Gene

KWMTBOMO05207

Pre Gene Modal

BGIBMGA002464

Annotation

nuclear_factor_NF-kappa-B_p110_subunit_isoform_1_[Bombyx_mori]

Location

Bomo_Chr9(+):10939455-10961668      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.327

CDS

ATGGGCTCCGAGAGCGCCGTGGACCTACACTCGGTCGCCGGGAACGCGATGTGGAGCCCGAGTGCGCCCGTCGAGACGATGAGCGTCGAGCAGTTCCCGAATCTGCAACTGAATTCGACGGAGTTCGAAAAGATAATAACGAACGCCCTTCCGCCGGAGGAAAGGAACGACTTCACGGAATATGCCCTAAGTTCGTACGAATCGTTCGATGACATCGACGATGATCCAAATGGATGGAAGTTCATACGTACGTTACAGATGATGCAAACCGACTCTGCACGCAGTAGGCAGCAGACACCGCAGACTAGTAAACCCGCACTGAAAACTGTTGAACCCCAAGAGAGCTCAGACAGGACCGAGCTGAATGTACCGTCTGATGCGAAAGATGCAAACGAATATAGCGCTTATTACAACGCCCAAGACGGCCTCGAAGTGAAACAGCTACTAAGAGAACTGACGCAGATAATACGCAACAAGAAGGTTCATAAGAAACAAGAACTGAAAGACAAACTAAAGAGACTTTTCGACATAAGACTTTCGAACGGCGACACGTACCTCCACATGATACTGTGCAGCAATCAATCCAGCATAGCGAACATGGTGACGATAATTGACAGCGTTAAAATGACCCACCTCTTGGACTACAGGAATTTGAAACTACAGACGTTACTGCATACCGCCATAGCTAATGACTTGTCCCATTACGTGACATTACTAGTATCAAAAGGAAGCAGCGTGAGTTTGCAAGATGTAGCCGGCGACACCGCGTTCCACTACGCGGCCAAAAGTCACAAGTGCTTGGAGCCGCTACTAGCCGCAGTCAAGAAGCATAACATACCGTTCGACTTGAACACTTATAATTACGAAAAACAAGCGCCTCTGCACTTGGCGAGGACGGGACAGAACGCGCGCCATCTACTGGAGAGCGGCGCCGACCACCGCGTGCGTGACATGCACGGCCGCACGCCGCTCCACCTGGCCGCCTACGACAGTCGCCTCGCGCTTGTCGCCGCCCTGCTGGACTACATACCCTCGAAAGAAATAGATGCAACCGATGAATCAGGCAACACAGCACTACAGATTGTTTGTGGCGGGCCCTTAAGACAGAACTCCGTGGAGATCGTCAAACTATTACTTGCGAAAAAGGCCGATCCTAACTTTCACGGCGCTCAGAAAGAATCTGCCTGGAAAATGTCTGCCGATAAACCTGAACTAAGAGCCCTTCTCTTGGAAGCTATCGCCTTCGAAGACGGCTTCGAGAATAATAGTGTGAAATCTGAACTCGATGACGAAATCAAGTCTGAACCTGATGACGAGATCAAGTCTGAACCCGAGGACGATTACGATTCAGCTGATGAAGGCGAGGAAACAAGTGGCAGCACGGCACTAGACGGCATGGGTCAGTACTTGGGCGAGGTGAGCTCGCTGCTGGACCGGTCGGGCAGCTGGCAGGAGCTAGCGGGCAGGCTGCGTCTCGACTCGCTGCTCTCCCTGTACTGCGCGCAGCCCAGCCCCACGCACACGCTGCTGCTGCATCTCAAGGAATACAATGAAATATCATCGAAATCGTTAGCATTCATCCTAGAAGATATGGGAGAGTTAGAAGCGGCTGAAGTTATAAGAAGATACGTTGAATAA

Protein

MGSESAVDLHSVAGNAMWSPSAPVETMSVEQFPNLQLNSTEFEKIITNALPPEERNDFTEYALSSYESFDDIDDDPNGWKFIRTLQMMQTDSARSRQQTPQTSKPALKTVEPQESSDRTELNVPSDAKDANEYSAYYNAQDGLEVKQLLRELTQIIRNKKVHKKQELKDKLKRLFDIRLSNGDTYLHMILCSNQSSIANMVTIIDSVKMTHLLDYRNLKLQTLLHTAIANDLSHYVTLLVSKGSSVSLQDVAGDTAFHYAAKSHKCLEPLLAAVKKHNIPFDLNTYNYEKQAPLHLARTGQNARHLLESGADHRVRDMHGRTPLHLAAYDSRLALVAALLDYIPSKEIDATDESGNTALQIVCGGPLRQNSVEIVKLLLAKKADPNFHGAQKESAWKMSADKPELRALLLEAIAFEDGFENNSVKSELDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLDRSGSWQELAGRLRLDSLLSLYCAQPSPTHTLLLHLKEYNEISSKSLAFILEDMGELEAAEVIRRYVE

Uniprot

A7BJ65   A0A059XSW9   G3LF45   A0A194RSC1   A0A194QHC6   A0A2A4IV30   + More
A0A059XNQ1   A0A345CI06   A0A212ESP0   E0X903   A0A1S3J4M4   A0A1S3J667   A0A1S3J4Z6   Q2N406   Q2N407   Q2N400   Q2N409   Q2N401   Q2N408   Q2N402   Q2N3Z9   A0A2J7Q2V8   Q2N404   A0A0U1T4P2   Q2N405   A0A2J7Q2W8   A0A2J7Q2W5   Q2N403   Q2N3Z8   A0A346QR71   W5N2M3   W5N2L1   V9KDN3   A0A2A3ETK9   A0A3Q1G4Q5   A0A3Q1EPL5   A0A3P8Q507   S5DIK7   F4WF21   A0A087ZPI1   A0A091DPY4  

Pubmed

17714806    26354079    22118469    20670337    16221893    24402279    + More
23817412    21719571   

EMBL

AB298441    BAF74125.1    KJ576789    AIA24468.1    JN315690    AEO51739.1    + More
KQ459984    KPJ18966.1    KQ459220    KPJ02846.1    NWSH01007017    PCG63134.1    KJ576790    AIA24469.1    MF797867    AXF67445.1    AGBW02012778    OWR44464.1    GQ871279    ADM14334.1    DQ058901    AAZ08471.1    DQ058900    AAZ08470.1    DQ058907    AAZ08477.1    DQ058898    AAZ08468.1    DQ058906    AAZ08476.1    DQ058899    AAZ08469.1    DQ058905    AAZ08475.1    DQ058908    AAZ08478.1    NEVH01019075    PNF22925.1    DQ058903    AAZ08473.1    KF662471    AGZ84432.1    DQ058902    AAZ08472.1    PNF22926.1    PNF22924.1    DQ058904    AAZ08474.1    DQ058909    AAZ08479.1    MG910473    AXR98461.1    AHAT01017793    AHAT01017794    JW863416    AFO95933.1    KZ288186    PBC34834.1    KF006940    AGQ17410.1    GL888115    EGI67072.1    KN122182    KFO32315.1   

Proteomes

UP000053240    UP000053268    UP000218220    UP000007151    UP000085678    UP000235965    + More
UP000018468    UP000242457    UP000257200    UP000265100    UP000007755    UP000005203    UP000028990   

PRIDE

A7BJ65   

Pfam

PF00554   RHD_DNA_bind        + More
PF16179   RHD_dimer
PF00023   Ank
PF12796   Ank_2
PF00531   Death
PF12783   Sec7_N
PF01369   Sec7

Interpro

IPR032397   RHD_dimer        + More
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR037059   RHD_DNA_bind_dom_sf       
IPR008967   p53-like_TF_DNA-bd       
IPR002110   Ankyrin_rpt       
IPR033926   IPT_NFkappaB       
IPR013783   Ig-like_fold       
IPR000451   NFkB/Dor       
IPR011539   RHD_DNA_bind_dom       
IPR014756   Ig_E-set       
IPR002909   IPT_dom       
IPR011029   DEATH-like_dom_sf       
IPR030503   NF-kB_p105       
IPR000488   Death_domain       
IPR030492   RHD_CS       
IPR016024   ARM-type_fold       
IPR000904   Sec7_dom       
IPR032691   Sec7_N       
IPR035999   Sec7_dom_sf       
IPR023394   Sec7_C_sf       

SUPFAM

SSF48403   SSF48403        + More
SSF49417   SSF49417       
SSF81296   SSF81296       
SSF47986   SSF47986       
SSF48371   SSF48371       
SSF48425   SSF48425       

Gene 3D

1.25.40.20     2.60.40.10     2.60.40.340     1.10.1000.11    

CDD

cd01177  IPT_NFkappaB
cd00204  ANK
cd00171  Sec7

ProteinModelPortal

A7BJ65   A0A059XSW9   G3LF45   A0A194RSC1   A0A194QHC6   A0A2A4IV30   + More
A0A059XNQ1   A0A345CI06   A0A212ESP0   E0X903   A0A1S3J4M4   A0A1S3J667   A0A1S3J4Z6   Q2N406   Q2N407   Q2N400   Q2N409   Q2N401   Q2N408   Q2N402   Q2N3Z9   A0A2J7Q2V8   Q2N404   A0A0U1T4P2   Q2N405   A0A2J7Q2W8   A0A2J7Q2W5   Q2N403   Q2N3Z8   A0A346QR71   W5N2M3   W5N2L1   V9KDN3   A0A2A3ETK9   A0A3Q1G4Q5   A0A3Q1EPL5   A0A3P8Q507   S5DIK7   F4WF21   A0A087ZPI1   A0A091DPY4  

PDB

6MOJ     E-value=1.93434e-12,     Score=177

KEGG

100124425    K02580 nuclear factor NF-kappa-B p105 subunit | (RefSeq) Rel, BmRelish, BmRelish2, Bmrelish1, relish

PATHWAY

04624    Toll and Imd signaling pathway - Bombyx mori (domestic silkworm)
04933    AGE-RAGE signaling pathway in diabetic complications - Bombyx mori (domestic silkworm)

GO

GO:0003700   GO:0005634   GO:0005737   GO:0003677   GO:0007165   GO:0006357   GO:0005086   GO:0032012   GO:0005515   GO:0006355   GO:0001664   GO:0005525   GO:0016491   GO:0003824  

PANTHER

PTHR24169   PTHR24169:SF9  

Length:

545

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00334

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.00067

outside

1  -  545

 

 

Pi

245.588296

Theta

188.703917

Tajima's D

1.034871

CLR

0.00025

CSRT

0.672066396680166

Interpretation

Possibly Positive selection