Gene

KWMTBOMO05255

Pre Gene Modal

BGIBMGA002419

Annotation

PREDICTED:_tubby-related_protein_4_[Bombyx_mori]

Location

Bomo_Chr9(-):12130277-12147494      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.546

CDS

ATGCATCTTCACTTCGAGAGAAACGTGAATGCGAAATGTGACTGCACCATATTGTCGCTGTCGTGGATGGGCAAAGTGCCCGACGAACTTCCCGAGGAAGAGGGATGGAAACTAAACCGTAATAATTACTATCAAGAGGGCTGGCTGGCTACAGGCAACGTGCGGGGCGTTGTTGGAGTCACGTTCACATCATCACACTCACGACGACCGCATGAACTTCCTCTACGGACCAATTACAATCTACGGGGACACAGATCAGACGTAATATTAGTTAAATGGAATGAACCGTACCAGAAGTTGGCGTCGTGCGACAGTTCCGGAGTGATATTTGTGTGGATCAAATATGAAGGCCGTTGGAGCATTGAGCTCATCAATGACAGAAGTACGCCGGTCACCCATTTCTCTTGGTCTCATGATGGAAGAATGGCGCTTATTTGTTACCAGGATGGGTTTGTGTTGGTCGGTTCTGTCGCCGGACAGAGATACTGGTCGTCAATGTTATCACTAGATGCGAGGATCACTAGCGGTTGTTGGACTCCTGACGATAACCAAGTGTATTTGGGCACCGCTTCTGCTCAGCTTGTCGTCATGGACGTTCATGGAGCAATGGTATCACAGGTACAACTGGTCGCGGAAGGTGGCATTACGTCAATGGCATGGTCGTGTGAAAAATTTAAAATGGAAGAAGGAGAAGACGGTTCCGAGAACAACGGGGGTCACGTGTTAGCTGTTGCGCTTGGTAGTGGAGAGATCGTGCTTCTACGAGGACACGATGACGTTAGTCCAGTGAGGGTGCAGACTGGGATCCGGGGGAACACGCTCGCGATGGAATGGGCTAATTCAAAAGAACTCTTGGCAGTTGCCGGCACTTTGGGAGCTGATATTGACGATTCTGCCGACTCACCACCTTATAAGAACATAGTGAAGTTCTACTCAGACACGGGAGTGCTTATTTACACTGTACCGATTCCTTTTACGCAGGCGCGTGTGACGGCCCTGACGTGGGGTCACGCGGCTAGACGGCTGTTTGTGGGCGTTGGCGGCGGCGTGTGCACGGCCCGCGTGTGGCGCGTCGTGGCGCCGCTGCAGCTGCTGGCGCGCGTGCGGGCCGCCCAGGCGCTGCGACACCCGCGACTCGCCGCCAGACTGCCGCTACCGCCGCGTCTTCAACCCGCATTGCACAACCTCTTCTCGCACACTATCAGATGCAACGTTCCGGAAATGAGTGACCTGCGTCGTTTCGTGTCCCGCCCCCCGGCGACGGGCGCGCGGTTGCACTGCACCATGCTGCGTCACGACGACGAGGAGCCCGGGGCCTACACGCTGTACCTCGAACACCTCGGCGGACTCGTGCCGCTGCTCAAGGGCCGCCGAACCAGCAAGATACGACCAGAGTTCGTTATATTCGATCCGCAGGCCGAAGGTATGTCCCCTCGGCCGGGTATCCGTAAATGA

Protein

MHLHFERNVNAKCDCTILSLSWMGKVPDELPEEEGWKLNRNNYYQEGWLATGNVRGVVGVTFTSSHSRRPHELPLRTNYNLRGHRSDVILVKWNEPYQKLASCDSSGVIFVWIKYEGRWSIELINDRSTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQRYWSSMLSLDARITSGCWTPDDNQVYLGTASAQLVVMDVHGAMVSQVQLVAEGGITSMAWSCEKFKMEEGEDGSENNGGHVLAVALGSGEIVLLRGHDDVSPVRVQTGIRGNTLAMEWANSKELLAVAGTLGADIDDSADSPPYKNIVKFYSDTGVLIYTVPIPFTQARVTALTWGHAARRLFVGVGGGVCTARVWRVVAPLQLLARVRAAQALRHPRLAARLPLPPRLQPALHNLFSHTIRCNVPEMSDLRRFVSRPPATGARLHCTMLRHDDEEPGAYTLYLEHLGGLVPLLKGRRTSKIRPEFVIFDPQAEGMSPRPGIRK

Similarity

Belongs to the TUB family.

Uniprot

H9IYT4   A0A194RNW0   A0A194QBQ3   A0A2H1WPG5   E0VI70   A0A1I8NNM0   + More
A0A1A9WPG2   A0A1I8NNM3   A0A1W4UPP2   A0A1W4UCL2   A0A1W4UPY8   A0A1W4URJ2   A0A0R1E6B9   B4PRC2   A0A0P9A1H7   B3LXI8   A0A0K8UI68   A0A0B4KI44   A0A0B4KHZ3   Q9VB18   A0A0R3NFB8   Q29BH2   A0A1B0BSX6   A0A0R3NFQ4   A0A0R3NKE3   A0A0L7R4M8   A0A3B0JIX2   A0A088AES9   A0A1B0CQE9   A0A0C9RSS1   A0A0C9RVG0   A0A0Q9W0M4   B4NAQ7   B4M629   A0A1B0GE57   A0A3F2YUT2   A0A1S4GCY0   A0A182HLN4   A0A0Q9XBI1   B4KB99   W8B3N1   W8BIT6   A0A0N0U3E0   A0A1W4WQ77   A0A195BP12   E2AB32   A0A158P082   A0A151ITG0   A0A026WW54   A0A3L8DGK5   A0A067QXP6   A0A1B6E6Z1   A0A232F143   U4U2C3   A0A224XJE8   A0A182HCA9   A0A0L0BZB4   A0A0P6J490   Q17G33   A0A182J9W9   A0A1A9Z234   A0A182U3A7   B0WKE1   A0A1A9V4Q3   A0A182Y3S8   A0A182VZL9   A0A182MUP1   B4GNY2   A0A182UNV5   B4IGU0   A0A0M4F3V0   A0A336MEL9   A0A336MJ24   B4JRY2   A0A336MHE1   A0A154PL61   F4WLC5   A0A182RZM5   Q4JSA9   Q7PKW0   A0A182WST1   A0A182QAA1   A0A182K5J6   A0A139WAN9   A0A182FAQ0   W5J655   A0A182NRT9   A0A084W6J8   T1GL37   A0A3S3Q6M8   J9K392   V4AGF5   A0A210QDL8   N6SVF1   T1KNE5   A0A1S3HGH9   A0A2R2MQI4   A0A0N7ZMU1   A0A0P6D264   A0A0P6G0Z5  

Pubmed

19121390    26354079    20566863    17994087    17550304    18057021    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    20966253    12364791    24495485    20798317    21347285    24508170    30249741    24845553    28648823    23537049    26483478    26108605    26999592    17510324    25244985    21719571    15944077    18362917    19820115    20920257    23761445    24438588    23254933    28812685   

EMBL

BABH01010857    BABH01010858    KQ459984    KPJ19010.1    KQ459220    KPJ02892.1    + More
ODYU01010028    SOQ54842.1    DS235184    EEB13076.1    CM000160    KRK04302.1    EDW98486.2    CH902617    KPU80520.1    EDV43882.2    KPU80519.1    GDHF01025935    JAI26379.1    AE014297    AGB96394.1    AGB96395.1    BT132902    AAF56725.4    ADV37393.1    AEV66552.1    CM000070    KRS99722.1    EAL27026.2    JXJN01019894    KRS99723.1    KRS99724.1    KQ414657    KOC65716.1    OUUW01000005    SPP80693.1    AJWK01023483    AJWK01023484    AJWK01023485    GBYB01011680    JAG81447.1    GBYB01011681    JAG81448.1    CH940652    KRF78682.1    CH964232    EDW80871.2    EDW59105.2    KRF78681.1    CCAG010012100    AAAB01008987    APCN01000909    CH933806    KRG02324.1    EDW16827.2    GAMC01013373    JAB93182.1    GAMC01013374    JAB93181.1    KQ435890    KOX69458.1    KQ976433    KYM87336.1    GL438234    EFN69308.1    ADTU01004555    ADTU01004556    ADTU01004557    KQ981046    KYN10047.1    KK107109    EZA59344.1    QOIP01000008    RLU19446.1    KK852898    KDR14163.1    GEDC01003595    JAS33703.1    NNAY01001303    OXU24421.1    KB631924    ERL87217.1    GFTR01008275    JAW08151.1    JXUM01033300    KQ560983    KXJ80130.1    JRES01001208    KNC24574.1    GDUN01001012    JAN94907.1    CH477266    EAT45552.1    DS231971    EDS29760.1    AXCM01000026    CH479186    EDW38865.1    CH480837    EDW49058.1    CP012526    ALC45957.1    UFQT01001086    SSX28832.1    SSX28833.1    CH916373    EDV94522.1    SSX28831.1    KQ434948    KZC12487.1    GL888207    EGI65088.1    CR954257    CAJ14153.1    EAA43116.3    AXCN02001148    KQ971381    KYB24960.1    ADMH02002143    ETN58294.1    ATLV01020823    ATLV01020824    ATLV01020825    ATLV01020826    KE525308    KFB45842.1    CAQQ02123279    CAQQ02123280    NCKU01000762    NCKU01000751    NCKU01000745    NCKU01000586    RWS14272.1    RWS14336.1    RWS14364.1    RWS14938.1    ABLF02040115    KB200109    ESP03124.1    NEDP02004067    OWF46847.1    APGK01055064    APGK01055065    APGK01055066    KB741259    ENN71704.1    CAEY01000276    GDIP01230009    JAI93392.1    GDIQ01084978    JAN09759.1    GDIQ01040097    JAN54640.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000009046    UP000095300    UP000091820    + More
UP000192221    UP000002282    UP000007801    UP000000803    UP000001819    UP000092460    UP000053825    UP000268350    UP000005203    UP000092461    UP000008792    UP000007798    UP000092444    UP000075882    UP000075840    UP000009192    UP000053105    UP000192223    UP000078540    UP000000311    UP000005205    UP000078492    UP000053097    UP000279307    UP000027135    UP000215335    UP000030742    UP000069940    UP000249989    UP000037069    UP000008820    UP000075880    UP000092445    UP000075902    UP000002320    UP000078200    UP000076408    UP000075920    UP000075883    UP000008744    UP000075903    UP000001292    UP000092553    UP000001070    UP000076502    UP000007755    UP000075900    UP000007062    UP000076407    UP000075886    UP000075881    UP000007266    UP000069272    UP000000673    UP000075884    UP000030765    UP000015102    UP000285301    UP000007819    UP000030746    UP000242188    UP000019118    UP000015104    UP000085678   

PRIDE

H9IYT4    Q9VB18   

Pfam

PF01167   Tub        + More
PF07525   SOCS_box
PF12894   ANAPC4_WD40

Interpro

IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom       
IPR025659   Tubby-like_C       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR000007   Tubby_C       
IPR001261   ArgE/DapE_CS       
IPR001496   SOCS_box       
IPR036036   SOCS_box-like_dom_sf       
IPR003034   SAP_dom       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF54518   SSF54518       
SSF158235   SSF158235       

Gene 3D

2.130.10.10     3.20.90.10    

ProteinModelPortal

H9IYT4   A0A194RNW0   A0A194QBQ3   A0A2H1WPG5   E0VI70   A0A1I8NNM0   + More
A0A1A9WPG2   A0A1I8NNM3   A0A1W4UPP2   A0A1W4UCL2   A0A1W4UPY8   A0A1W4URJ2   A0A0R1E6B9   B4PRC2   A0A0P9A1H7   B3LXI8   A0A0K8UI68   A0A0B4KI44   A0A0B4KHZ3   Q9VB18   A0A0R3NFB8   Q29BH2   A0A1B0BSX6   A0A0R3NFQ4   A0A0R3NKE3   A0A0L7R4M8   A0A3B0JIX2   A0A088AES9   A0A1B0CQE9   A0A0C9RSS1   A0A0C9RVG0   A0A0Q9W0M4   B4NAQ7   B4M629   A0A1B0GE57   A0A3F2YUT2   A0A1S4GCY0   A0A182HLN4   A0A0Q9XBI1   B4KB99   W8B3N1   W8BIT6   A0A0N0U3E0   A0A1W4WQ77   A0A195BP12   E2AB32   A0A158P082   A0A151ITG0   A0A026WW54   A0A3L8DGK5   A0A067QXP6   A0A1B6E6Z1   A0A232F143   U4U2C3   A0A224XJE8   A0A182HCA9   A0A0L0BZB4   A0A0P6J490   Q17G33   A0A182J9W9   A0A1A9Z234   A0A182U3A7   B0WKE1   A0A1A9V4Q3   A0A182Y3S8   A0A182VZL9   A0A182MUP1   B4GNY2   A0A182UNV5   B4IGU0   A0A0M4F3V0   A0A336MEL9   A0A336MJ24   B4JRY2   A0A336MHE1   A0A154PL61   F4WLC5   A0A182RZM5   Q4JSA9   Q7PKW0   A0A182WST1   A0A182QAA1   A0A182K5J6   A0A139WAN9   A0A182FAQ0   W5J655   A0A182NRT9   A0A084W6J8   T1GL37   A0A3S3Q6M8   J9K392   V4AGF5   A0A210QDL8   N6SVF1   T1KNE5   A0A1S3HGH9   A0A2R2MQI4   A0A0N7ZMU1   A0A0P6D264   A0A0P6G0Z5  

PDB

3JRO     E-value=0.00755287,     Score=93

KEGG

101746401    no KO assigned | (RefSeq) tubby-related protein 4

GO

GO:0008237   GO:0035556   GO:0099536   GO:0035493   GO:0005515   GO:0005086   GO:0032012   GO:0006281   GO:0006772   GO:0003677   GO:0001664   GO:0005525   GO:0016491   GO:0003824  

Length:

484

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15013

Exp number, first 60 AAs:

0.00739

Total prob of N-in:

0.00711

outside

1  -  484

 

 

Pi

208.662432

Theta

172.765765

Tajima's D

0.838671

CLR

0.165453

CSRT

0.616469176541173

Interpretation

Uncertain