SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05202
Pre Gene Modal
BGIBMGA002440
Annotation
putative_sol_i_3_antigen?_partial_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 1.684 Nuclear   Reliability : 1.455
 

Sequence

CDS
ATGCTCACAACAACTTCTAAATCAACTGAACAAGATTTAGTTAATTCTACTCTTCTAACAGATTTGGTTAAAGCTGTTATTTTCAGAGGTAATTCTCACGTAACCGAAGAAGTTACAGAAAGCACGTATAGTGTAAACGGTATTAATCCGATAAGAATACAAGCAGAGCTATCAGAAATTAAACCAAATACAGAGTTTACAGGACATTTCTTTTATCCCGAAGATGTTGACAATGGAGATGAAATTGAGAACAGCACTGAACTCTATTACGATACAACTAATTTAGCTGTATCAGATATTGTGCAGGAAATAGAAGAAATAAGGAAGTCCACAACTGTCAAGGACTTTTTAGGAGAAATCTTAGATTCCGATGAAGTCACTGAAGATGCAAATGCTTTTGGTGTCATCATGGCAAATGAAACTCCAACTGAACATAAAGTCTTGAAAAAGTTTATTGACGTAACAAATTGA
Protein
MLTTTSKSTEQDLVNSTLLTDLVKAVIFRGNSHVTEEVTESTYSVNGINPIRIQAELSEIKPNTEFTGHFFYPEDVDNGDEIENSTELYYDTTNLAVSDIVQEIEEIRKSTTVKDFLGEILDSDEVTEDANAFGVIMANETPTEHKVLKKFIDVTN

Summary

Similarity
Belongs to the CRISP family.
Pfam
PF00188   CAP
Interpro
IPR014044   CAP_domain        + More
IPR035940   CAP_sf       
IPR001283   CRISP-related       
IPR002413   V5_allergen-like       
SUPFAM
SSF55797   SSF55797       
Gene 3D

Ontologies

GO

Topology

Length:
156
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00285
Exp number, first 60 AAs:
0.00285
Total prob of N-in:
0.29577
outside
1  -  156
 
 

Population Genetic Test Statistics

Pi
236.997373
Theta
216.559142
Tajima's D
0.309788
CLR
1.583948
CSRT
0.453927303634818
Interpretation
Uncertain
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