Gene

KWMTBOMO05203  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002461

Annotation

PREDICTED:_ribulose-phosphate_3-epimerase_[Papilio_machaon]

Location

Bomo_Chr9(+):10896285-10899949      View in EpiBrowser

Full name

Ribulose-phosphate 3-epimerase      

Location in the cell

Cytoplasmic   Reliability : 3.195

CDS

ATGACTCGTCATTTAAAAGCGCTTATTGGACCTTCAATTCTCAATGCTGATTTATCTCAATTATATGAAGAATCTCAAAAGTTGCTTGATAATGGAGCAGATTATTTACATTTAGATGTAATGGATGGTCAGTTTGTACCTAACTTAACCTTTGGTCACCCTGTAGTGAAGTGCCTTCGAGGAAAAATAAAAGATGCCTTTTTTGAAACTCACATGATGGTTGAGAAACCAGAGCAATGGATAACACCAATGGCTGATGCTGGAGTCAATCAATACACATTTCATATAGAACCTGTCAAAGATGTAATAGAAGTGTGCAGAAAAGTTAGAGAGCACGGAATGAAGGTAGGAGTTGCAATAAAGCCTGGAACTCCTGTTTCTGAAGTTGAAAAATATATTTCTATATCAGACATGGTCTTAATAATGACCGTTGAACCAGGGTTTGGTGGCCAGAAGTTTATGGAGAATCAAATGGCCAAAGTGCAATATTTAAGAGAGAATTACCCATTACTGGATATTGAAGTAGATGGTGGTGTAGGGCCATCAACAATAAATTGCTGTGCCAATGCAGGAGCCAACATGATAGTCTCAGGGACAGCCATAATTGGATCAGCAGACCAAGCTGCTACTATAAAATTACTACGAAGTACTGTACAGGATGCAATAAACAAATAA

Protein

MTRHLKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDAINK

Catalytic Activity

D-ribulose 5-phosphate = D-xylulose 5-phosphate

Cofactor

a divalent metal cation

Similarity

Belongs to the ribulose-phosphate 3-epimerase family.

Uniprot

S4PMY2   A0A212ESK6   A0A2H1W3I0   A0A194RMB0   A0A194QBC6   H9IYX6   + More
A0A182QXY0   E2AB06   B0WUH1   E2BKZ6   A0A1Q3F9A8   A0A182NLZ4   Q1HQW3   A0A158NZH6   A0A0J7NTC6   A0A182G3T3   A0A182PLD2   A0A182IUT6   Q16SS1   A0A195BMV0   A0A182X4A5   A0A182UPM0   A0A182HPA9   A0A1S4FQG0   A0A182TSY8   A0A026WC88   A0A2M4AFQ9   A0A182LB88   Q7Q9R5   A0A2A3E4H5   E9J739   K7IT39   A0A182RA31   A0A232FLL2   A0A084WJG3   A0A336LCE8   A0A0K8TNM9   A0A336MYN2   B4P1R8   B4N659   A0A151I6G5   A0A1W4VCL8   A0A182UA19   A0A182JW83   A0A182WB67   A0A1B0D3G6   B4HR37   A0A182YFQ0   B3N9X0   A0A1J1IX28   Q95RV5   B4QEP0   A0A1W4XRA1   A0A2M3ZBG5   A0A2M3ZBC4   W5J9H9   A0A1B6DQC7   A0A2M4BYZ1   A0A182FL81   D6X4M7   B4KPQ0   A0A1L8E1P1   A0A1L8E1W1   A0A2S2QEM3   B4J7Y3   A0A1B0CE44   B4H8J3   Q28YJ4   A0A1I8P9Z4   A0A151JFL4   A0A195FCB1   T1PI21   U5EUM0   A0A1I8NE87   A0A3B0JK38   A0A1Y1LNC3   A0A1L8ECJ2   A0A2P8Z7A7   F4WL89   A0A0L0C1L0   A0A0M5J7E8   N6U9J0   B3MHQ9   A0A067RDU1   B4LJ89   A0A1B6FFY3   A0A2S2PTL6   A0A1B6K113   A0A2J7PDV7   A0A034WWR0   A0A0K8VBE2   J9JUH0   A0A0A1XGV4   A0A069DQZ9   A0A146MCV4   A0A0A9WHL3   A0A0K8T1K9   A0A310SU85   W8BGZ2   A0A023F8E6  

EC Number

5.1.3.1

Pubmed

23622113    22118469    26354079    19121390    20798317    17204158    + More
21347285    26483478    17510324    24508170    30249741    20966253    12364791    14747013    17210077    21282665    20075255    28648823    24438588    26369729    17994087    17550304    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    20920257    23761445    18362917    19820115    15632085    25315136    28004739    29403074    21719571    26108605    23537049    24845553    25348373    25830018    26334808    26823975    25401762    24495485    25474469   

EMBL

GAIX01003295    JAA89265.1    AGBW02012778    OWR44467.1    ODYU01005802    SOQ47054.1    + More
KQ459984    KPJ18963.1    KQ459220    KPJ02843.1    BABH01010717    AXCN02000957    GL438234    EFN69282.1    DS232105    EDS34953.1    GL448858    EFN83617.1    GFDL01010942    JAV24103.1    DQ440331    ABF18364.1    ADTU01004623    LBMM01001837    KMQ95670.1    JXUM01007035    KQ560229    KXJ83726.1    CH477667    EAT37514.1    KQ976433    KYM87305.1    APCN01002939    KK107293    QOIP01000005    EZA53286.1    RLU23187.1    GGFK01006299    MBW39620.1    AAAB01008900    EAA09374.3    KZ288376    PBC26663.1    GL768421    EFZ11359.1    AAZX01006711    NNAY01000061    OXU31400.1    ATLV01024026    KE525348    KFB50357.1    UFQS01002690    UFQT01002690    SSX14541.1    SSX33942.1    GDAI01001860    JAI15743.1    UFQS01002612    UFQT01002612    SSX14362.1    SSX33773.1    CM000157    EDW89204.1    CH964154    EDW79848.1    KQ978473    KYM93689.1    AJVK01023537    CH480816    EDW46780.1    CH954177    EDV59666.1    CVRI01000059    CRL03718.1    AY061110    AE013599    AAL28658.1    AAM71098.1    CM000362    CM002911    EDX06036.1    KMY92018.1    GGFM01005059    MBW25810.1    GGFM01005061    MBW25812.1    ADMH02002077    ETN59515.1    GEDC01025894    GEDC01009421    JAS11404.1    JAS27877.1    GGFJ01009145    MBW58286.1    KQ971380    EEZ97576.1    CH933808    EDW09160.2    GFDF01001434    JAV12650.1    GFDF01001386    JAV12698.1    GGMS01006930    MBY76133.1    CH916367    EDW02213.1    AJWK01008545    CH479223    EDW35028.1    CM000071    EAL25971.1    KQ979021    KYN24363.1    KQ981685    KYN38048.1    KA647780    AFP62409.1    GANO01002258    JAB57613.1    OUUW01000001    SPP75720.1    GEZM01052558    GEZM01052557    JAV74441.1    GFDG01002372    JAV16427.1    PYGN01000164    PSN52377.1    GL888207    EGI65052.1    JRES01001012    KNC26147.1    CP012524    ALC42036.1    APGK01043770    KB741017    ENN75267.1    CH902619    EDV36896.1    KK852570    KDR21168.1    CH940648    EDW61525.2    GECZ01020653    JAS49116.1    GGMR01020106    MBY32725.1    GECU01002576    JAT05131.1    NEVH01026136    PNF14513.1    GAKP01000185    JAC58767.1    GDHF01016147    JAI36167.1    ABLF02020556    ABLF02020557    ABLF02020558    ABLF02045965    GBXI01003668    JAD10624.1    GBGD01002812    JAC86077.1    GDHC01001045    JAQ17584.1    GBHO01036708    JAG06896.1    GBRD01006545    JAG59276.1    KQ760123    OAD61855.1    GAMC01010307    GAMC01010304    GAMC01010302    JAB96248.1    GBBI01001096    JAC17616.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000005204    UP000075886    UP000000311    + More
UP000002320    UP000008237    UP000075884    UP000005205    UP000036403    UP000069940    UP000249989    UP000075885    UP000075880    UP000008820    UP000078540    UP000076407    UP000075903    UP000075840    UP000075902    UP000053097    UP000279307    UP000075882    UP000007062    UP000242457    UP000002358    UP000075900    UP000215335    UP000030765    UP000002282    UP000007798    UP000078542    UP000192221    UP000075881    UP000075920    UP000092462    UP000001292    UP000076408    UP000008711    UP000183832    UP000000803    UP000000304    UP000192223    UP000000673    UP000069272    UP000007266    UP000009192    UP000001070    UP000092461    UP000008744    UP000001819    UP000095300    UP000078492    UP000078541    UP000095301    UP000268350    UP000245037    UP000007755    UP000037069    UP000092553    UP000019118    UP000007801    UP000027135    UP000008792    UP000235965    UP000007819   

PRIDE

H9IYX6    Q95RV5   

Pfam

PF00834   Ribul_P_3_epim

Interpro

IPR000056   Ribul_P_3_epim-like        + More
IPR013785   Aldolase_TIM       
IPR026019   Ribul_P_3_epim       
IPR011060   RibuloseP-bd_barrel       

SUPFAM

SSF51366   SSF51366       

Gene 3D

3.20.20.70    

CDD

cd00429  RPE

ProteinModelPortal

S4PMY2   A0A212ESK6   A0A2H1W3I0   A0A194RMB0   A0A194QBC6   H9IYX6   + More
A0A182QXY0   E2AB06   B0WUH1   E2BKZ6   A0A1Q3F9A8   A0A182NLZ4   Q1HQW3   A0A158NZH6   A0A0J7NTC6   A0A182G3T3   A0A182PLD2   A0A182IUT6   Q16SS1   A0A195BMV0   A0A182X4A5   A0A182UPM0   A0A182HPA9   A0A1S4FQG0   A0A182TSY8   A0A026WC88   A0A2M4AFQ9   A0A182LB88   Q7Q9R5   A0A2A3E4H5   E9J739   K7IT39   A0A182RA31   A0A232FLL2   A0A084WJG3   A0A336LCE8   A0A0K8TNM9   A0A336MYN2   B4P1R8   B4N659   A0A151I6G5   A0A1W4VCL8   A0A182UA19   A0A182JW83   A0A182WB67   A0A1B0D3G6   B4HR37   A0A182YFQ0   B3N9X0   A0A1J1IX28   Q95RV5   B4QEP0   A0A1W4XRA1   A0A2M3ZBG5   A0A2M3ZBC4   W5J9H9   A0A1B6DQC7   A0A2M4BYZ1   A0A182FL81   D6X4M7   B4KPQ0   A0A1L8E1P1   A0A1L8E1W1   A0A2S2QEM3   B4J7Y3   A0A1B0CE44   B4H8J3   Q28YJ4   A0A1I8P9Z4   A0A151JFL4   A0A195FCB1   T1PI21   U5EUM0   A0A1I8NE87   A0A3B0JK38   A0A1Y1LNC3   A0A1L8ECJ2   A0A2P8Z7A7   F4WL89   A0A0L0C1L0   A0A0M5J7E8   N6U9J0   B3MHQ9   A0A067RDU1   B4LJ89   A0A1B6FFY3   A0A2S2PTL6   A0A1B6K113   A0A2J7PDV7   A0A034WWR0   A0A0K8VBE2   J9JUH0   A0A0A1XGV4   A0A069DQZ9   A0A146MCV4   A0A0A9WHL3   A0A0K8T1K9   A0A310SU85   W8BGZ2   A0A023F8E6  

PDB

3OVR     E-value=2.01484e-74,     Score=707

KEGG

101741451    K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] | (RefSeq) ribulose-phosphate 3-epimerase

PATHWAY

00030    Pentose phosphate pathway - Bombyx mori (domestic silkworm)
00040    Pentose and glucuronate interconversions - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)
01230    Biosynthesis of amino acids - Bombyx mori (domestic silkworm)

GO

GO:0005975   GO:0006098   GO:0004750   GO:0046872   GO:0016857   GO:0009052   GO:0019323   GO:0044262   GO:0005829   GO:0003824   GO:0008152   GO:0001664   GO:0005525   GO:0016491  

PANTHER

PTHR11749  

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04567

Exp number, first 60 AAs:

0.00077

Total prob of N-in:

0.07103

outside

1  -  224

 

 

Pi

168.735063

Theta

174.093986

Tajima's D

-0.464843

CLR

0.289526

CSRT

0.251137443127844

Interpretation

Uncertain