Gene

KWMTBOMO05197

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(-):10725669-10726755      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.395

CDS

ATGGTCAGGAACGAAAGGCTATCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCTTGCATTGCGTCCCGCTCGATCTTCCGGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGAGACCTAAATTGTAAGCACATCAGGTGGAACTCACAAACCACAACCCTGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTAGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACATAACTCTGCGCTTACACTCGATCGAAGTAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCATTCCCGTCACGAGGACTGTGGTGGATTGGCACGCGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTACATAGATCATCGACACAAGTTGTAGCGGAGGACTTCCTTTACCGCTTCAAATTGCCCGACGATATTAGGGAACTCTTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTAG

Protein

MVRNERLSARGGGTVIYYRRALHCVPLDLPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSQTTTLNGRRLDALVDDLALDIVAPLTPTHYPLNIAHRPDILDIALLKNITLRLHSIEVELDSDHRPVVMKLGRAPDSIPVTRTVVDWHALGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLHRSSTQVVAEDFLYRFKLPDDIRELFRAKNASIRAYDR

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

Q9BPQ0   Q93137   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
X1WK15   X1WXR6   X1WNI2   A0A1Y1K0C8   A0A1B6MLS9   A0A0L7L9V8   X1X0M4   J9LC21   A0A2S2PPK8   A0A1Y1MZU1   X1WQI9   J9LR29   J9KKL6   J9KKD0   A0A139W8G9   J9MAR0   J9KRU7   A0A2S2P6H1   A0A087THU2   A0A0L7L3F7   A0A0L7KVB3   J9LFC9   V5GNJ2   A0A224X6Q4   A0A224XB44   A0A2M4AQV0   A0A2M4AQK3   J9LK81   J9KPF1   J9LLF7   A0A2S2P6S3   A0A2M4CV42   A0A2S2QEE0   J9LMI4   X1XPY2   A0A182FPZ5  

Pubmed

10333566    26354079    10380107    28004739    26227816    18362917    + More
19820115   

EMBL

AB055391    BAB21761.1    U07847    AAA17752.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    ABLF02012584    ABLF02013765    ABLF02024884    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    ABLF02008153    ABLF02008462    ABLF02008464    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GEBQ01003077    JAT36900.1    JTDY01002082    KOB72150.1    ABLF02065839    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMR01018716    MBY31335.1    GEZM01021868    JAV88847.1    ABLF02022418    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    ABLF02015632    ABLF02015633    KQ973342    KXZ75569.1    ABLF02037715    ABLF02010814    ABLF02010815    ABLF02037860    ABLF02037869    GGMR01012189    MBY24808.1    KK115285    KFM64681.1    JTDY01003188    KOB69997.1    JTDY01005246    KOB67202.1    ABLF02023911    GALX01005299    JAB63167.1    GFTR01008279    JAW08147.1    GFTR01008262    JAW08164.1    GGFK01009846    MBW43167.1    GGFK01009732    MBW43053.1    ABLF02023551    ABLF02023561    ABLF02041767    ABLF02005577    ABLF02009955    GGMR01012443    MBY25062.1    GGFL01005012    MBW69190.1    GGMS01006359    MBY75562.1    ABLF02027749    ABLF02058898    ABLF02009968    ABLF02049343    ABLF02056173    ABLF02063327    ABLF02065784   

Proteomes

UP000053268    UP000007819    UP000037510    UP000007266    UP000054359    UP000069272    + More

PRIDE

Q9BPQ0    Q93137    Q9XXW0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF14291   DUF4371
PF07530   PRE_C2HC
PF16211   Histone_H2A_C
PF00125   Histone

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR025398   DUF4371       
IPR006579   Pre_C2HC_dom       
IPR032458   Histone_H2A_CS       
IPR002119   Histone_H2A       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF47113   SSF47113       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     1.10.20.10     3.30.420.10    

CDD

cd00074  H2A

ProteinModelPortal

Q9BPQ0   Q93137   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
X1WK15   X1WXR6   X1WNI2   A0A1Y1K0C8   A0A1B6MLS9   A0A0L7L9V8   X1X0M4   J9LC21   A0A2S2PPK8   A0A1Y1MZU1   X1WQI9   J9LR29   J9KKL6   J9KKD0   A0A139W8G9   J9MAR0   J9KRU7   A0A2S2P6H1   A0A087THU2   A0A0L7L3F7   A0A0L7KVB3   J9LFC9   V5GNJ2   A0A224X6Q4   A0A224XB44   A0A2M4AQV0   A0A2M4AQK3   J9LK81   J9KPF1   J9LLF7   A0A2S2P6S3   A0A2M4CV42   A0A2S2QEE0   J9LMI4   X1XPY2   A0A182FPZ5  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0046982   GO:0000786   GO:0003677   GO:0005634   GO:0003676  

Subcellular location

Chromosome  
Nucleus  

Length:

261

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09179

Exp number, first 60 AAs:

0.06507

Total prob of N-in:

0.17826

outside

1  -  261

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.300876

CSRT

0

Interpretation

Uncertain