1 GEFM01006082 JAP69714.1

Proteomes

UP000283053 UP000007110

PRIDE

Q5KTM5 Q6UV17

Pfam

PF00078 RVT_1 + More
PF14529 Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

Q5KTM5 Q6UV17 A0A3S2KYN2 A0A3S2LP03 A0A1E1XGQ7 A0A1E1XVB3 + More
W4Y4X9 A0A147BBR8 A0A1E1XMS7 A0A1E1X2R3 A0A0K8RG16 A0A131XQQ3

KEGG

101746587 no KO assigned | (RefSeq) tetratricopeptide repeat protein 1-like

GO

GO:0003964 GO:0004519 GO:0005515 GO:0008408 GO:0000166 GO:0003677 GO:0003887 GO:0005524 GO:0001664 GO:0005525 GO:0016491 GO:0003824

Length:

237

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00043

Exp number, first 60 AAs:

0.00043

Total prob of N-in:

0.01347

outside

1 - 237

Pi

40.948677

Theta

139.839928

Tajima's D

-0.412094

CLR

0.28957

CSRT

0.263536823158842

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree