Gene

KWMTBOMO05263

Pre Gene Modal

BGIBMGA002495

Annotation

PREDICTED:_protein_LMBR1L_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr9(+):12223165-12244766      View in EpiBrowser

Full name

Protein Lilipod      

Location in the cell

PlasmaMembrane   Reliability : 4.955

CDS

ATGGATGATGAAGAGGCAGATTTACGGGAACAGATTTTTCATAATAATGTTAGAGAACAAATTATTTTCTTGTTATTATTTATATTGCTGTATCTGATCTCGTTCACGTTGATTGAGAAGTTTCGGAGACGAGACAGCGAAGACTATTTTACAGCAGACGAAGATGAAGTCAAAGTGTACAGGATCAGCTTGTGGCTCTGCACATTTGCCTTGGCAGTGTCCCTGGGCTCGGCACTCCTGCTGCCCGTTTCGATTGTCAGCAATGAAGTGCTCATACTGTACCCAAACAGTTATTATGTAAAATGGCTCAATAGCTCTCTGATACAAGGTCTATGGAATCACGTATTTTTATTTTCAAATCTATCATTGTTTGTTTTCCTACCGTTTGCCTATTTATTTTCGGAGTCGTCCGGATTTCCTGGATGCCGCGGTCTGAAGGGTCGAGTCTACGAAACTTTTATTGTGCTAGCATTGCTCGGCATCGCTATGCTCGGCTTGGCCTATGTCATATCGGCTTGGATAGAAGGAGATCGTTCTGGTGTGGACGCATTATTGAATCTATGGACTTATCTACCGTTCCTCTATTCCTGCGTGTCTTTTGTCGGCGTTTTAATGTTACTAGTTTTCACGCCGCTTGGCTTCGTGCGTCTGTTTGGAGTTGTCGGCGGAGTTCTCGTGAAGCCGCAGTTCCTCAGAGATCTCAACGAGGAGTATTACATGTATTCGTTCGAAGAAGAGACAATCCGACGGCGAATCGACAATGCCGTCGCAACTGAATGA

Protein

MDDEEADLREQIFHNNVREQIIFLLLFILLYLISFTLIEKFRRRDSEDYFTADEDEVKVYRISLWLCTFALAVSLGSALLLPVSIVSNEVLILYPNSYYVKWLNSSLIQGLWNHVFLFSNLSLFVFLPFAYLFSESSGFPGCRGLKGRVYETFIVLALLGIAMLGLAYVISAWIEGDRSGVDALLNLWTYLPFLYSCVSFVGVLMLLVFTPLGFVRLFGVVGGVLVKPQFLRDLNEEYYMYSFEEETIRRRIDNAVATE

Description

Required during oogenesis to promote self-renewal of germline stem cells, probably by enhancing BMP signaling activity.

Similarity

Belongs to the LIMR family.

Keywords

Cell membrane   Complete proteome   Differentiation   Membrane   Oogenesis   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Protein Lilipod

Uniprot

A0A3S2NN29   A0A212F1E0   A0A1E1WKM5   A0A194RMG5   A0A194QBV4   S4PXJ0   + More
A0A1W7R8U3   A0A2H1WJ69   A0A2J7RAF3   A0A087ZQT2   V5I8M1   V5GR09   A0A026WI55   A0A1Q3G2A0   A0A139WB21   Q16UA7   D6X3S1   A0A1Q3FX73   A0A0C9R641   A0A0P6K0Y0   A0A023EVE3   A0A1Q3G2B7   A0A1Y1MNM7   A0A1Q3FX89   A0A151WQ01   F4X5V0   A0A084W692   A0A154PLC9   A0A067RPE4   A0A2M4AQ35   A0A2M4AEX4   A0A034VJS4   A0A2M4AEQ0   A0A2A3EK57   A0A0A1X4X1   A0A2M4ADW3   A0A1L8E385   A0A0K8U1Q9   A0A0K8TMV1   W8CB69   A0A2M4CV67   A0A2M4CUX5   A0A1B0G2Z2   E9IEG0   A0A151JM01   A0A1A9X1P2   A0A336LSQ6   A0A336MNJ6   A0A151JVK9   A0A1B6CFN2   A0A0L7RCA1   A0A195CDY2   A0A1I8NTD7   A0A1I8NTD9   E2B7S6   A0A182QZ66   Q7QII1   A0A1B6MKD5   A0A1I8ME42   A0A1I8ME39   K7IXZ4   A0A1B6IDQ5   A0A336LN84   A0A146M6N0   A0A1B6K5F8   A0A1A9UQW6   B4NGP5   A0A0A9XLD6   A0A0T6B7K0   E2A3U5   A0A1B0BTE7   A0A069DU90   A0A182Y833   A0A182PIP7   A0A182RJE7   A0A182U2D9   A0A182I6K0   A0A182L3V4   A0A182VMB5   A0A182K2D1   A0A2M4BJ10   A0A1A9XK02   A0A1A9ZWR5   A0A023F450   R7U746   A0A1B0CCI3   A0A182FZP5   A0A1S3K926   B4HHK5   B4K5I6   V5H9U6   A0A182J7T1   B4JIK8   A0A1C9TA51   B4LWE0   A0A0B4KGZ8   B3LYA8   Q9VC35   B4QTS6  

Pubmed

22118469    26354079    23622113    24508170    30249741    18362917    + More
19820115    17510324    26999592    24945155    28004739    21719571    24438588    24845553    25348373    25830018    26369729    24495485    21282665    20798317    12364791    14747013    17210077    25315136    20075255    26823975    17994087    25401762    26334808    25244985    20966253    25474469    23254933    25765539    18574105    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    10731138    26512105   

EMBL

RSAL01000222    RVE44020.1    AGBW02010898    OWR47558.1    GDQN01003491    JAT87563.1    + More
KQ459984    KPJ19018.1    KQ459220    KPJ02899.1    GAIX01004953    JAA87607.1    GEHC01000120    JAV47525.1    ODYU01009018    SOQ53111.1    NEVH01006570    PNF37816.1    GALX01004445    JAB64021.1    GALX01004444    JAB64022.1    KK107238    QOIP01000007    EZA54789.1    RLU20537.1    GFDL01001098    JAV33947.1    KQ971377    KYB25110.1    CH477627    EAT38110.1    EEZ97380.2    GFDL01002890    JAV32155.1    GBYB01002241    JAG72008.1    GDUN01000544    JAN95375.1    GAPW01000636    JAC12962.1    GFDL01001101    JAV33944.1    GEZM01026059    GEZM01026058    JAV87269.1    GFDL01002887    JAV32158.1    KQ982865    KYQ49765.1    GL888742    EGI58190.1    ATLV01020760    ATLV01020761    ATLV01020762    KE525307    KFB45736.1    KQ434960    KZC12675.1    KK852505    KDR22505.1    GGFK01009585    MBW42906.1    GGFK01006015    MBW39336.1    GAKP01015416    GAKP01015403    GAKP01015401    JAC43551.1    GGFK01005933    MBW39254.1    KZ288226    PBC31874.1    GBXI01007938    JAD06354.1    GGFK01005648    MBW38969.1    GFDF01001042    JAV13042.1    GDHF01031630    JAI20684.1    GDAI01002132    JAI15471.1    GAMC01005111    JAC01445.1    GGFL01004977    MBW69155.1    GGFL01004976    MBW69154.1    CCAG010003320    GL762591    EFZ21031.1    KQ979011    KYN26637.1    UFQT01000086    SSX19457.1    UFQT01001813    SSX31876.1    KQ981706    KYN37420.1    GEDC01025077    JAS12221.1    KQ414616    KOC68425.1    KQ977957    KYM98446.1    GL446209    EFN88219.1    AXCN02000560    AAAB01008807    EAA04252.3    GEBQ01003540    JAT36437.1    GECU01022652    JAS85054.1    SSX19456.1    GDHC01012665    GDHC01004223    JAQ05964.1    JAQ14406.1    GECU01001010    JAT06697.1    CH964272    EDW84392.1    GBHO01025664    GBHO01025663    JAG17940.1    JAG17941.1    LJIG01009317    KRT83322.1    GL436500    EFN71889.1    JXJN01020099    JXJN01020100    GBGD01001201    JAC87688.1    APCN01003655    GGFJ01003657    MBW52798.1    GBBI01002943    JAC15769.1    AMQN01010248    KB307403    ELT98960.1    AJWK01006813    AJWK01006814    CH480815    EDW43547.1    CH933806    EDW14023.1    GANP01010534    JAB73934.1    CH916369    EDV93089.1    KU553315    AOR07013.1    CH940650    EDW66577.2    AE014297    AGB96310.1    CH902617    EDV44012.1    AF132157    BT003212    BT057989    AAD34745.1    AAO24967.1    ACM16699.1    CM000364    EDX14280.1   

Proteomes

UP000283053    UP000007151    UP000053240    UP000053268    UP000235965    UP000005203    + More
UP000053097    UP000279307    UP000007266    UP000008820    UP000075809    UP000007755    UP000030765    UP000076502    UP000027135    UP000242457    UP000092444    UP000078492    UP000091820    UP000078541    UP000053825    UP000078542    UP000095300    UP000008237    UP000075886    UP000007062    UP000095301    UP000002358    UP000078200    UP000007798    UP000000311    UP000092460    UP000076408    UP000075885    UP000075900    UP000075902    UP000075840    UP000075882    UP000075903    UP000075881    UP000092443    UP000092445    UP000014760    UP000092461    UP000069272    UP000085678    UP000001292    UP000009192    UP000075880    UP000001070    UP000008792    UP000000803    UP000007801    UP000000304   

PRIDE

Q9VC35   

Pfam

PF04791   LMBR1

Interpro

IPR006876   LMBR1-like_membr_prot        + More
IPR008075   LIMR       

ProteinModelPortal

A0A3S2NN29   A0A212F1E0   A0A1E1WKM5   A0A194RMG5   A0A194QBV4   S4PXJ0   + More
A0A1W7R8U3   A0A2H1WJ69   A0A2J7RAF3   A0A087ZQT2   V5I8M1   V5GR09   A0A026WI55   A0A1Q3G2A0   A0A139WB21   Q16UA7   D6X3S1   A0A1Q3FX73   A0A0C9R641   A0A0P6K0Y0   A0A023EVE3   A0A1Q3G2B7   A0A1Y1MNM7   A0A1Q3FX89   A0A151WQ01   F4X5V0   A0A084W692   A0A154PLC9   A0A067RPE4   A0A2M4AQ35   A0A2M4AEX4   A0A034VJS4   A0A2M4AEQ0   A0A2A3EK57   A0A0A1X4X1   A0A2M4ADW3   A0A1L8E385   A0A0K8U1Q9   A0A0K8TMV1   W8CB69   A0A2M4CV67   A0A2M4CUX5   A0A1B0G2Z2   E9IEG0   A0A151JM01   A0A1A9X1P2   A0A336LSQ6   A0A336MNJ6   A0A151JVK9   A0A1B6CFN2   A0A0L7RCA1   A0A195CDY2   A0A1I8NTD7   A0A1I8NTD9   E2B7S6   A0A182QZ66   Q7QII1   A0A1B6MKD5   A0A1I8ME42   A0A1I8ME39   K7IXZ4   A0A1B6IDQ5   A0A336LN84   A0A146M6N0   A0A1B6K5F8   A0A1A9UQW6   B4NGP5   A0A0A9XLD6   A0A0T6B7K0   E2A3U5   A0A1B0BTE7   A0A069DU90   A0A182Y833   A0A182PIP7   A0A182RJE7   A0A182U2D9   A0A182I6K0   A0A182L3V4   A0A182VMB5   A0A182K2D1   A0A2M4BJ10   A0A1A9XK02   A0A1A9ZWR5   A0A023F450   R7U746   A0A1B0CCI3   A0A182FZP5   A0A1S3K926   B4HHK5   B4K5I6   V5H9U6   A0A182J7T1   B4JIK8   A0A1C9TA51   B4LWE0   A0A0B4KGZ8   B3LYA8   Q9VC35   B4QTS6  

KEGG

101746728    no KO assigned | (RefSeq) protein LMBR1L

GO

GO:0016021   GO:0030513   GO:0048477   GO:0005886  

PANTHER

PTHR12625  

Subcellular location

Cell membrane  

Length:

259

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

114.91316

Exp number, first 60 AAs:

19.96132

Total prob of N-in:

0.25222

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  38

outside

39  -  61

TMhelix

62  -  84

inside

85  -  109

TMhelix

110  -  132

outside

133  -  151

TMhelix

152  -  174

inside

175  -  186

TMhelix

187  -  209

outside

210  -  259

 

 

Pi

186.473454

Theta

167.505449

Tajima's D

0.212723

CLR

0.004273

CSRT

0.426228688565572

Interpretation

Uncertain