Silkworm Genome Informatics Database

Gene

KWMTBOMO05235

Annotation

hypothetical_protein_RR46_02804_[Papilio_xuthus]

Location

Bomo_Chr9(+):11699321-11703715 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.172 Mitochondrial Reliability : 1.046 Nuclear Reliability : 1.374

CDS

ATGGCGGCGACTATGGCGTCTTCGGCTCACGACCCCTATGCGAGGGAGGGTGAACTGCGCGTTCAACACTCCAGAGATGGTTCCAGGGATTCCGGGATCTTTCACACGACCAAAGGTCTCTGGAATGCTCCAGGGCAGAACAACTGTTTCCTCAATAGTGCAGTGCAGAGTATGGATGTTGAGCCTTTGTGCTTTGACGTCTTTGTATGA

Protein

MAATMASSAHDPYAREGELRVQHSRDGSRDSGIFHTTKGLWNAPGQNNCFLNSAVQSMDVEPLCFDVFV

Uniprot

A0A194QBP0 A0A194RNL0 A0A212FJZ1 A0A087ZY27 B4I149 Q6IIR9 + More
W4ZIP9 A0A0Q5T2W1

Pubmed

26354079 22118469 17994087 14709175

EMBL

KQ459220 KPJ02877.1 KQ459984 KPJ18999.1 AGBW02008187 OWR54051.1 + More
CH480819 EDW53230.1 BK002997 DAA03197.1 AAGJ04009283 AAGJ04009284 AAGJ04009285 AAGJ04009286 AAGJ04009287 AAGJ04009288 AAGJ04009289 AAGJ04009290 CH954180 KQS29693.1

Proteomes

UP000053268 UP000053240 UP000007151 UP000005203 UP000001292 UP000007110 + More
UP000008711

PRIDE

Q6IIR9

Pfam

PF00443 UCH

Interpro

IPR001394   Peptidase_C19_UCH        + More
IPR038765   Papain-like_cys_pep_sf
IPR028889   USP_dom

SUPFAM

SSF54001 SSF54001

ProteinModelPortal

A0A194QBP0 A0A194RNL0 A0A212FJZ1 A0A087ZY27 B4I149 Q6IIR9 + More
W4ZIP9 A0A0Q5T2W1

KEGG

101744043 no KO assigned | (RefSeq) uncharacterized LOC101744043

GO

GO:0016021 GO:0036459 GO:0016579

Length:

69

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.40547

outside

1 - 69

Pi

142.087139

Theta

175.486535

Tajima's D

-0.660367

CLR

0.503502

CSRT

0.208039598020099

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics