Gene

KWMTBOMO05186

Pre Gene Modal

BGIBMGA002449

Annotation

PREDICTED:_ras-related_protein_Rab-8A_[Papilio_polytes]

Location

Bomo_Chr9(-):10395890-10402464      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.29

CDS

ATGGCTTTAGATTTTTCCGCTACGTATAAACTGTTGGTCTTAGGTGATTCTAACGTAGGTAAAACGTGTATAGTTCACAGGTACTGTGACGAGAGGTATTATGATATTTACATATCCACAATAGGAATAGATTTCAAACAAAAAATAATAAACTTGGACGGTGTGCCTATTAAGCTTCAGATATGGGATACCGCAGGTCAAGAAAGGTTCCGCACACTGACCACTGCTTATTACCGTGGAGCTATGGGGATTATACTCATGTACGATATTACCAATTTGGAGTCGTTCAACCATTTGTCATATTGGCTCAGGAATATACAAGAGTACGCGTCTCCAGATGTCATTAAGGTGCTGGTGGGCAACAAATGCGACGTACATGAAAATCACAGAGCCGTTCCCAAGGATAGAGGTCAAAAGATTGCGGATGACTTCGATATGCCGTTTTTCGAAGTGTCTTGTAAGAACAACATAAATATAGAGGAGGCTTTCTTGACGTTGGCCAGAAAGATCAGAGAGTACCGGGAGACGAAGGCTGACGCATTTGAATTGAAGGAAAGAGACAACGTCGTCAAGCCTTCGGTTTCTGAAACTGACGCATCGAAATGCTTTTGTTAG

Protein

MALDFSATYKLLVLGDSNVGKTCIVHRYCDERYYDIYISTIGIDFKQKIINLDGVPIKLQIWDTAGQERFRTLTTAYYRGAMGIILMYDITNLESFNHLSYWLRNIQEYASPDVIKVLVGNKCDVHENHRAVPKDRGQKIADDFDMPFFEVSCKNNINIEEAFLTLARKIREYRETKADAFELKERDNVVKPSVSETDASKCFC

Uniprot

H9IYW4   A0A2H1VLR1   A0A194RNP1   A0A212EIN4   A0A194PFE4   W8B6B1   + More
A0A1Q3FYM8   Q16UA3   A0A182RUJ0   A0A067RBQ5   A0A182JM61   A0A182PIQ1   A0A3B0K6K3   Q29C11   B4GPC9   A0A182N9H1   A0A0C9REZ1   A0A182WBC0   A0A182QC03   A0A0K8TZE5   B4KAM8   A0A1I8M2F4   A0A182GPW7   B4M0Q5   B4JRJ1   A0A182Y840   B3LYA3   A0A1I8P7S0   A0A0L0CCL4   W5J5B4   A0A182FGS4   B4QTT3   Q9VC31   B4PV37   B4IJC7   B3P6Y0   A0A182WWB7   Q7QIH8   A0A182I6J6   A0A151X622   A0A1W4W2F5   B4NGQ1   A0A182L3V0   A0A1B0G2Z5   A0A1A9UQW1   A0A1A9ZWR8   F4WB26   A0A195BFH4   A0A195EYI9   A0A158NRD3   A0A1A9XK06   A0A1B0BTE1   A0A026X269   A0A151IAK3   A0A0M4F510   A0A1A9X1N6   A0A0A1XJ83   A0A151J5W6   A0A336LMI0   U5ETR9   E9IQ23   E2ADD1   A0A232FJF4   V9IIZ5   A0A087ZUG2   A0A0T6AVD0   A0A224Z694   K7J551   E2C0R8   A0A154PR04   A0A224Z7E1   A0A131YQX0   A0A131XLN8   A0A1L8DV66   A0A087UP71   D6WAF6   A0A1B6CHY4   A0A147BLA6   A0A1B6LX13   A0A1E1X0K4   A0A3Q0IPT9   A0A1L8DKX7   A0A2S2PG63   A0A182V5X4   A0A2S2QGM3   J9JP61   X1XLI0   A0A2H8TY07   V5HT64   A0A0M9A6N0   B0XGC6   A0A182LYE4   A0A1V9XLA0   R7UFL0   B8Y263  

Pubmed

19121390    26354079    22118469    24495485    17510324    24845553    + More
15632085    17994087    25315136    26483478    25244985    18057021    26108605    20920257    23761445    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    12364791    14747013    17210077    20966253    21719571    21347285    24508170    30249741    25830018    21282665    20798317    28648823    28797301    20075255    26830274    28049606    18362917    19820115    29652888    28503490    25765539    28327890    23254933   

EMBL

BABH01010651    BABH01010652    BABH01010653    ODYU01003069    SOQ41372.1    KQ459984    + More
KPJ18945.1    AGBW02014617    OWR41330.1    KQ459606    KPI91419.1    GAMC01013983    GAMC01013982    GAMC01013981    GAMC01013980    JAB92573.1    GFDL01002360    JAV32685.1    CH477627    EAT38113.1    KK852570    KDR21162.1    OUUW01000005    SPP81256.1    CM000070    EAL26835.1    CH479186    EDW39012.1    GBYB01006940    JAG76707.1    AXCN02000560    GDHF01032666    JAI19648.1    CH933806    EDW16765.1    JXUM01080379    JXUM01080380    JXUM01080381    JXUM01080382    JXUM01080383    KQ563182    KXJ74321.1    CH940650    EDW67347.1    CH916373    EDV94381.1    CH902617    EDV44007.1    KPU80583.1    JRES01000608    KNC29952.1    ADMH02002185    ETN57939.1    CM000364    EDX14287.1    AE014297    AAF56345.2    CM000160    EDW98886.1    CH480848    EDW51118.1    CH954182    EDV53800.1    AAAB01008807    EAA04246.2    APCN01003655    KQ982494    KYQ55750.1    CH964272    EDW84398.1    CCAG010003320    GL888056    EGI68581.1    KQ976504    KYM82959.1    KQ981923    KYN32972.1    ADTU01023932    JXJN01020100    KK107054    QOIP01000004    EZA61494.1    RLU24241.1    KQ978249    KYM96010.1    CP012526    ALC46925.1    GBXI01003342    JAD10950.1    KQ979928    KYN18613.1    UFQT01000016    SSX17839.1    GANO01002661    JAB57210.1    GL764659    EFZ17347.1    GL438749    EFN68547.1    NNAY01000117    OXU30802.1    JR049774    AEY61073.1    LJIG01022703    KRT79152.1    GFPF01011157    MAA22303.1    AAZX01005912    GL451846    EFN78462.1    KQ435012    KZC13784.1    GFPF01011156    MAA22302.1    GEDV01007612    JAP80945.1    GEFH01001319    JAP67262.1    GFDF01003774    JAV10310.1    KK120836    KFM79160.1    KQ971312    EEZ98626.2    GEDC01024249    JAS13049.1    GEGO01004319    JAR91085.1    GEBQ01011738    JAT28239.1    GFAC01006388    JAT92800.1    GFDF01006965    JAV07119.1    GGMR01015800    MBY28419.1    GGMS01007684    MBY76887.1    ABLF02032144    ABLF02005352    ABLF02005353    GFXV01006233    MBW18038.1    GANP01005221    JAB79247.1    KQ435724    KOX78320.1    DS233012    EDS27508.1    AXCM01009377    MNPL01008718    OQR74118.1    AMQN01007978    KB301890    ELU04995.1    FJ465177    ACK77788.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000008820    UP000075900    + More
UP000027135    UP000075880    UP000075885    UP000268350    UP000001819    UP000008744    UP000075884    UP000075920    UP000075886    UP000009192    UP000095301    UP000069940    UP000249989    UP000008792    UP000001070    UP000076408    UP000007801    UP000095300    UP000037069    UP000000673    UP000069272    UP000000304    UP000000803    UP000002282    UP000001292    UP000008711    UP000076407    UP000007062    UP000075840    UP000075809    UP000192221    UP000007798    UP000075882    UP000092444    UP000078200    UP000092445    UP000007755    UP000078540    UP000078541    UP000005205    UP000092443    UP000092460    UP000053097    UP000279307    UP000078542    UP000092553    UP000091820    UP000078492    UP000000311    UP000215335    UP000005203    UP000002358    UP000008237    UP000076502    UP000054359    UP000007266    UP000079169    UP000075903    UP000007819    UP000053105    UP000002320    UP000075883    UP000192247    UP000014760   

PRIDE

H9IYW4    Q9VC31    V5HT64   

Pfam

PF00071   Ras        + More
PF14604   SH3_9

Interpro

IPR005225   Small_GTP-bd_dom        + More
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR001452   SH3_domain       
IPR036028   SH3-like_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF50044   SSF50044       

ProteinModelPortal

H9IYW4   A0A2H1VLR1   A0A194RNP1   A0A212EIN4   A0A194PFE4   W8B6B1   + More
A0A1Q3FYM8   Q16UA3   A0A182RUJ0   A0A067RBQ5   A0A182JM61   A0A182PIQ1   A0A3B0K6K3   Q29C11   B4GPC9   A0A182N9H1   A0A0C9REZ1   A0A182WBC0   A0A182QC03   A0A0K8TZE5   B4KAM8   A0A1I8M2F4   A0A182GPW7   B4M0Q5   B4JRJ1   A0A182Y840   B3LYA3   A0A1I8P7S0   A0A0L0CCL4   W5J5B4   A0A182FGS4   B4QTT3   Q9VC31   B4PV37   B4IJC7   B3P6Y0   A0A182WWB7   Q7QIH8   A0A182I6J6   A0A151X622   A0A1W4W2F5   B4NGQ1   A0A182L3V0   A0A1B0G2Z5   A0A1A9UQW1   A0A1A9ZWR8   F4WB26   A0A195BFH4   A0A195EYI9   A0A158NRD3   A0A1A9XK06   A0A1B0BTE1   A0A026X269   A0A151IAK3   A0A0M4F510   A0A1A9X1N6   A0A0A1XJ83   A0A151J5W6   A0A336LMI0   U5ETR9   E9IQ23   E2ADD1   A0A232FJF4   V9IIZ5   A0A087ZUG2   A0A0T6AVD0   A0A224Z694   K7J551   E2C0R8   A0A154PR04   A0A224Z7E1   A0A131YQX0   A0A131XLN8   A0A1L8DV66   A0A087UP71   D6WAF6   A0A1B6CHY4   A0A147BLA6   A0A1B6LX13   A0A1E1X0K4   A0A3Q0IPT9   A0A1L8DKX7   A0A2S2PG63   A0A182V5X4   A0A2S2QGM3   J9JP61   X1XLI0   A0A2H8TY07   V5HT64   A0A0M9A6N0   B0XGC6   A0A182LYE4   A0A1V9XLA0   R7UFL0   B8Y263  

PDB

5SZI     E-value=4.29847e-55,     Score=539

KEGG

101743798    K07976 Rab family, other | (RefSeq) ras-related protein Rab-8A

GO

GO:0003924   GO:0005525   GO:0045202   GO:0043025   GO:0055037   GO:0031982   GO:0016192   GO:0032482   GO:0009306   GO:0005768   GO:0005886   GO:0072659   GO:0006904   GO:0006886   GO:0017157   GO:0008021   GO:0016021   GO:0007264   GO:0003677   GO:0006310   GO:0031683   GO:0007165   GO:0001664   GO:0016491   GO:0003824  

Length:

204

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.41465

Exp number, first 60 AAs:

0.00142

Total prob of N-in:

0.10067

outside

1  -  204

 

 

Pi

420.391518

Theta

209.752669

Tajima's D

3.735416

CLR

0.464934

CSRT

0.997450127493625

Interpretation

Uncertain