Gene

KWMTBOMO05234

Pre Gene Modal

BGIBMGA002482

Annotation

PREDICTED:_DNA_excision_repair_protein_ERCC-1-like_[Plutella_xylostella]

Location

Bomo_Chr9(+):11680281-11682912      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.746

CDS

ATGGAAATAGAGGATGGTTTTGATGAATTGTTGGCCGAAATTAGTGAACCATCATCATCAAAGAAAATTAAAGTAGATGAAATTTCTGCTCAAGCAGGAACATCTGACGAAGCTACCATAAAACCAAGATCATCAAAGACACACTGTGTTCTAGTAAATAAAAACCAGAGAGGCAATCCTCTTCTCAAACACATAACCAGCGTGCCTTGGGAATATGATGATATAGTGCCTGATTATGAGGTTGGAAAAACAATATGCTTACTATTCCTCTCATTAAGATATCACAACTTGAATCCAGATTACATACACAACAGATTGAAGGAGCTAGGCAAGAAGTATGATTTGAGAGTTTTGCTAGTACAGGTTGATTTGAAAGATCCACATGCATCTTTAAAAAATTTAACACGAATATGCCTGCTGACTGATATAACTTTAATGTTAGCTTGGAACCCAGAGGAAGCAGCTAAAGTTGTTGAAAACTATAAAATTTACGAAAACAAACCGCCAGACAGAATTATGGAAAAAATTGAGAATGATCCTCATCAGAAGATTATCAATGCATTGTCGTCAATCAAACCTGTCAACAAAACTGATGCCATGACACTAATCAAAACATTTGGCACCCTAGAGAATATTATTAAAGTTTCAGAGTCTAGATTAGCAGAATGCCCTGGGTTTGGTATAACAAAAGCAAAAAAACTTTACAAGGCATTGCATGAACCATTTTTAAAGAAGGGTCAAACAAAAGATAAAAAAGATGAATTTCCTGATGAAGATTTGACACTTGAAGAATTAGAGAAAATTGTAAATGAAAACCAAGATATATCCTGA

Protein

MEIEDGFDELLAEISEPSSSKKIKVDEISAQAGTSDEATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGKTICLLFLSLRYHNLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAWNPEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLYKALHEPFLKKGQTKDKKDEFPDEDLTLEELEKIVNENQDIS

Uniprot

H9IYZ7   A0A2H1W5I2   A0A212FPC9   S4PXW7   A0A194QHF8   A0A0L7LFA1   + More
A0A023ELD2   Q16ZS1   Q16IF3   A0A182GD33   A0A1B6J004   A0A1B6EQ02   A0A1Q3F5R7   A0A232FCR2   A0A1B0DB84   K7J2B8   A0A336M8L9   A0A2Z5TRG1   B0X6V4   A0A182K5H1   A0A182I869   A0A182KML6   A0A182XKI1   A0A2R7WFB7   A0A182NDX9   A0A182J1J9   A0A182UYE4   A0A182UCX8   Q7Q256   A0A1B6BZS6   A0A084VTL1   A0A182MJC1   A0A2J7RN28   A0A182P430   A0A0L7QLF1   A0A1B0FBW3   B3MC73   A0A182YG11   A0A1J1IWY4   A0A1B6M6T3   A0A1B0A0B4   A0A182QC63   A0A1Y1KIN0   A0A182RFJ8   J3JUT2   B4LJT8   A0A182VWZ6   Q292E9   A0A171AGE1   B4GDM6   A0A182T3H3   A0A087ZQZ8   A0A2M4BZ61   A0A2A3E192   A0A0P4VU68   Q7KMG7   A0A2H8TK95   A0A1B0BJL5   A0A0C9R016   A0A224XW85   A0A1A9YQ96   A0A182FA36   A0A154PT00   R4G7V1   B4JW82   A0A0L0C8T0   B4MY76   A0A3B0JTI0   J9JUK8   A0A310STA4   A0A0J9RCR8   A0A2M4BY99   B4QFZ7   Q95S37   A0A069DRD6   A0A0N0BF57   U5ER47   B4HRQ5   B4KT66   A0A2S2N6H8   B4P7Q2   A0A2S2R4W7   A0A1W4U640   A0A1I8MQQ3   A0A0M4EH38   W5JH12   A0A1A9ULN9   A0A0T6B1Z5   B3NQR6   A0A1I8NU01   A0A195CJZ1   A0A1S3JP97   A0A151XAL8   A0A0A9Y731   A0A195B763   A0A146MCN6   A0A195FG53   A0A146KPP7  

Pubmed

19121390    22118469    23622113    26354079    26227816    24945155    + More
17510324    26483478    28648823    20075255    26760975    20966253    12364791    14747013    17210077    24438588    17994087    25244985    28004739    22516182    23537049    15632085    27129103    10812334    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    22936249    26334808    17550304    25315136    20920257    23761445    25401762    26823975   

EMBL

BABH01010810    ODYU01006433    SOQ48273.1    AGBW02003014    OWR55585.1    GAIX01004318    + More
JAA88242.1    KQ459220    KPJ02876.1    JTDY01001358    KOB74085.1    GAPW01003560    JAC10038.1    CH477485    EAT40150.1    CH478081    EAT34045.1    JXUM01160686    KQ573783    KXJ67905.1    GECU01015217    JAS92489.1    GECZ01029754    JAS40015.1    GFDL01012130    JAV22915.1    NNAY01000456    OXU28270.1    AJVK01004674    AAZX01001561    UFQS01000673    UFQT01000673    SSX06033.1    SSX26390.1    FX985813    BBA93700.1    DS232425    EDS41625.1    APCN01002659    KK854737    PTY18306.1    AAAB01008978    EAA13582.4    GEDC01030823    JAS06475.1    ATLV01016361    KE525079    KFB41305.1    AXCM01002744    NEVH01002545    PNF42236.1    KQ414915    KOC59443.1    CCAG010009805    CH902619    EDV36173.1    CVRI01000063    CRL04717.1    GEBQ01008342    JAT31635.1    AXCN02002211    GEZM01086418    GEZM01086417    JAV59465.1    APGK01056773    BT126997    KB741277    KB632196    AEE61959.1    ENN71111.1    ERL89972.1    CH940648    EDW60597.1    CM000071    EAL24913.1    GEMB01001097    JAS02050.1    CH479181    EDW31683.1    GGFJ01008897    MBW58038.1    KZ288474    PBC25294.1    GDKW01002226    JAI54369.1    AF146797    AE013599    AAD38010.1    AAF58196.1    GFXV01001903    MBW13708.1    JXJN01015446    GBYB01001295    JAG71062.1    GFTR01004157    JAW12269.1    KQ435180    KZC14993.1    ACPB03005165    GAHY01002082    JAA75428.1    CH916375    EDV98220.1    JRES01000755    KNC28642.1    CH963894    EDW77065.1    OUUW01000001    SPP74378.1    ABLF02026344    ABLF02026345    KQ760176    OAD61645.1    CM002911    KMY93853.1    GGFJ01008898    MBW58039.1    CM000362    EDX07142.1    AY060971    AAL28519.1    GBGD01002628    JAC86261.1    KQ435812    KOX72862.1    GANO01003933    JAB55938.1    CH480816    EDW47919.1    CH933808    EDW09586.1    GGMR01000146    MBY12765.1    CM000158    EDW91078.1    KRJ99599.1    GGMS01015760    MBY84963.1    CP012524    ALC41822.1    ADMH02001261    ETN63351.1    LJIG01016172    KRT81400.1    CH954179    EDV55976.1    KQ977721    KYN00389.1    KQ982339    KYQ57397.1    GBHO01015637    GBHO01015635    GBRD01008148    JAG27967.1    JAG27969.1    JAG57673.1    KQ976574    KYM80358.1    GDHC01002319    JAQ16310.1    KQ981625    KYN39004.1    GDHC01021639    JAP96989.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000037510    UP000008820    UP000069940    + More
UP000249989    UP000215335    UP000092462    UP000002358    UP000002320    UP000075881    UP000075840    UP000075882    UP000076407    UP000075884    UP000075880    UP000075903    UP000075902    UP000007062    UP000030765    UP000075883    UP000235965    UP000075885    UP000053825    UP000092444    UP000007801    UP000076408    UP000183832    UP000092445    UP000075886    UP000075900    UP000019118    UP000030742    UP000008792    UP000075920    UP000001819    UP000008744    UP000075901    UP000005203    UP000242457    UP000000803    UP000092460    UP000092443    UP000069272    UP000076502    UP000015103    UP000001070    UP000037069    UP000007798    UP000268350    UP000007819    UP000000304    UP000053105    UP000001292    UP000009192    UP000002282    UP000192221    UP000095301    UP000092553    UP000000673    UP000078200    UP000008711    UP000095300    UP000078542    UP000085678    UP000075809    UP000078540    UP000078541   

PRIDE

H9IYZ7    Q7KMG7    Q95S37   

Pfam

PF03834   Rad10        + More
PF12826   HHH_2

Interpro

IPR011335   Restrct_endonuc-II-like        + More
IPR004579   ERCC1/RAD10/SWI10       
IPR010994   RuvA_2-like       
IPR041663   DisA/LigA_HHH       

SUPFAM

SSF47781   SSF47781        + More
SSF52980   SSF52980       

ProteinModelPortal

H9IYZ7   A0A2H1W5I2   A0A212FPC9   S4PXW7   A0A194QHF8   A0A0L7LFA1   + More
A0A023ELD2   Q16ZS1   Q16IF3   A0A182GD33   A0A1B6J004   A0A1B6EQ02   A0A1Q3F5R7   A0A232FCR2   A0A1B0DB84   K7J2B8   A0A336M8L9   A0A2Z5TRG1   B0X6V4   A0A182K5H1   A0A182I869   A0A182KML6   A0A182XKI1   A0A2R7WFB7   A0A182NDX9   A0A182J1J9   A0A182UYE4   A0A182UCX8   Q7Q256   A0A1B6BZS6   A0A084VTL1   A0A182MJC1   A0A2J7RN28   A0A182P430   A0A0L7QLF1   A0A1B0FBW3   B3MC73   A0A182YG11   A0A1J1IWY4   A0A1B6M6T3   A0A1B0A0B4   A0A182QC63   A0A1Y1KIN0   A0A182RFJ8   J3JUT2   B4LJT8   A0A182VWZ6   Q292E9   A0A171AGE1   B4GDM6   A0A182T3H3   A0A087ZQZ8   A0A2M4BZ61   A0A2A3E192   A0A0P4VU68   Q7KMG7   A0A2H8TK95   A0A1B0BJL5   A0A0C9R016   A0A224XW85   A0A1A9YQ96   A0A182FA36   A0A154PT00   R4G7V1   B4JW82   A0A0L0C8T0   B4MY76   A0A3B0JTI0   J9JUK8   A0A310STA4   A0A0J9RCR8   A0A2M4BY99   B4QFZ7   Q95S37   A0A069DRD6   A0A0N0BF57   U5ER47   B4HRQ5   B4KT66   A0A2S2N6H8   B4P7Q2   A0A2S2R4W7   A0A1W4U640   A0A1I8MQQ3   A0A0M4EH38   W5JH12   A0A1A9ULN9   A0A0T6B1Z5   B3NQR6   A0A1I8NU01   A0A195CJZ1   A0A1S3JP97   A0A151XAL8   A0A0A9Y731   A0A195B763   A0A146MCN6   A0A195FG53   A0A146KPP7  

PDB

2A1I     E-value=1.95811e-45,     Score=458

KEGG

101743797    K10849 DNA excision repair protein ERCC-1 | (RefSeq) DNA excision repair protein ERCC-1

PATHWAY

03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03460    Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0006281   GO:0003684   GO:0004519   GO:0005634   GO:0070522   GO:0000014   GO:0006296   GO:0000710   GO:0006312   GO:0000110   GO:0070914   GO:0003697   GO:0032991   GO:0000712   GO:0046982   GO:0006289   GO:0017111   GO:0007131   GO:0006772   GO:0003677   GO:0001664   GO:0005525   GO:0016491   GO:0003824  

PANTHER

PTHR12749  

Length:

276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00209

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00667

outside

1  -  276

 

 

Pi

305.634237

Theta

223.648376

Tajima's D

1.223312

CLR

0

CSRT

0.718314084295785

Interpretation

Possibly Positive selection