Gene

KWMTBOMO05246

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(-):11996224-11999084      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.144 Nuclear   Reliability : 1.361

CDS

ATGCGAGGAAATGGCCACTTCACAAATGGAGTGGCCATTGTAGTTCCACCCTCCTTAAATAAGTTCGTTCTTGGATATAATCCAGTCTCCGAACGGATTCTCACTATGAAGTTAAACACAAAGCCTTGTATACTCAATATTGTTCAGGTTTATGCCCCAACAAGTACCGCTACCGGATCTGAGATAGAAATTGATCTCCTATACAACAAACTCGACGACGTGTTAGATGCAATTCCAAGTCGGGAGATGATCATGATTCTTGGAGACTGGAATGCTAAAGTGGGCACCACGAAGTTTGACGAACATTTAAGAGAAGTGGTTGGTAGATATGGACTAGGCGTAAGGAACGATCGCGGCGAAAGGTTTATTGACTTCTGCACAAGCAAAAAGCTAACGATAATGAATACTTGCTTTCAACACCATGCTAGACGTCTATACACGTGGGTGTCTCCAGGAGATAGATACAGGAATCAAATTGACTATATCTTAATCAATTCTCGCTGGAGGTCTTCAATAAGCAACGTGAAGACGTTTCCCGGAGCTGACTGTGGTTCTGACCATAATTTGCTTGTAGCTAATTTTGCTTTGCGTTTAAAATCACCAAGAGCACGTACCAAAAGAGTCCCGCAGCTGAGTCCTTCGGAGAGTATTGCATTCCGGCTGTCTCTTGAAGAGAAGTTATCCGACATAATTACTGTCCAATACCCTTCGGCAGACGCCCTTTGGACTAACCTCAAGGAGCTAGTTAATACAACCTTGGATGAAATCCGCAAACCTCAACAACTCGTGCCAAAAAAGTCTGCATGGATTTCAGACCGCACTTGGGCTCTCGCAGAACAGAGAAGGAATCTTAGGGTCAAGGATATGCAGGACCCAGAGGTGAGAGGTGAATACAGTGATCTCTGTAAGTACATTGATGTGTGTTGCAAAGAAGATAAAAACAATTACATTAATGGAATATGTCGTGAGATAGAAAACCACTCCCACAAATACCAAACTGCAGATCTCTTCAAGAAAATCCGCCAGCTTACAAAGAAGTTTAAGCCTAAGTCCTGGGTGATTGAGAATGATGACGGGCGCCTTTTGAATCGGTTAGACGAAATTTCCGAGAGGTGGCGTTCCTATTGTCAGGATCTATACAAAAACCCATCATCTATTACTTCAAGTAATGTACCCGCCATCGATTGTGTGGATAGAGAGCCGAATATTCTTCGAGCTGAGATTGTGGCTGCTTTGCGCTCACTGAAAAATGGGAAAGCACCTGGCCCTGACTTGATATCAGCGGAAATTCTGAAGGTGCTAGGTGATAACGGAATTACTGCTCTGCACTCCATCTGCAACAAAGTGTGGGCGGATGGTGTGTGGCCTAGTGACTGGACTAGGTCGATTATTCTTCCCTTGCACAAAAAAGGCTCAACGAAGCAATGTGATAACTACCGCACGCTTGCACTCATCTCCCACGCCAGCAAGATCTTACTTTACATACTGAACAACCGGATTCGTTACTACCTGGACCAACAGATTCCGCAAGAACAAGCCGGTTTTGTGAAGGGTAGAGGCACGCGTGAGCAAATTCTTAACGTGAGGCAGCTAATCGAGAAGGGTCGCGAATACAATGTTCCATTCATCATGTGTTTCATCGACTACAGCAAGGCTTTTGATTGTGTCAACTGGAGTTCCTTGTGGAAGGTATTGAATGTTCTTGGTGTACCCAATCATCTGATAGTGCTGGTACAGAGCCTGTATATCTACAGTCAGGGAGTTGTCAGAATCGATGAAGCTGTGTCCCAACCGTTCTGTTTTGGAAAAGGTGTCCGGCAGGGTTGCATACTGTCACCTATACTTTTTAATGCATATGGAGAGTACATCATGCGGCAGACTTGTGAAGATTGGTCGGGAGGTGTGCGCATTGGTGGAGCTCATATTACAAATCTCCGATATGCCGATGACACGACCCTGCTAGCTGCAGACGAACCTGAAATGTCTCTTTTCTTCAGCAAAATGGAGCGTATCAGCAACAGCCTAGGCCTCTCCATAAATAGATCAAAAACGAAATTAATGGTGGTGGATCGTGCAAATGTTCTAAGATTGAATGGGGCGCTTGGATTAGAGGTTGTAGACGAATTCGTGTATCTCGGATCCTGCATCAGCAGCAAAGGCTCATGTGAAACTGACGTGCGCCGACGTATCGGAATGGCTAAAAGTGCGATGTCTCAGCTACAGAAGATCTGGAAGAATAGAGGGATAGGCCTGAAAACTAAAACCAGACTGGTGCGGACTCTTGTTTTCTCTATCTTCTTGTATGGAGCTGAGACATGGACGTTGAAAGCAGCAGACCGAATGCGCATCGATGCTTTCGAAATGTGGTGTTGGAGACGCATGCTAAGAATTCCGTGGACAGCCTTCCGGACTAACGTGTCGATATTGAAGCAACTGGGCATCAAAATCAGACTGTCTACTGTATGTCTGAAGCGGATCCTCGAATATTTTGGTCACATTGCGAGGAAAGACGGCGATAACCTGGAAAAACTTATGATCACAGGGAAAGTTGAAGGCAACAGATCTAGAGGCCGCAGCCATACTCGTTGGTCCGATCAGATCCGCACCGCTTTGGACAGTACAGTGTACAGCGCGCTGCATGACGCCGTGGACAGGGGAAAGTGGAAAAAGATCCTAAAATTGAAGCTCATGGGTGATGGTGGTCACGACCCTCAGACATGA

Protein

MRGNGHFTNGVAIVVPPSLNKFVLGYNPVSERILTMKLNTKPCILNIVQVYAPTSTATGSEIEIDLLYNKLDDVLDAIPSREMIMILGDWNAKVGTTKFDEHLREVVGRYGLGVRNDRGERFIDFCTSKKLTIMNTCFQHHARRLYTWVSPGDRYRNQIDYILINSRWRSSISNVKTFPGADCGSDHNLLVANFALRLKSPRARTKRVPQLSPSESIAFRLSLEEKLSDIITVQYPSADALWTNLKELVNTTLDEIRKPQQLVPKKSAWISDRTWALAEQRRNLRVKDMQDPEVRGEYSDLCKYIDVCCKEDKNNYINGICREIENHSHKYQTADLFKKIRQLTKKFKPKSWVIENDDGRLLNRLDEISERWRSYCQDLYKNPSSITSSNVPAIDCVDREPNILRAEIVAALRSLKNGKAPGPDLISAEILKVLGDNGITALHSICNKVWADGVWPSDWTRSIILPLHKKGSTKQCDNYRTLALISHASKILLYILNNRIRYYLDQQIPQEQAGFVKGRGTREQILNVRQLIEKGREYNVPFIMCFIDYSKAFDCVNWSSLWKVLNVLGVPNHLIVLVQSLYIYSQGVVRIDEAVSQPFCFGKGVRQGCILSPILFNAYGEYIMRQTCEDWSGGVRIGGAHITNLRYADDTTLLAADEPEMSLFFSKMERISNSLGLSINRSKTKLMVVDRANVLRLNGALGLEVVDEFVYLGSCISSKGSCETDVRRRIGMAKSAMSQLQKIWKNRGIGLKTKTRLVRTLVFSIFLYGAETWTLKAADRMRIDAFEMWCWRRMLRIPWTAFRTNVSILKQLGIKIRLSTVCLKRILEYFGHIARKDGDNLEKLMITGKVEGNRSRGRSHTRWSDQIRTALDSTVYSALHDAVDRGKWKKILKLKLMGDGGHDPQT

Uniprot

D7F163   D7F168   D7F172   D7F161   D5LB39   D7F162   + More
D7F175   A0A2W1BNH4   D7F167   D7F174   A0A3S3P648   H2YWZ5   A0A3Q1NFT8   A0A3Q1MD43   A0A2A4JBK9   A0A2V9X8L4   D5LB38   A0A2S2PMS6   A0A076N3Z4   A0A3Q1MS18   A0A2A4JXP9   W5MYT3   H3J6U9   A0A2J7Q6A8   A0A2J7QEJ0   A0A2J7QI56   A0A2J7Q5D5   A0A2J7RP47   A0A2J7PW81   A0A2J7PTY0   A0A2J7QR01   A0A2J7REE7   A0A2J7PQA3   A0A2J7RLI7   A0A2J7QGX8   A0A2J7Q6P7   A0A2J7RGX2   A0A2J7QGT4   A0A2J7Q2Z3   A0A2J7PMJ3   A0A2J7R4R4   A0A2J7QH51   A0A2B7ZXS2   A0A2J7Q3T8   A0A2J7QUN7   A0A2J7PHM9   A0A2J7QGJ2   A0A2J7Q0C6   W5NGM3   A0A2J7QKB0   A0A3Q1LLN0   A0A2J7QCG2   A0A2J7PT27   A0A2J7QJJ9   A0A076N1B6   A0A2J7R8G1   A0A2J7R8P5   A0A2J7RIL8   A0A2J7R901   A0A2J7QUD0   A0A2J7QMC5   A0A2J7PX03   A0A1W7RAL1   A0A2J7Q7C6   A0A146LUY8  

Pubmed

20470440    28756777    19393038    26823975   

EMBL

FJ265548    ADI61816.1    FJ265553    ADI61821.1    FJ265557    ADI61825.1    + More
FJ265546    ADI61814.1    GU815090    ADF18553.1    FJ265547    ADI61815.1    FJ265560    ADI61828.1    KZ150025    PZC74827.1    FJ265552    ADI61820.1    FJ265559    ADI61827.1    NCKU01004395    RWS06003.1    NWSH01001998    PCG69477.1    QIAP01000240    PYX61602.1    GU815089    ADF18552.1    GGMR01018096    MBY30715.1    KF881086    AIJ27485.1    NWSH01000469    PCG76200.1    AHAT01017643    AAGJ04118689    AAGJ04161747    NEVH01017534    PNF24114.1    NEVH01015309    PNF27009.1    NEVH01013959    PNF28275.1    NEVH01017570    PNF23798.1    NEVH01002141    PNF42599.1    NEVH01020937    PNF20581.1    NEVH01021219    PNF19787.1    NEVH01012082    PNF31006.1    NEVH01005277    PNF39212.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01002684    PNF41704.1    NEVH01014359    PNF27813.1    NEVH01017460    PNF24248.1    NEVH01003750    PNF40091.1    PNF27789.1    NEVH01019075    PNF22955.1    NEVH01023985    PNF17546.1    NEVH01007402    PNF35815.1    NEVH01014358    PNF27914.1    PDHN01000949    PGH37547.1    NEVH01019064    PNF23230.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01025135    PNF15828.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01019971    PNF22037.1    AHAT01008485    NEVH01013275    PNF29009.1    NEVH01016289    PNF26277.1    NEVH01021921    PNF19488.1    NEVH01013553    PNF28765.1    KF881087    AIJ27486.1    NEVH01016335    NEVH01006721    PNF25462.1    PNF37115.1    PNF37211.1    NEVH01003500    PNF40666.1    PNF37310.1    NEVH01011186    PNF32183.1    NEVH01013215    PNF29703.1    NEVH01020865    PNF20863.1    GFAH01000222    JAV48167.1    NEVH01017443    PNF24485.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1   

Proteomes

UP000285301    UP000007875    UP000009136    UP000218220    UP000247801    UP000018468    + More
UP000007110    UP000235965   

PRIDE

D7F163    D7F168    D7F172    D7F161    D5LB39    D7F162    + More
D7F175    D7F167    D7F174    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   D7F168   D7F172   D7F161   D5LB39   D7F162   + More
D7F175   A0A2W1BNH4   D7F167   D7F174   A0A3S3P648   H2YWZ5   A0A3Q1NFT8   A0A3Q1MD43   A0A2A4JBK9   A0A2V9X8L4   D5LB38   A0A2S2PMS6   A0A076N3Z4   A0A3Q1MS18   A0A2A4JXP9   W5MYT3   H3J6U9   A0A2J7Q6A8   A0A2J7QEJ0   A0A2J7QI56   A0A2J7Q5D5   A0A2J7RP47   A0A2J7PW81   A0A2J7PTY0   A0A2J7QR01   A0A2J7REE7   A0A2J7PQA3   A0A2J7RLI7   A0A2J7QGX8   A0A2J7Q6P7   A0A2J7RGX2   A0A2J7QGT4   A0A2J7Q2Z3   A0A2J7PMJ3   A0A2J7R4R4   A0A2J7QH51   A0A2B7ZXS2   A0A2J7Q3T8   A0A2J7QUN7   A0A2J7PHM9   A0A2J7QGJ2   A0A2J7Q0C6   W5NGM3   A0A2J7QKB0   A0A3Q1LLN0   A0A2J7QCG2   A0A2J7PT27   A0A2J7QJJ9   A0A076N1B6   A0A2J7R8G1   A0A2J7R8P5   A0A2J7RIL8   A0A2J7R901   A0A2J7QUD0   A0A2J7QMC5   A0A2J7PX03   A0A1W7RAL1   A0A2J7Q7C6   A0A146LUY8  

KEGG

105841419    no KO assigned | (RefSeq) uncharacterized LOC105841419

GO

GO:0003964   GO:0004519   GO:0004197   GO:0006355  

Length:

906

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.05086

Exp number, first 60 AAs:

0.77615

Total prob of N-in:

0.03522

outside

1  -  906

 

 

Pi

290.918883

Theta

19.519467

Tajima's D

2.031186

CLR

0

CSRT

0.887905604719764

Interpretation

Uncertain