Silkworm Genome Informatics Database

Gene

KWMTBOMO05256

Pre Gene Modal

BGIBMGA002418

Annotation

PREDICTED:_DNA_polymerase_theta_[Amyelois_transitella]

Location

Bomo_Chr9(-):12148435-12160284 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.259

CDS

ATGTTTGACTGGCAGCTTGCTTGTTTATGTAATACGAAAGTACTTTTTGATTGTGCTAATTTAGTCTATTCAGCTCCCACATCTGCTGGAAAGACACTTGTTGCTGAAATACTTACTATTAAGACAGTATTAGAGCGTCAAAAGAAGGTAATCATCATATTACCATTTGTTTCAATTGTGAGGGAAAAGATGTTTTATTTGCAGAATATTTTATCTAGTTCGGGTATTCGGGTTGAAGGTTTCATGGGTTCACAATCTCCGGCTGGTGGTATGCAAAATGTCCATGTTGCCATTTGTACCATAGAGAAGGCAAACAGTATGATTAACCGTCTTCTTGACAATGGTAATATTGAAGATCTGGGTGCTGTGGTTGTTGATGAATTACACTTACTAGGTGACCAAAATAGAGGCTACATTCTAGAACTGTTGCTAACAAAAATAAAGTATGTAACATCCAAGTCAGACTTACTTATACAAGTTATTGGCATGTCAGCTACATTACCCAATCTAGAAACATTAGCTACTTGGTTGAATGCAGAGCTTTTCATAACTACATTTAGACCTATACCATTAGAAGAGTATTGCCTTGTGGAAAATAAATATTATGATAAAAACGGAAAATATATTTTAGAGGCAAAATCATCCAACTATGGAGTGTCTTGTAATGATAGTGTATTGAAAATTTGCTTAGAAACTATAAAAGAGGGATGTTCAGTTTTGATATTTTGTATGACAAAGAATAGATGTGAGAGTCTAGCCCAGTTATTGTCATCTACTTTTTGTAAAATAGGCTGTGAGGGCAGTGAATTTGGGATGATTTTAAGGAGCCAGTTAAATTCTGAACACATATTGGAAGCTCTGGAACAATTAAAAAACTCTCCTGTTGGGTTAGATCAAATATTGCAAAAGACCATATCATTTGGTGTTGGTTATCACCATGCAGGGTTGACACTCGATGAAAGAGACATTATTGAAGGGGCCTTCAAATCTGGGGCGATAAGAGTTCTAGTAGCAACCTCAACGCTGAGCTCAGGTGTAAATTTGCCTGCTAGAAAAGTCATAATTAGGTCTCCTGTGTTTCAAAAGCAACCCATTAACATATTGTCTTACAAGCAAATGAGTGGTAGGGCAGGAAGAATGGGTAGAGATACTAAAGGTGAGAGCATACTAATTTGTTCTGAGGCAGAGAAGAAAATAGGTTTTAATTTAATGATGGGTGATCTGGACCCGGTTAAGAGTTGCATAGAAACAAAGGAAAAATACATGAGAGCAATACTTGAAATCATTGCTAGCAATATTTCATGTTCAAAGCAAGAACTCCTATTATACACTGATTGCACACTTCTTTCTGCTCAAAAAGAAATCTTATCACAAAATTTGATACTAGAGGACACTTTGAAAGAATTAGAAAATTATGAACTAATTAGAATTCAAAATAATCATAGTGAAAATCACTATGTTGCGACTGCTTTAGGAAAAGCTTGCTTGTCATCTTCAATGGCTCCAAATGATGGATTGACATTATTTTTAACACCATACAGCGTGAGCTCTCAGTGGGGTAATATAGATTGGCTGCATTTATTAAATCTGTGGGAATCTCTAACAAAAGCTATGAAAAAAGTTGGTGAATTGGTAGGAGTACAAGAGAGTTTCATTATCAAATGTTTGAGAGGGCTAAATATGAAGCACCTAGATTCAAACAAATTGAATATTCATAAGAGATTTTACACAGCTCTAGCTTTGCAAGATTTGGTAAATGAAGTGCATCTCTCTGAAGTAGCAAATAAATTTCAATGTGCTCGAGGTTTTTTACAAGGCTTACAGCAAGCATCAGGTACATTTGCAGGCATGGTGACAGCTTTCTGTAAACAGTTGGGATGGAAAAGTATGGAAATCCTTATTTCTCAATTTCAAGACCGATTACATTTCGGAATCCAATCTGAATTGTTAGAATTAATGAAATTATCATCTTTAAATGGTATGAGAGCTAGAACTCTCTTTGATGCAGGTTTTGAGACAATATCTAGCATAGCTATAGCTGATACAGATGCTATAGAAAATGTACTTTTAAAATCAGTGCCATTCGAAAGTGCCAAAGAAAGAGAAAACGATGAAAAAGGCGACATAAAGAAGAGGACCAAAATAAAAAATATATGGATCTCTGGCTGTTGTGGTATGACTATGAGTGAGGCAGCTAAAAATTTAATTAATGAAGCCAGAAAGTGCCTTGAACAAGAAATAGGGGTAAATGAAATAAAGTGGGCTGTTAAAAACGAAAATTCTAGAAATTTTGAACCCAAAAGGATATTAGGATCAGTACCTAATGATAATAAGAATACATGTGATGATAAAAGTCAAAATAACTTAAATGAACAATTTGAGCAAATTAAAGAGAACAGAAATACTTTTAATTCTCAATCCCACCAGTCAATACTTTCTGTTGAAACACATAAATCCAGTTTAAAAACTGAAACAGATGCTATTATAGTAAAAAAAGTAGTCACCCAATTGTTTGAAGATAATGATTGTGCAGATCAATGTGTAAACAATAAAAATGATTTGTCTGTGTTTGTATCTAGTGCAAATGATACAATAAATCAGAAGAGTACATTAATTACAAGTAGTGGTGACATTGTCTGGGATTCTCTTAATTTGACAGAAACAGCTTTAGGGAATATAGCAAGGCTTCAGACTCCTTACAAACTACCCAAATCATGTTTAAGCGATGAAGATTTGGCAGCAACTACAACCAATAACATTAAGAACTCTGTGACATCAAGAAATACCTCAGAGAAGGACATAAGTTTATTTTCGTCTGATGGTGACAATTCAAGTTTATTTGAAGATAGTTTACCTTTGGATTTGATTCCAAGCAAACTACTCCAAGATGTTGAAACTCCGAATAAAAGAGAGCAGTTAGAGGATTTTTACAAAATAAAGTCTAGTAATGGTCTAGAAGAATTGACTGAGTCAGATGAAGTTGAAGAAATGAAATTAGTGTATGAGGAAGACCAAGCTGATAAAACCAATGAAGTCAAGAATTCAATAAAAGACAAACCTTTACAACTTTTCAAAAGTCCCATTAAGAGATGTTGTGAAACTGATAGCATACAGACTGTGATAAAGAAGATCAAAGTTGATGTAAAAACAAATATTAATAATTGCCGTAAAGATTGGCCAAAATTACTTGACACCCCCAAACTAGAAAAGTTTTCTATAAAAATTTCCACAAACACCTTGAATTGTTTAATATTAAGGGTCTATGACGTGTTGAATAATTTTACTATTATGGAGAACCTAGAAGAAGCTTCAATTTATTTTAATTTTGAAAAATGCAAAAGTGCCAATGAAATTATAGGACGTAGAGTGTTTAATGAATTGAATATAACAAAGAAGGGTAATATGTGTACAATAAAGGGAATAGCTTTTTGTTTTAAGAAAACAGAATGCTTTTATTTAGATCTCGTCTCTCTCGATAACAAATTAGATATAATAAAAGATAAAATGAAATCATGGTTTCAAAATACTAGTTTAAAATTGAAGATGTTGAATTTAAAAACAATTAATTTACATCTAAAGAAGTGGCTCGGCGTTGACTTAAATTCTATGTGTGTGGATGTTTCTCTGGTGGAGTGGCTAAAACATAGTGACGAGAGAATACCCGATGTATCTTATTTGATGAAAAAGTATTCCGGAATGGACTTAGCACAGTTAACTATAAAAGTGAACAATCGTCAAACGAAGCTAAAGAACTTGACGTTGGCTCAAGAGTCTTGTGTGAAGGCGTGGGCTATAGAAATGATATCCGAAAAACAACAGAATGCGTTGTATGAAAGCTATCAAAACGCTATAAACGTAGAAATCAAGGTTTTGAAGATTTTATCGAACTGTGAACTTCATGGAATAGTCGTGGACAAAGAGTTGGTCTCGAGGCTGTTGACCGACGTGCGCGACTCTCAGGATGTCTTGCAGAAGAAAGCCTTCAAGATTTGCGGATATCATTTCAATTTCAACTCATCAAAAGACGTTGCTAAGGTGTTAGGTATATATAACGGTCGTAAAACAAGCACAAGGAAAAGCGTTTTATCATCTCACAACACTCCAATATCTAGTATCGTGATGTACTGGAGAAAGTTGAATGCTATATTAACGAAAATTTTGTACCCGCTCACTGAAAAGGCGTGTATATACAGTGAAGGCGATCGGATAATGTCGTCGTATTCAACATTCACTTGTACGGGTAGGATCACGATGCACGAACCGAATCTACAGAACGTTCCTCGCACGTTTTCCATTCCACTACGTTACCTAACCTTTGACAACACCACAAGTGACGAAGTCATAGAATTCAACTGCAGGAACGTATTCAGAGCCGCTCCGGGCTCGGTCATGGTGTCTGCGGACTACTGTCAGCTGGAGATGAGGCTTTTGACGCATTTCAGCGAGGACAGTGCCCTGACGAGAATCATGAAGTCCGATGTTGACGTGTTTAAGTCTATAGCGGCTTCTTGGAGCGACGTACCCGAAGGAGAGGTAGACGACGATCTTCGCCAAAAGGCCAAACAACTTTGCTACGGCATTATATACGGAATGGGAAATAAGACCTTATCCCAACATTTAGACGTCTCGGAAATGGAGGCGTCATTATTTATGGATTCGTTCGAGAGAACCTATCCAGCCATCAGAGTGTTCACTAAATCTGTAATCGAGGAGTGTAAGAGGCAGGGCTTCGTCGAAACTTTGAGCGGCCGACGGAGATATCTGCCGGATATAACCAGTCATATTACATCTAGACGCAATACCGCAGAACGTCAGGCTGTGAATACAATGATACAAGGTTCCGCTGCGGACATTGCGAAATCTGCAATGTGCTCCATCGAAGACGGAATAAATAGTTTCAATCCTAAACCACGCCTTATATTACAAATGCACGACGAGCTCATCTATGAGGTCCACGAAACAAACAAATCACGTTTTATATCTCTCATGAAAAGTGTTATGGAAGATACAGTCGAGCTGAAAGTTCCTTTGCCCGTCAAATTGAAGTGCGGCTACACGTGGGGCGCCCTTGACGAAGTCGCGCTCTGA

Protein

MFDWQLACLCNTKVLFDCANLVYSAPTSAGKTLVAEILTIKTVLERQKKVIIILPFVSIVREKMFYLQNILSSSGIRVEGFMGSQSPAGGMQNVHVAICTIEKANSMINRLLDNGNIEDLGAVVVDELHLLGDQNRGYILELLLTKIKYVTSKSDLLIQVIGMSATLPNLETLATWLNAELFITTFRPIPLEEYCLVENKYYDKNGKYILEAKSSNYGVSCNDSVLKICLETIKEGCSVLIFCMTKNRCESLAQLLSSTFCKIGCEGSEFGMILRSQLNSEHILEALEQLKNSPVGLDQILQKTISFGVGYHHAGLTLDERDIIEGAFKSGAIRVLVATSTLSSGVNLPARKVIIRSPVFQKQPINILSYKQMSGRAGRMGRDTKGESILICSEAEKKIGFNLMMGDLDPVKSCIETKEKYMRAILEIIASNISCSKQELLLYTDCTLLSAQKEILSQNLILEDTLKELENYELIRIQNNHSENHYVATALGKACLSSSMAPNDGLTLFLTPYSVSSQWGNIDWLHLLNLWESLTKAMKKVGELVGVQESFIIKCLRGLNMKHLDSNKLNIHKRFYTALALQDLVNEVHLSEVANKFQCARGFLQGLQQASGTFAGMVTAFCKQLGWKSMEILISQFQDRLHFGIQSELLELMKLSSLNGMRARTLFDAGFETISSIAIADTDAIENVLLKSVPFESAKERENDEKGDIKKRTKIKNIWISGCCGMTMSEAAKNLINEARKCLEQEIGVNEIKWAVKNENSRNFEPKRILGSVPNDNKNTCDDKSQNNLNEQFEQIKENRNTFNSQSHQSILSVETHKSSLKTETDAIIVKKVVTQLFEDNDCADQCVNNKNDLSVFVSSANDTINQKSTLITSSGDIVWDSLNLTETALGNIARLQTPYKLPKSCLSDEDLAATTTNNIKNSVTSRNTSEKDISLFSSDGDNSSLFEDSLPLDLIPSKLLQDVETPNKREQLEDFYKIKSSNGLEELTESDEVEEMKLVYEEDQADKTNEVKNSIKDKPLQLFKSPIKRCCETDSIQTVIKKIKVDVKTNINNCRKDWPKLLDTPKLEKFSIKISTNTLNCLILRVYDVLNNFTIMENLEEASIYFNFEKCKSANEIIGRRVFNELNITKKGNMCTIKGIAFCFKKTECFYLDLVSLDNKLDIIKDKMKSWFQNTSLKLKMLNLKTINLHLKKWLGVDLNSMCVDVSLVEWLKHSDERIPDVSYLMKKYSGMDLAQLTIKVNNRQTKLKNLTLAQESCVKAWAIEMISEKQQNALYESYQNAINVEIKVLKILSNCELHGIVVDKELVSRLLTDVRDSQDVLQKKAFKICGYHFNFNSSKDVAKVLGIYNGRKTSTRKSVLSSHNTPISSIVMYWRKLNAILTKILYPLTEKACIYSEGDRIMSSYSTFTCTGRITMHEPNLQNVPRTFSIPLRYLTFDNTTSDEVIEFNCRNVFRAAPGSVMVSADYCQLEMRLLTHFSEDSALTRIMKSDVDVFKSIAASWSDVPEGEVDDDLRQKAKQLCYGIIYGMGNKTLSQHLDVSEMEASLFMDSFERTYPAIRVFTKSVIEECKRQGFVETLSGRRRYLPDITSHITSRRNTAERQAVNTMIQGSAADIAKSAMCSIEDGINSFNPKPRLILQMHDELIYEVHETNKSRFISLMKSVMEDTVELKVPLPVKLKCGYTWGALDEVAL

Uniprot

A0A194RSG6 A0A194QBH4

Pubmed

26354079

EMBL

KQ459984 KPJ19011.1 KQ459220 KPJ02893.1

Proteomes

UP000053240 UP000053268

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF00476   DNA_pol_A

Interpro

IPR014001   Helicase_ATP-bd        + More
IPR001098   DNA-dir_DNA_pol_A_palm_dom
IPR001650   Helicase_C
IPR011545   DEAD/DEAH_box_helicase_dom
IPR019760   DNA-dir_DNA_pol_A_CS
IPR002298   DNA_polymerase_A
IPR036397   RNaseH_sf
IPR027417   P-loop_NTPase
IPR012337   RNaseH-like_sf

SUPFAM

SSF52540 SSF52540 + More
SSF53098 SSF53098

Gene 3D

3.30.420.10

CDD

cd00079 HELICc

ProteinModelPortal

A0A194RSG6 A0A194QBH4

PDB

5A9J E-value=0, Score=1684

KEGG

101746157 K02349 DNA polymerase theta [EC:2.7.7.7] | (RefSeq) DNA polymerase theta-like

GO

GO:0006261 GO:0005524 GO:0003887 GO:0003677 GO:0006260 GO:0003676 GO:0001664 GO:0005525 GO:0016491 GO:0003824

PANTHER

PTHR10133

Length:

1695

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18876

Exp number, first 60 AAs:

0.10187

Total prob of N-in:

0.00849

outside

1 - 1695

Pi

213.550623

Theta

190.020115

Tajima's D

0.079412

CLR

0.756396

CSRT

0.392380380980951

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics