Gene

KWMTBOMO05176

Pre Gene Modal

BGIBMGA012489

Annotation

PREDICTED:_coronin-2B-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr9(-):9830172-9831917      View in EpiBrowser

Full name

Coronin      

Location in the cell

Nuclear   Reliability : 2.688

CDS

ATGTTCCTCTCGCGCGAAACCACACCCGACTACCGCCCTCTCAACGCCTGCCCGAACGCACTCAATCACAACAATGAAAATGAGATACAAGTGAACGAGAAATCGCAAAAGACGAACGCCAATCAGAACACGAAGTTCCATCAGCTTCAACGCATGTTCGGCAAGCAGACGAACGACGCGGAGCCGGTGCCCCTCTACAAGCAGATCAACCAGGGAGACGTCTTCAGCACCGAGCACGAGCTACGCCTGGCCTTCAATCGTCAAGGAGAAGAACTCAGGATCGTAAAGAGGCAGCTTCAGAACAGTCAGCAGAGAGTGCGGGAGCTGGAACAGCACGTCGCCGCTCTGCAAGCCAAGCTGCAGTGA

Protein

MFLSRETTPDYRPLNACPNALNHNNENEIQVNEKSQKTNANQNTKFHQLQRMFGKQTNDAEPVPLYKQINQGDVFSTEHELRLAFNRQGEELRIVKRQLQNSQQRVRELEQHVAALQAKLQ

Similarity

Belongs to the WD repeat coronin family.

Feature

chain  Coronin

Uniprot

H9JSH8   A0A2H1VCY9   A0A3S2NN17   A0A194PDI4   A0A0L7KVW0   A0A194RS87   + More
A0A154PC19   A0A2A3EMU2   A0A088ADK7   A0A0L7RH42   A0A3L8DT04   A0A026VYD0   A0A232FAM4   E1ZVU7   E2BW29   K7IZY9   A0A1E1W3P5   A0A0M8ZR10   E9JD38   A0A2P8YYH3   A0A1B6L791   A0A1B6ES35   A0A195FWZ9   F4WLT3   A0A158NXT0   A0A151I4X2   A0A0J7NLY3   A0A1B6E255   A0A1B6ICR8   Q17LA0   D7EIA7   A0A2S2NN35   B0X5D8   A0A1Q3FIR5   A0A1Q3FIV4   A0A1Q3FIT3   A0A1Q3FIW4   A0A1Q3FIM7   A0A1Q3FIN1   A0A182NHR7   A0A084WNF4   A0A182WJ48   W5JI75   A0A182FF80   A0A2H8TIU0   A0A182VE52   A0A182X3M1   A0A182TZE3   Q5TWZ8   A0A182Q9R9   A0A182ING4   A0A182I3E8   J9JPP8   A0A182PQB3   A0A182M4M3   A0A182R4D7   A0A1S4EYR7   A0A182XYZ9   A0A3Q0J4K4   A0A182KRH1   A0A182K7D6   A0A1W4X7R0   A0A1W4X7J6   A0A1Y1LHM6   N6T524   A0A182S6W8   T1HSS1   A0A2J7PT74   A0A336MVG0   A0A0V0GCB5   A0A067QVB2   A0A069DVQ5   A0A023F3A1   A0A224XAA7   A0A0T6B5F8   A0A2J7PT65   A0A0P4VP43   A0A0K8T9B7   A0A0A9WTY6   A0A0A9XNQ9   A0A0A9Z3I3   U4U2X8   A0A0K8T8M4   A0A0A9Z5P6   A0A0A9WYP5   A0A0A9X2A0   A0A0A9XVE3   A0A0A9Z3H8   A0A0A9WEV6   T1JFZ6   A0A1J1HXI0   A0A0P4W5C1  

Pubmed

19121390    26354079    26227816    30249741    24508170    28648823    + More
20798317    20075255    21282665    29403074    21719571    21347285    17510324    18362917    19820115    24438588    20920257    23761445    12364791    14747013    17210077    25244985    20966253    28004739    23537049    24845553    26334808    25474469    27129103    25401762   

EMBL

BABH01027842    BABH01027843    BABH01027844    BABH01027845    ODYU01001862    SOQ38656.1    + More
RSAL01000028    RVE51831.1    KQ459606    KPI91406.1    JTDY01005097    KOB67373.1    KQ459984    KPJ18931.1    KQ434864    KZC08974.1    KZ288206    PBC33075.1    KQ414596    KOC70021.1    QOIP01000004    RLU23560.1    KK107579    EZA48650.1    NNAY01000597    OXU27488.1    GL434640    EFN74698.1    GL451091    EFN80061.1    GDQN01009470    JAT81584.1    KQ435944    KOX68216.1    GL771866    EFZ09319.1    PYGN01000285    PSN49299.1    GEBQ01020379    JAT19598.1    GECZ01029038    JAS40731.1    KQ981204    KYN44963.1    GL888216    EGI64815.1    ADTU01003503    ADTU01003504    ADTU01003505    ADTU01003506    KQ976462    KYM84653.1    LBMM01003474    KMQ93490.1    GEDC01005283    JAS32015.1    GECU01027764    GECU01022978    JAS79942.1    JAS84728.1    CH477217    EAT47475.1    KQ972797    EFA11755.2    GGMR01005945    MBY18564.1    DS232375    EDS40823.1    GFDL01007619    JAV27426.1    GFDL01007632    JAV27413.1    GFDL01007652    JAV27393.1    GFDL01007622    JAV27423.1    GFDL01007618    JAV27427.1    GFDL01007626    JAV27419.1    ATLV01024597    KE525352    KFB51748.1    ADMH02001422    ETN62600.1    GFXV01002155    MBW13960.1    AAAB01008807    EAL41772.2    AXCN02000376    AXCN02000377    APCN01000207    ABLF02030810    AXCM01003014    GEZM01055115    GEZM01055114    GEZM01055113    GEZM01055112    GEZM01055111    GEZM01055110    JAV73133.1    APGK01043770    KB741017    ENN75269.1    ACPB03015723    NEVH01021919    PNF19526.1    UFQT01003111    SSX34594.1    GECL01000655    JAP05469.1    KK852901    KDR14123.1    GBGD01001003    JAC87886.1    GBBI01002822    JAC15890.1    GFTR01007171    JAW09255.1    LJIG01009685    KRT82585.1    PNF19528.1    GDKW01003680    JAI52915.1    GBRD01004071    JAG61750.1    GBHO01032390    GBHO01031065    JAG11214.1    JAG12539.1    GBHO01044328    GBHO01031059    GBHO01022333    GBHO01003788    GBRD01004069    JAF99275.1    JAG12545.1    JAG21271.1    JAG39816.1    JAG61752.1    GBHO01031062    GBHO01003782    JAG12542.1    JAG39822.1    KB631644    ERL84951.1    GBRD01004070    JAG61751.1    GBHO01044325    GBHO01044319    GBHO01032392    GBHO01003785    GBRD01004067    JAF99278.1    JAF99284.1    JAG11212.1    JAG39819.1    JAG61754.1    GBHO01032391    GBHO01031063    JAG11213.1    JAG12541.1    GBHO01032389    GBHO01003781    JAG11215.1    JAG39823.1    GBHO01031066    GBHO01022374    JAG12538.1    JAG21230.1    GBHO01031064    GBHO01003787    JAG12540.1    JAG39817.1    GBHO01044327    GBHO01037290    JAF99276.1    JAG06314.1    JH432192    CVRI01000035    CRK92733.1    GDRN01071065    JAI63761.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000037510    UP000053240    UP000076502    + More
UP000242457    UP000005203    UP000053825    UP000279307    UP000053097    UP000215335    UP000000311    UP000008237    UP000002358    UP000053105    UP000245037    UP000078541    UP000007755    UP000005205    UP000078540    UP000036403    UP000008820    UP000007266    UP000002320    UP000075884    UP000030765    UP000075920    UP000000673    UP000069272    UP000075903    UP000076407    UP000075902    UP000007062    UP000075886    UP000075880    UP000075840    UP000007819    UP000075885    UP000075883    UP000075900    UP000076408    UP000079169    UP000075882    UP000075881    UP000192223    UP000019118    UP000075901    UP000015103    UP000235965    UP000027135    UP000030742    UP000183832   

PRIDE

H9JSH8   

Pfam

PF00400   WD40        + More
PF08953   DUF1899
PF00834   Ribul_P_3_epim

Interpro

IPR015505   Coronin        + More
IPR019775   WD40_repeat_CS       
IPR015048   DUF1899       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR011045   N2O_reductase_N       
IPR000056   Ribul_P_3_epim-like       
IPR011060   RibuloseP-bd_barrel       
IPR013785   Aldolase_TIM       

SUPFAM

SSF50978   SSF50978        + More
SSF50974   SSF50974       
SSF51366   SSF51366       

Gene 3D

2.130.10.10     3.20.20.70    

CDD

cd00429  RPE

ProteinModelPortal

H9JSH8   A0A2H1VCY9   A0A3S2NN17   A0A194PDI4   A0A0L7KVW0   A0A194RS87   + More
A0A154PC19   A0A2A3EMU2   A0A088ADK7   A0A0L7RH42   A0A3L8DT04   A0A026VYD0   A0A232FAM4   E1ZVU7   E2BW29   K7IZY9   A0A1E1W3P5   A0A0M8ZR10   E9JD38   A0A2P8YYH3   A0A1B6L791   A0A1B6ES35   A0A195FWZ9   F4WLT3   A0A158NXT0   A0A151I4X2   A0A0J7NLY3   A0A1B6E255   A0A1B6ICR8   Q17LA0   D7EIA7   A0A2S2NN35   B0X5D8   A0A1Q3FIR5   A0A1Q3FIV4   A0A1Q3FIT3   A0A1Q3FIW4   A0A1Q3FIM7   A0A1Q3FIN1   A0A182NHR7   A0A084WNF4   A0A182WJ48   W5JI75   A0A182FF80   A0A2H8TIU0   A0A182VE52   A0A182X3M1   A0A182TZE3   Q5TWZ8   A0A182Q9R9   A0A182ING4   A0A182I3E8   J9JPP8   A0A182PQB3   A0A182M4M3   A0A182R4D7   A0A1S4EYR7   A0A182XYZ9   A0A3Q0J4K4   A0A182KRH1   A0A182K7D6   A0A1W4X7R0   A0A1W4X7J6   A0A1Y1LHM6   N6T524   A0A182S6W8   T1HSS1   A0A2J7PT74   A0A336MVG0   A0A0V0GCB5   A0A067QVB2   A0A069DVQ5   A0A023F3A1   A0A224XAA7   A0A0T6B5F8   A0A2J7PT65   A0A0P4VP43   A0A0K8T9B7   A0A0A9WTY6   A0A0A9XNQ9   A0A0A9Z3I3   U4U2X8   A0A0K8T8M4   A0A0A9Z5P6   A0A0A9WYP5   A0A0A9X2A0   A0A0A9XVE3   A0A0A9Z3H8   A0A0A9WEV6   T1JFZ6   A0A1J1HXI0   A0A0P4W5C1  

KEGG

101740491    K13887 coronin-2 | (RefSeq) coronin-2B-like

GO

GO:0017053   GO:0051015   GO:0030036   GO:0016020   GO:0016857   GO:0005975  

PANTHER

PTHR10856  

Length:

121

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13362

outside

1  -  121

 

 

Pi

235.671604

Theta

176.153641

Tajima's D

1.110224

CLR

0.00855

CSRT

0.691465426728664

Interpretation

Uncertain