Silkworm Genome Informatics Database

Gene

KWMTBOMO05233

Pre Gene Modal

BGIBMGA002427

Annotation

PREDICTED:_Fanconi_anemia_group_M_protein_[Amyelois_transitella]

Location

Bomo_Chr9(-):11659359-11676870 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.259

CDS

ATGAATAATTCAAAAAATTGTAGGGACGAAAAAGTTATTGATGAATACGAAGATGATGAAGTATTTGATGATTCTACATTTTTGGCGAATTTTGCAAACACTTCCTTCGATAAACCTAAGTTGCACGTAAAAACCTCAAATGGATCATTAAATAAAAATGATTTGAATGTAAGTGCATTATGTTGTGATGAGGAGTTAAATGGCTATGACAAACTATTAGGACAAACATGGATTTACCCAACAAACTATCCAGTCAGAGATTATCAGTTCAATATCATAAATGCTGCACTAGTGAAAAACACTTTGGTGAGTCTGCCCACAGGCTTGGGCAAGACATTCATAGCAGCTGTTGTTATGTACAATTTCTACAGATGGTATCCACTAGGCAAGATTGTTTTTACAGCACCCACCAGACCACTTGTGGCTCAACAAATAGATGCCTGTTATAATATTGTAGCTATACCGCCGAGGGATACTATAGAAATGACAGGTCACATGCAAACCTCGACAAGAAAATTACACTGGCAAAATAAAAGGGTATTCTTTGCCACTCCACAAGTTATATACAATGACATAAAATCAGGTATATGTCCTGGAGATAAGATCCGTTGTTTGGTAATAGATGAAGCTCATAGAGCTAGGAAGAATTATGCATACTGTCAGATTATTAATGCCTTAGATGATATGGGACACAAGACATATAGGATATTGGCATTATCTGCAACACCAGGTAGTAAAGTGGATGATGTTGTCAATGTTGTGAAAAGTTTGCATATAGCAAATTTAGAACTGCGATCAGAAGAGTGCATAGACGTGGCACGTTACAGTCATTCTCGAAAAATCAACACGGTTATTATACCTTTAGGAACAGAGCTGACTCACCTGAAACAAAGATATGTTGAGATTCTAGACTGTTATGCAAGACGACTGAAACAATTGAACATTCTGCCCCAGAATCTAGGAAATTTATCAAAAGGGAGAATAGTCATGATGTACAAAGACTTCCAAACGAAAGACCGCAGTAATAGGCATCCACAACACAACTACATTATGAAAGATTTCATGATGCTCATCGCTCTATTCCACGGGCTCGAACTCTTAACCAAGCATGGTTCGAGAGTATTCCTGAATTTCTTTGATGAGCACCCTGAAAAGTCATGGATTCAGTCGGATGATAAATTAACGGGACTTTTGGAACAGCTGAGAGACGATTTAGGCATCAATCCTATGTCTTTGAATACCAGCATTTTGCCCGATGGAACTATACCGGAGATTCCTAAAAATTTAAGTTTTGGCCATCCCAAATTCTATAAGTTGAAAGAAATAATGATGGAACATTTCACGAAGGCCCAACAAAATGGGCAGGACACTAGGGCCATTGTGTTCTGTGAATATCGCGAGAGTGTGAACTTGGTGCACTGTCTGCTGCTGCAGTGTCGTCCTCTCATTACTCCTCAGACGTTTGTCGGACAAGGAGCTTCAGGTAAGGACGGCAGGACGGTGGTGTCGCAGCCGCAGCAGCTGCGCGTGATGCGTGCGTTCCGCGCGGGCGCGTGCAACACGCTCGTCGCCACGTGCGTCGCCGAGGAGGGACTGGACGTCGGCTCCGTCGACCTCATCCTCTGCTTCGACATCTCCACGAGGTCGCCCGTCAGGCTCGTGCAAAGGTGCGGTAGGACGGGTCGCGAACGTGGAGGACAAGTGTATATTCTAGTCACGGAAGGAAGGGAGCATCAGACATTAATGGATTGTATGCGTCAAAGGGACGGACTGAACGCGAAACTGTTGCAGTCAAACGAAATCAAGGAGAGCCTTTACAAGCGCAACCCGCGCATGATGCCGCACGACTTCACGCCCAAATGTCAAATGTTGCACATCACGGTCGCCAAGAGAAACGAAACGAAACAAAACAATGAGAATTGTAAAAAGGGTCAGAAGAACATTCGTTCAATGCTGCTAAGCAAATCGAAGGAGCCTTCGAATACAACGAAAAAATCGAAAGGCAAATCGGAACTCATAACAAATGAACAATACGGCAAATTGTCGCCCGAGACCATCTCTGAGAATAAATACTTTGCTGAACACAAAGAATACTGGTCCATGGACAGAGAAACATATCTAAAGGATGATAGTAATGTTGAAACAAATTTGGATATGTCGAAGTGGTTGGAACTGCAGAGAACTCTACAGGACACTGTGAACGTTGAACATTCGGAGGACACAGTTCTTCTGACCGAACTACTTCAGTTCAGTAAAACGAAAAAAAACGAATTGAAAAATTCACAGAACAGTCTCGCTTCACAAGAATTCCTCACAAAATTGCAAAAGCCCTCTCCGGTTAAATCGAAACAGGCAAGAAAGAGACAAAAGATAACGCACTCGCCCGGGAAAAAGAACGGAGACATCAGGGCTTTGTTCAGCACGGCGACCAAGTCGACCAAAAGCTACACGAAATTAATCAACGATTTAGGCCTCCAAAATGATAACACAGCACCCGTTGCCTTCGTCGACCTTCTTGTGGATTTGAACTTAAATAACTCGAAATCTGAGAACAAATGTTATATCTGTGAAAACTTGTGCGAATGTAAAATTTTCAATGGCGTATCAGACAAAAAACAAACTTCCGGTCTTTTGATCAATTTGAATGAAATAAATTTACCTGATGTAGATCTAATCGATTACATTTCTTCGAAGTCTATTAGTGAATACCGGAATAGGGCTGTCGAGGATCGAGCTTCACCTGACGTCAACAAAACAGATTTAGCTGAAAAAAATGTTTCAGCTAACTTTGATTTAGACTTGGAATTCGACTCACAGATCTTTAGTGAGAAATCGAATGACAATGAATTTGAAAAAGATGAGGTGAATAGAGAGAACAATTTTGATATAGGAGAACTTCATGATATATTTGCCAACAGTAGTCCTTTGGACAATTTTGAAGCTGAAAAAACTGATAAACCCCAAGAAAATGAGAAGAAGGTACTGAGTTTCTTCGGTCTCGACAGCGTTGAAGATATATTTGCCGATTACGAAGATAGTTTCGATAAGAAATGCGACGAACCAGAGATGAAAGATATCGAGGCAGATAAAACTGATGATGTGACATTCCTAAACGTTCGTTCCACAACAGAAACTCACAAACCAATGCCAGATGAAAATCCGTTAAGTCCATCTATTTTATCTGGAAGAGTTAAAGTTAAAGAACAGGTGACGTCGCCTATACTCTGTTCTCAAAAACGCAAATTCGAGCTGAGCACCAAGAAAGAGATACATCGGAACTCTACACCGATCGCTAAAAAGAGTCTATTATTTGATAAAATAGACAACAATGCAAGTTCTAAAAATAAAAATACATCAAACACAACCGAAGATAGTATGTTTACAATAACACAAGTACTTGAATTAATTAACAAAACAAAAGACGAGAAAGCACTTGCATCGGTAGCTACACATTCAAAAACTGATATAAACGACAATGAGGATAATTTATGCGTTTCTCCTATTCTACCATCACAGACTGAACGCAAGAAGTTAACCGATTTGGCGAAATCTAATAGAAACTCTTTTTCCAGAGATCTTTCACAAAAGTCCAGTATAATAATTTCAGATAGTGACAGCGATTCCAAGGACACAGTCATCTATGATGCGGCTGATGTATTTGGCAAAAGCGAACGTGAAAATAATAGTGAAAGTGGCGGCTCGATTTCTCATTCCGACAAAGTTTCTAGTTTAATGCAAGATAAATTCTCTGTACAAATTGACTCTAAACGTAAATTAGAAATGGACGATGACGAGATAGCTTCTCCGTATTTTAATAAAAAACCAAAGTTAACAAAGAGCCCCGACAAACAGAGAACATTAAAAGAAAAGATTTTGGCTTCCGTTAGTTCGTTCAAGGTTAAACAAAAGTTCGATAACTTCCATTGCTCCGTTTCCCAAAGCAACGTCTTGTCGCAAAAGGAAAATAGAAATCCACAATTTGCTTCTCAATTCGCGAAAACTACAAGCGCTACCGAGAAAGATGTTAAAGGAAATTTGGAGTTCCTACAAAACTATCGACGCGATCCAAATAAGCTGCAACAAAGCTTAATGAATAAGTTTAGTACAATATTTAATAATAGAAGCCCTGAGAAATTACAATCACCGCAAAAACGCAAAATTGCTTTAGACGATAGCGATGACGATTTCATCTTAGATGATAAAAATAAATTTGCCGACAGTCCCGCGCGAAACTGTTCGCTCAAAACAATCAAAATTAAAAAAAAAAAAAAGAAATGTAACTCTTACTTGGATCTGGAAGCGGAACTGTCTGATGAAGATGATCGCGACAGTGGTGATGAACTGTCAGACGAAAGCGTCGGTAGTATCATCGACTTCATATGTGACGACAACGTAACGCAACACGAGGATGTGCAGGCACTTTACCTCAAAACAACAAAGAGTCCCCTAAAACAGGGTGGCTTCAAGATACCGGAGTTACCTAGAAGACTGAAGGAAGATATTTTATCGCAATTTGTTGAAGAAGATTCATACGAAATGGATAGTTTCTGTGTAGACTCTCATATTGGACTTACTCAAGTCAATGAAGTTTCTGCACTTGAAGTCGCGGAAATGGTTTTAGAAAAACGGAGAAAAAAGAAGAAAAAAAGTAGAATACAGGAGCCACAGTCTCCAGAAGCTGGTGACAGTCCTCTTGTGAAGCGAAGTAACAAAAATTGTAAGAGGTCAATACAAAGCGATTCGGATGACAGCAGCTGA

Protein

MNNSKNCRDEKVIDEYEDDEVFDDSTFLANFANTSFDKPKLHVKTSNGSLNKNDLNVSALCCDEELNGYDKLLGQTWIYPTNYPVRDYQFNIINAALVKNTLVSLPTGLGKTFIAAVVMYNFYRWYPLGKIVFTAPTRPLVAQQIDACYNIVAIPPRDTIEMTGHMQTSTRKLHWQNKRVFFATPQVIYNDIKSGICPGDKIRCLVIDEAHRARKNYAYCQIINALDDMGHKTYRILALSATPGSKVDDVVNVVKSLHIANLELRSEECIDVARYSHSRKINTVIIPLGTELTHLKQRYVEILDCYARRLKQLNILPQNLGNLSKGRIVMMYKDFQTKDRSNRHPQHNYIMKDFMMLIALFHGLELLTKHGSRVFLNFFDEHPEKSWIQSDDKLTGLLEQLRDDLGINPMSLNTSILPDGTIPEIPKNLSFGHPKFYKLKEIMMEHFTKAQQNGQDTRAIVFCEYRESVNLVHCLLLQCRPLITPQTFVGQGASGKDGRTVVSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDISTRSPVRLVQRCGRTGRERGGQVYILVTEGREHQTLMDCMRQRDGLNAKLLQSNEIKESLYKRNPRMMPHDFTPKCQMLHITVAKRNETKQNNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISENKYFAEHKEYWSMDRETYLKDDSNVETNLDMSKWLELQRTLQDTVNVEHSEDTVLLTELLQFSKTKKNELKNSQNSLASQEFLTKLQKPSPVKSKQARKRQKITHSPGKKNGDIRALFSTATKSTKSYTKLINDLGLQNDNTAPVAFVDLLVDLNLNNSKSENKCYICENLCECKIFNGVSDKKQTSGLLINLNEINLPDVDLIDYISSKSISEYRNRAVEDRASPDVNKTDLAEKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEVNRENNFDIGELHDIFANSSPLDNFEAEKTDKPQENEKKVLSFFGLDSVEDIFADYEDSFDKKCDEPEMKDIEADKTDDVTFLNVRSTTETHKPMPDENPLSPSILSGRVKVKEQVTSPILCSQKRKFELSTKKEIHRNSTPIAKKSLLFDKIDNNASSKNKNTSNTTEDSMFTITQVLELINKTKDEKALASVATHSKTDINDNEDNLCVSPILPSQTERKKLTDLAKSNRNSFSRDLSQKSSIIISDSDSDSKDTVIYDAADVFGKSERENNSESGGSISHSDKVSSLMQDKFSVQIDSKRKLEMDDDEIASPYFNKKPKLTKSPDKQRTLKEKILASVSSFKVKQKFDNFHCSVSQSNVLSQKENRNPQFASQFAKTTSATEKDVKGNLEFLQNYRRDPNKLQQSLMNKFSTIFNNRSPEKLQSPQKRKIALDDSDDDFILDDKNKFADSPARNCSLKTIKIKKKKKKCNSYLDLEAELSDEDDRDSGDELSDESVGSIIDFICDDNVTQHEDVQALYLKTTKSPLKQGGFKIPELPRRLKEDILSQFVEEDSYEMDSFCVDSHIGLTQVNEVSALEVAEMVLEKRRKKKKKSRIQEPQSPEAGDSPLVKRSNKNCKRSIQSDSDDSS

Uniprot

A0A060N485 H9IYU2 A0A2H1W717 A0A194RNU2 A0A194QD21

Pubmed

24286570 19121390 26354079

EMBL

AB766230 BAN29071.1 BABH01010808 BABH01010809 ODYU01006433 SOQ48274.1 + More
KQ459984 KPJ18995.1 KQ459220 KPJ02875.1

Proteomes

UP000005204 UP000053240 UP000053268

PRIDE

H9IYU2

Pfam

PF00271 Helicase_C + More
PF04851 ResIII

Interpro

IPR039686   FANCM/Mph1-like        + More
IPR001650   Helicase_C
IPR014001   Helicase_ATP-bd
IPR027417   P-loop_NTPase
IPR006935   Helicase/UvrB_N

SUPFAM

SSF52540 SSF52540

CDD

cd00079 HELICc

ProteinModelPortal

A0A060N485 H9IYU2 A0A2H1W717 A0A194RNU2 A0A194QD21

PDB

1WP9 E-value=7.2258e-46, Score=469

KEGG

101743653 K10896 fanconi anemia group M protein | (RefSeq) FANCM; Fanconi anemia group M protein

PATHWAY

03460 Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0003677 GO:0005524 GO:0006281 GO:0043140 GO:0016787 GO:0016020 GO:0006772 GO:0001664 GO:0005525 GO:0016491 GO:0003824

PANTHER

PTHR14025:SF20

Length:

1585

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

16.78561

Exp number, first 60 AAs:

0

Total prob of N-in:

0.74376

inside

1 - 100

TMhelix

101 - 123

outside

124 - 1585

Pi

210.910091

Theta

180.045567

Tajima's D

0.574776

CLR

0.430947

CSRT

0.534173291335433

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics