Gene

KWMTBOMO05177

Pre Gene Modal

BGIBMGA012489

Annotation

PREDICTED:_coronin-2B-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr9(-):9833969-9855667      View in EpiBrowser

Full name

Coronin      

Location in the cell

Extracellular   Reliability : 1.779

CDS

ATGCATTGTTCTAGCACAGGAGTAGTGTGGAACTGTGGAGTAGACATGACGAATTCACAGGTATGGTTCCGTGGTGTCAGGAGTTCCAAGTTCCGCCACGTGTACGGCGTGCCGTTTAAAAGGGAGCGTTGCTATGACAACGTAAAGATAACGCGGAATGCGCACGATTCCAATTTCTGCGCGGTCAACCCTAAGTTCGTTGCTATAGTTACCGAGGTTGCCGGCGGTGGCGCTTTTCTTGTGCTACCCCTAGATCACACCGGTCGTTTGGACTTCAACGCGAGCAGAGTTACAGGTCACAAAGGCCCCGTTTTGGACATCAAGTGGAACCCGTTCAACGACAACATAATCGCTTCGTGCTCTGATGATTGCACGGTTAAACTATGGCACATACCGGACGGTGGTCTCTCAATGCACTTGACCGAGTGGCTGGTGGAACTGCACGGTCACAAGAGACGCGTCGCCTACATCGAGTGGCATCCGACGGCCGAGAACATACTGCTCAGCGCTGGATTCGATTCCCTGATAATCGTCTGGGACGTGGGCAAGGGGGAGGCTGTGAAGCTGATCGACTGCCATAGCGACGTGATCTACTGCATGTCGTTCAACAGGGACGGCTCGCTGCTGGCGACCACCTGCAAGGATAAGAAACTGCGGGTCATCGAACCCCGGCGGGGGATCGTGCTCTCTGAAGGTCACTGTCACTTGGGCACGAAGGCGTCGAAGTGCACGTTCCTGGGCAGCCGGGGTCGCGTGGTGACGACCGGCTTCTCGCGGCACAGCGACCGCCAGTACGCAGTGTGGGACCAGCACGACCTCGCCAAGCCGCTCGTCTGCGAGACCATCGACAGCTCCTCGGGGGTCGTCTTCCCGTACTATGACCACGACACTAACATGGTGTACCTGGCCGGCAAGGGCGACGGGAACATCAGATATTACGAAGTAGTCGACGAGCCGCCTTACGTGCACTTCCTCAATCAATTCCTATCTGGGAACCCTCAGCGCGGGCTGGGCTTCATGCCGAAGCGCGGGGTGAACACGAGCGCGTGCGAGGTGTTCCGGTTCTACAAGCTGCACACCTCCAGGGGACTCTGCGAGCCGATCTCGATGATAGTGCCGAGGAAGTCCGACTGCTTCCAGGATGACTTGTACCCCGACACGGCCGCCCCCCTGCCCTCGTTGACTGCGAAGGACTGGTTGAGCGGAATGAACGCACCTCCGCTCCTAATCAGTATGAAAACAGGTAAATTTAGCGGAATCGTCATGAACTTATTAAGATGA

Protein

MHCSSTGVVWNCGVDMTNSQVWFRGVRSSKFRHVYGVPFKRERCYDNVKITRNAHDSNFCAVNPKFVAIVTEVAGGGAFLVLPLDHTGRLDFNASRVTGHKGPVLDIKWNPFNDNIIASCSDDCTVKLWHIPDGGLSMHLTEWLVELHGHKRRVAYIEWHPTAENILLSAGFDSLIIVWDVGKGEAVKLIDCHSDVIYCMSFNRDGSLLATTCKDKKLRVIEPRRGIVLSEGHCHLGTKASKCTFLGSRGRVVTTGFSRHSDRQYAVWDQHDLAKPLVCETIDSSSGVVFPYYDHDTNMVYLAGKGDGNIRYYEVVDEPPYVHFLNQFLSGNPQRGLGFMPKRGVNTSACEVFRFYKLHTSRGLCEPISMIVPRKSDCFQDDLYPDTAAPLPSLTAKDWLSGMNAPPLLISMKTGKFSGIVMNLLR

Similarity

Belongs to the WD repeat coronin family.

Uniprot

H9JSH8   A0A194PDI4   A0A3S2NN17   A0A0L7KVW0   A0A2A3EMU2   A0A154PC19   + More
A0A088ADK7   A0A232FAM4   A0A151I4X2   K7IZY9   A0A158NXT0   A0A026VYD0   A0A3L8DT04   A0A1B6ES35   D7EIA7   A0A1B6L791   A0A1W4X7J6   F4WLT3   A0A2J7PT74   A0A195FWZ9   A0A1W4X7R0   A0A2J7PT66   V5GQJ0   V5GUG1   A0A067QVB2   N6T524   A0A1Y1LHM6   U4U2X8   A0A1Y1LHK3   A0A0L7RH42   A0A0M8ZR10   T1JFZ6   A0A023F3A1   A0A069DVQ5   E2BW29   A0A1Z5KVY0   T1HSS1   A0A0P5T0Y5   A0A0P5WBW8   A0A0P5Q581   A0A0P5HQX6   A0A0N8E2F1   A0A0N8EIA7   A0A0P5X5H1   A0A0P5Y5K6   E9GJC0   A0A2R5LLK3   A0A0P6C9E5   A0A0P4Y850   A0A293ME98   A0A0P5UAF0   A0A0P6CT80   A0A0P5GTI3   A0A0P6GBL4   A0A0P5SFX0   A0A0P5X6C0   A0A0P5LIQ9   A0A0P5QUU8   A0A0P4Z3A2   A0A0N7ZJ07   A0A0P4ZMX4   A0A224XAA7   A0A131XF60   A0A0N7ZZ70   A0A0P5T2T7   A0A0P5MG60   A0A2H1V2D2   A0A0P4Y5B2   A0A0P5DLF7   A0A0P4YRA8   A0A147BUE6   A0A0P5LGA0   A0A0P5QGS1   A0A0A9XVE3   A0A0P5MSD0   A0A0A9XNQ9   A0A131YUX4   A0A0N8BB27   A0A0P5EGU2   A0A0P5H5E0   A0A0A9Z5P6   A0A224YW93   A0A0P5K4A1   A0A0V0GCB5   L7MHT9   A0A1E1X5I0   A0A2H8TIU0   A0A0A9WYQ2   A0A0A9WUV9   A0A0A9Z3I3   A0A0A9Z3H8   A0A0A9WEV6   A0A0A9X1A7   A0A2P8YYH3   A0A0A9WYP5   A0A0A9X2A0   A0A0A9WTY6   A0A0P5P356   A0A0K8T9B7   A0A0K8T8M4  

Pubmed

19121390    26354079    26227816    28648823    20075255    21347285    + More
24508170    30249741    18362917    19820115    21719571    24845553    23537049    28004739    25474469    26334808    20798317    28528879    21292972    28049606    29652888    25401762    26830274    28797301    25576852    28503490    29403074   

EMBL

BABH01027842    BABH01027843    BABH01027844    BABH01027845    KQ459606    KPI91406.1    + More
RSAL01000028    RVE51831.1    JTDY01005097    KOB67373.1    KZ288206    PBC33075.1    KQ434864    KZC08974.1    NNAY01000597    OXU27488.1    KQ976462    KYM84653.1    ADTU01003503    ADTU01003504    ADTU01003505    ADTU01003506    KK107579    EZA48650.1    QOIP01000004    RLU23560.1    GECZ01029038    JAS40731.1    KQ972797    EFA11755.2    GEBQ01020379    JAT19598.1    GL888216    EGI64815.1    NEVH01021919    PNF19526.1    KQ981204    KYN44963.1    PNF19527.1    GALX01004584    JAB63882.1    GALX01004583    JAB63883.1    KK852901    KDR14123.1    APGK01043770    KB741017    ENN75269.1    GEZM01055115    GEZM01055114    GEZM01055113    GEZM01055112    GEZM01055111    GEZM01055110    JAV73133.1    KB631644    ERL84951.1    GEZM01055116    JAV73132.1    KQ414596    KOC70021.1    KQ435944    KOX68216.1    JH432192    GBBI01002822    JAC15890.1    GBGD01001003    JAC87886.1    GL451091    EFN80061.1    GFJQ02007989    JAV98980.1    ACPB03015723    GDIP01139292    JAL64422.1    GDIP01101385    JAM02330.1    GDIQ01128877    JAL22849.1    GDIQ01224504    JAK27221.1    GDIQ01068460    JAN26277.1    GDIQ01024012    JAN70725.1    GDIP01077173    JAM26542.1    GDIQ01184557    GDIP01063843    LRGB01002993    JAK67168.1    JAM39872.1    KZS05188.1    GL732547    EFX80422.1    GGLE01006245    MBY10371.1    GDIP01003822    JAM99893.1    GDIP01240682    JAI82719.1    GFWV01019309    MAA44037.1    GDIP01133138    JAL70576.1    GDIQ01087686    JAN07051.1    GDIQ01242831    JAK08894.1    GDIQ01035758    JAN58979.1    GDIP01140296    JAL63418.1    GDIP01077172    JAM26543.1    GDIQ01179848    JAK71877.1    GDIQ01118783    JAL32943.1    GDIP01223016    JAJ00386.1    GDIP01240681    JAI82720.1    GDIP01210266    JAJ13136.1    GFTR01007171    JAW09255.1    GEFH01004260    JAP64321.1    GDIP01198177    JAJ25225.1    GDIP01131833    JAL71881.1    GDIQ01179847    JAK71878.1    ODYU01000357    SOQ35000.1    GDIP01232282    JAI91119.1    GDIP01157928    JAJ65474.1    GDIP01225719    JAI97682.1    GEGO01000955    JAR94449.1    GDIQ01195244    JAK56481.1    GDIQ01124122    JAL27604.1    GBHO01031066    GBHO01022374    JAG12538.1    JAG21230.1    GDIQ01174700    JAK77025.1    GBHO01044328    GBHO01031059    GBHO01022333    GBHO01003788    GBRD01004069    JAF99275.1    JAG12545.1    JAG21271.1    JAG39816.1    JAG61752.1    GEDV01005553    JAP83004.1    GDIQ01195243    JAK56482.1    GDIQ01270557    JAJ81167.1    GDIQ01254681    JAJ97043.1    GBHO01044325    GBHO01044319    GBHO01032392    GBHO01003785    GBRD01004067    JAF99278.1    JAF99284.1    JAG11212.1    JAG39819.1    JAG61754.1    GFPF01006924    MAA18070.1    GDIQ01195245    JAK56480.1    GECL01000655    JAP05469.1    GACK01002191    JAA62843.1    GFAC01004675    JAT94513.1    GFXV01002155    MBW13960.1    GBHO01044324    GBHO01031058    JAF99279.1    JAG12546.1    GBHO01032393    GBHO01003786    JAG11211.1    JAG39818.1    GBHO01031062    GBHO01003782    JAG12542.1    JAG39822.1    GBHO01031064    GBHO01003787    JAG12540.1    JAG39817.1    GBHO01044327    GBHO01037290    JAF99276.1    JAG06314.1    GBHO01044321    GBHO01031061    JAF99282.1    JAG12543.1    PYGN01000285    PSN49299.1    GBHO01032391    GBHO01031063    JAG11213.1    JAG12541.1    GBHO01032389    GBHO01003781    JAG11215.1    JAG39823.1    GBHO01032390    GBHO01031065    JAG11214.1    JAG12539.1    GDIQ01134468    JAL17258.1    GBRD01004071    JAG61750.1    GBRD01004070    JAG61751.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000037510    UP000242457    UP000076502    + More
UP000005203    UP000215335    UP000078540    UP000002358    UP000005205    UP000053097    UP000279307    UP000007266    UP000192223    UP000007755    UP000235965    UP000078541    UP000027135    UP000019118    UP000030742    UP000053825    UP000053105    UP000008237    UP000015103    UP000076858    UP000000305    UP000245037   

PRIDE

H9JSH8   

Pfam

PF00400   WD40        + More
PF08953   DUF1899
PF00834   Ribul_P_3_epim

Interpro

IPR015505   Coronin        + More
IPR019775   WD40_repeat_CS       
IPR015048   DUF1899       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR011045   N2O_reductase_N       
IPR000056   Ribul_P_3_epim-like       
IPR011060   RibuloseP-bd_barrel       
IPR013785   Aldolase_TIM       

SUPFAM

SSF50978   SSF50978        + More
SSF50974   SSF50974       
SSF51366   SSF51366       

Gene 3D

2.130.10.10     3.20.20.70    

CDD

cd00429  RPE

ProteinModelPortal

H9JSH8   A0A194PDI4   A0A3S2NN17   A0A0L7KVW0   A0A2A3EMU2   A0A154PC19   + More
A0A088ADK7   A0A232FAM4   A0A151I4X2   K7IZY9   A0A158NXT0   A0A026VYD0   A0A3L8DT04   A0A1B6ES35   D7EIA7   A0A1B6L791   A0A1W4X7J6   F4WLT3   A0A2J7PT74   A0A195FWZ9   A0A1W4X7R0   A0A2J7PT66   V5GQJ0   V5GUG1   A0A067QVB2   N6T524   A0A1Y1LHM6   U4U2X8   A0A1Y1LHK3   A0A0L7RH42   A0A0M8ZR10   T1JFZ6   A0A023F3A1   A0A069DVQ5   E2BW29   A0A1Z5KVY0   T1HSS1   A0A0P5T0Y5   A0A0P5WBW8   A0A0P5Q581   A0A0P5HQX6   A0A0N8E2F1   A0A0N8EIA7   A0A0P5X5H1   A0A0P5Y5K6   E9GJC0   A0A2R5LLK3   A0A0P6C9E5   A0A0P4Y850   A0A293ME98   A0A0P5UAF0   A0A0P6CT80   A0A0P5GTI3   A0A0P6GBL4   A0A0P5SFX0   A0A0P5X6C0   A0A0P5LIQ9   A0A0P5QUU8   A0A0P4Z3A2   A0A0N7ZJ07   A0A0P4ZMX4   A0A224XAA7   A0A131XF60   A0A0N7ZZ70   A0A0P5T2T7   A0A0P5MG60   A0A2H1V2D2   A0A0P4Y5B2   A0A0P5DLF7   A0A0P4YRA8   A0A147BUE6   A0A0P5LGA0   A0A0P5QGS1   A0A0A9XVE3   A0A0P5MSD0   A0A0A9XNQ9   A0A131YUX4   A0A0N8BB27   A0A0P5EGU2   A0A0P5H5E0   A0A0A9Z5P6   A0A224YW93   A0A0P5K4A1   A0A0V0GCB5   L7MHT9   A0A1E1X5I0   A0A2H8TIU0   A0A0A9WYQ2   A0A0A9WUV9   A0A0A9Z3I3   A0A0A9Z3H8   A0A0A9WEV6   A0A0A9X1A7   A0A2P8YYH3   A0A0A9WYP5   A0A0A9X2A0   A0A0A9WTY6   A0A0P5P356   A0A0K8T9B7   A0A0K8T8M4  

PDB

2B4E     E-value=1.84901e-135,     Score=1236

KEGG

101740491    K13887 coronin-2 | (RefSeq) coronin-2B-like

GO

GO:0051015   GO:0017053   GO:0016857   GO:0005975   GO:0005515   GO:0016020   GO:0007186   GO:0019001   GO:0031683   GO:0007165   GO:0001664   GO:0005525   GO:0016491   GO:0003824  

PANTHER

PTHR10856  

Length:

426

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.29431

Exp number, first 60 AAs:

0.14353

Total prob of N-in:

0.10620

outside

1  -  426

 

 

Pi

249.160705

Theta

182.994503

Tajima's D

1.164549

CLR

0.441909

CSRT

0.705064746762662

Interpretation

Uncertain