SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05252
Pre Gene Modal
BGIBMGA002491
Annotation
PREDICTED:_uncharacterized_protein_LOC101745630_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.467
 

Sequence

CDS
ATGGCTGACGAAAGACTTGTGGTTCTAAATCGTAGTGACAATTTGGGATTCGGGTTTTCTTTGCTTGGTGAAGCCGGTTTGCCACATGTTATATACGAAATAGAAGAAAATTCACCGGCTGCTCGCAGCGGAGAAGTCGAGGCGGGAGACGTTTTGCTCAAGGTTAATGGGACTGATGTAAACCGGTTCACTACCAGAGAAGTTTTAAAATGCTTGCGACTGTCGTCGGATCCCGTGACGTTAAGACTGAGAAAGGACCCGCAGATCAAAGCGAGCGTGAGACGGTACTTGTCAGCGGCTACCGATCGGCGGTCTAGCGGCGGAGGCGCCGGTGTCCGCTCTAACCACGATAAATTAAGTTCGTCGTCGAGTAACTCGAACGGCAATTCCTCGAGTACATCGTCCAGTAACGGTTCCGCGGTGCAGTCCGGGGAGAGCTGCGAAGCTTTACTCACAGAAGAACGGGTGCGGAGACCAAAGTCGGCCCAGCCCAAGTTCGAAGCCTACATGATGACGGGCGACCTCATACTCAACCTGTCGAGGGTCGAGCACCCCCACCATAACCACCATGCTCCCACACATCGCACACATTACCACAGATATAACTCAACGCCAGCGTCGCCCAGTGAGAATAGACTGTGTGGCCGCGTGGAAATGCCGCAAAGACACAACTCCTCGCCTGATACCGGTCTCACTGCCAACGAACATGCGACTAAAATGTTCATATCGCAGCCGGCGTCGCCGGCGGGCGCGGGCGGGGGGGAGCACTCGGCGCGCCACCACCCCGCCGTCAGAACATCGAGATCTGAAGATCACCTGCAGAAGGAATGGTCGCTGAGCGCTGTGGGCGTGGAGCTAGAGGAGGACGTGACGTCATCGCTCAACACGCTGCTCGATGCCAGACCGGACTCGGCCACGCCCCAGCCGCGCTCCGACTCCGACGCGGAAAGAGACAGAATCGTATGGACTTACAACGCGCCTGTCTCGAGCGCGATGGAACGTTCACAACAGACTCCTTCTAACTCCACCTCCATCTCCGACACTATTTCACAGAGGTCGTCGTCCCCGGCGTCTCCGTCGTCGTCGTCGGCGCTGTCCCCGCACCGCGCCGCCGCGCACGCCTTACTGCCGCATCACAAACTTAACGGCGACATGAGTCTCTCCGAAGCCGTCTCAAACATATCGAGTCCGGACTACCAAGACCAGGACGACATGTTCGAGACGGGCCGGGAGTGTCCGCGCATGGAGCTCTCCGACCCCTCGGACTCGGACTCCACGATCCTCGTCTCCGAGCCGTGCCACAAGCGAGCCAAGTCCAACTCGAGCTATTCGAACGAGCACGGCAGTGACGTCACGCTCAACGGAGACAACAACGACCACAGAATAGTCATACAAGTAAAGGGACCGGACAAACAGAACCAGAATTCGAACGAGAATGTAAATATGAATAACAATAACAGTAATTATAGTCAGAACGGTAATGAGAACGGTTACACGTCGCCAGAGAATCAGGGTTACCAGGAGGTCTGCGGCTCGTCGGAGACAGGGTCGGACGAGGGCTCGGACGGCGACTCGTTGCATTCCTTCCACTACAGTCCTAAGGCTGTGGACATCCCCTCTGCCGAGAGACTTGCCAAGAGACTCTATCATCTTGACGGATTCAAGAAGTCTGACGTATCAAGGCACCTCAGTAAAAATAACGAGTTCTCCCGCGCCGTAGCGGAAGAGTACGTGAAGCACTTCGAGTTCGCGAACACCACGCTGGACGCGGCGCTGCGGACCTTCCTCGCGCGGTTCGCGCTCTCCGGCGAGACCCAGGAGCGGGAGCGGGTCCTCGTGCACTTCTCCAGGAGGTACCTGGAGTGCAACCCTGGAACTTTTAACTCCCAGGACGCGGTGCACACGCTGACGTGCGCCATAATGCTGCTGAACACGGACCTGCACGGCTGCGGCGGCGCGCTGCAGCGGATGTCGTGCGCAGAGTTCATCGACAACCTGGCCGACCTCAACGACGGCGACAACTTCCCGCGCGACACGCTCAAGCACCTGTACCACGCCATCCGCTCGCAGCCGCTGCAGTGGGCGCTTTCAAATATGCTGATGATTTGTAGCGACACCGAGAGCGCAGTTTTGACAGCGGGGGCGGGGGGCGAGGTGCGCGCCGCGGGGGGCGGGGCCAACCCCTTCCTCGACGTCGCCGACCCCTCGCGCGCCGTCGAGTACAAGAAGGGATACGTCATGAGGAAATGCTGCGTCGATCCCAACGGGAAAAGAACACCTTTCGGACGGAGAGGCTGGAAAATGTTTTATTGTACGTTAAGAGATTTAGTCTTGTATCTACATAAAGACGAACACGGCTTCAGGCGCAGTCAAATGTCAGATAATTTACACAACGCTATCCGGATACATCACGCGCTGGCTACCAAAGCGATAGACTACACTAAAAAACAACATGTCTTTAGATTGCAGACGGCCGATCAAGCAGAGTTTTTATTTCAAACAAGGTAA
Protein
MADERLVVLNRSDNLGFGFSLLGEAGLPHVIYEIEENSPAARSGEVEAGDVLLKVNGTDVNRFTTREVLKCLRLSSDPVTLRLRKDPQIKASVRRYLSAATDRRSSGGGAGVRSNHDKLSSSSSNSNGNSSSTSSSNGSAVQSGESCEALLTEERVRRPKSAQPKFEAYMMTGDLILNLSRVEHPHHNHHAPTHRTHYHRYNSTPASPSENRLCGRVEMPQRHNSSPDTGLTANEHATKMFISQPASPAGAGGGEHSARHHPAVRTSRSEDHLQKEWSLSAVGVELEEDVTSSLNTLLDARPDSATPQPRSDSDAERDRIVWTYNAPVSSAMERSQQTPSNSTSISDTISQRSSSPASPSSSSALSPHRAAAHALLPHHKLNGDMSLSEAVSNISSPDYQDQDDMFETGRECPRMELSDPSDSDSTILVSEPCHKRAKSNSSYSNEHGSDVTLNGDNNDHRIVIQVKGPDKQNQNSNENVNMNNNNSNYSQNGNENGYTSPENQGYQEVCGSSETGSDEGSDGDSLHSFHYSPKAVDIPSAERLAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEEYVKHFEFANTTLDAALRTFLARFALSGETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIRSQPLQWALSNMLMICSDTESAVLTAGAGGEVRAAGGGANPFLDVADPSRAVEYKKGYVMRKCCVDPNGKRTPFGRRGWKMFYCTLRDLVLYLHKDEHGFRRSQMSDNLHNAIRIHHALATKAIDYTKKQHVFRLQTADQAEFLFQTR

Summary

Pfam
PF15410   PH_9        + More
PF00595   PDZ
PF01369   Sec7
PF17820   PDZ_6
Interpro
IPR001605   PH_dom-spectrin-type        + More
IPR000904   Sec7_dom       
IPR035999   Sec7_dom_sf       
IPR023394   Sec7_C_sf       
IPR001849   PH_domain       
IPR036034   PDZ_sf       
IPR041681   PH_9       
IPR001478   PDZ       
IPR011993   PH-like_dom_sf       
IPR041489   PDZ_6       
SUPFAM
SSF48425   SSF48425        + More
SSF50156   SSF50156       
Gene 3D
PDB
1S9D     E-value=1.41146e-16,     Score=214

Ontologies

Topology

Length:
835
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0249099999999999
Exp number, first 60 AAs:
0.02362
Total prob of N-in:
0.00119
outside
1  -  835
 
 

Population Genetic Test Statistics

Pi
221.870119
Theta
158.498921
Tajima's D
1.429567
CLR
0.401398
CSRT
0.773211339433028
Interpretation
Uncertain
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