SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05174
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106708942_[Papilio_machaon]
Location
Bomo_Chr9(-):9792659-9798147      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.842
 

Sequence

CDS
ATGGCTAGTTTTAAAAAGATACTACCCCAGGAGGGTACCTCCCGCTCCGCGGGGGGAGAATCCCTCCGTGCGGCCGACTCGTCGGACGCACGCTGCCCCACGTACTCTGGGGGGGGCAAAAACTGCCTAGACGTCAGGTCCGGGAAGGACGGAGTTCAGACGAAGATGTCCGAGAAGGACCTTGAAGTAAGCTCCTTAAGAGCCAATGTCGTGTCAGACGATGACATGGCCACAGTCGGTTCGGCCCAATCGTCGACCCGCTCGTCGCCGACACGACGACAGCGGAAAAGGGTCCTTAATATAAGCTCAGACGGGTTGAGCAGCAGCTCCGGTTCGGAGGGCCCGTCAGTTGCGAAGCCCAGAGCCGTGACGCCATCAAAGCGTGGAAGGGGACGCCCTCCGACCACGAGGCAGTGCGTTGGCATGGCTGCTGCCAGGAAGGCGTGCCTTAGGGCCCAAAGAGAGGAGAGGGAGTTCACAGAGAGCGCGCGCACCACGCGCCAGAAGAAGAGAGCGGCTGAGGGATCTGTCCCTAAGCCTGATGCCGAGCGTAGGCTCCATCAGAGTGCTGAGGTGGCTCTGACGGTGGCCGCCAAATCTAGTAGCCCGAAGGGCACGTATGTGCGTGCATTGAAGGAGTTGGCGGCCACCGTCAAGGAGGCCACGGAGGACCTTGTGGGCCGCACCGCAACTGAAGAGGCTGAAAGACTGCGTGCGATCAACGCCAAGCAGGAGCAGGAGATCCTACAGCTTCGCAAGGAGCTTGATGAAATTAGGAGGGAGCTGGCTACGGTCTCGCAGGTGCTAGGAAATGCACCAGCTGCAGCCCCGGCCCCAAACACCGAAGAAGAAGAGGAGGAGTTGCGCCTCCAGCGCATTATGCGAGCTGTCGGCACGATGCTCGACGCTCGCTTTGCGGGGCTAGAGGGACGGCTTCTACCGGAGCCGCGAATGCGACCACCGCTAGCGGCGGACAGGCGGAAGAGCCGCGAAAAATCACCGGACCCTCCTATGGTCGTAGACGCTACACTGAATTCGGCACCATTATTGAAACCAGTGCCACCTACAACATCGGCGAAAAAGAGGATACGAGGCCCCAGAAGAAAAGCCACTGCGCAAGTGGCTCCACCTGGAACGCCCACCCTCCTCCCGGCTCCAGCTTCTTTGATCGAGAGCTGGTCAACGGTCACCCGTAGGGGCACTCGGCCGAGGGAGGGAGCAGTGAGGACGGTTCCAGTGGTAGCACCCGCTGAAGCGGGAAAGAAAAACCCGTCCTCTGCAAAGAGGAAAGAGAAGAAGCTGCGTCCTCCGCGCTCTGAAGCTGTTGTGCTCAAGCTGCAGCCGGAGGCTGTAGAAAGAGGACTCACATACCGCAGCGTACTCGCCGAAGCGAGAGCCAAGGTGGACCCCGGGGCACTCGGAATCCCCATCCAGCGCATCCGGTCTGCAGTGACTGGGGCCAAGGTGTTGGTAGTGGAAGGTGCTGATCAGAGCGCCAAGGCTGATCTCCTGGCCCAAAAGCTTCGTGAGGTTCTGTCCGCGGAGGGGGTCATCGTGACCCGGCCAGTGACGACTGCAGCCATCCGCATCAGCGGGCTGGATGACTCCTTGACGCCGGAGGAAGTAGCCGCTGAGCTCGCCCGGATTGGCGAATGCACTCTTGAAGCGGTGAAGATCGGAGAGATCAAGTCTGGCCCAAGTGGGATGGGTCAGGTGTTGGTTCGGTTGCCCGTCGCTGCCGCGACGAAGATCCTCGCCGTACCGAAATTGAGGGTCGGTTGGAGCGTGCTCCGCGCTCATCTGCTAGAGGCTAAGAAGCTACAGTGCTTCCGATGCCATGAGCTAGGGCACGTGAGCGCTCGATGTCCGTCGTCGGTCGACCGCAGCCGTGATTGTTACCGGTGCGGCCAGACCGGCCACGTAGCGTCCGGCTGCTCTCTGGCGCCACACTGTGCTGTATGTGCCTCTGCCGGCAGACCGGCGGATCACGTCTCCGGGAGCAAGGCTTGTGCCAAGTCCCCGAGACCGAGACCTAGAAGAGGAGCTTCCGCTGCGCTTGAGAATGCGCGGAGGCAGCCCGGTGTCCTTCGATTCCTGCAGGGGAATCTCAATCACTCTGCCAGAGCTCAGGACCTTTTGTTCCAGAGCATGGCAGAGGGGTTGACCCATCTTGCGGTGGTCGCCGAGCCGTATCGGGTTCCTTCGAGCCCCGATTGGGCAGCCGATTTGGAGGGCCGAGTGGCTATCATCCGACGTTGTTGTGTAGGTGCTTCGCCCAGGTTCGACGTTGTCGAGAGAGGTTGCGGCTTTGTTGCTGTCCTCTGGGCCGAGGTATTCATATTGGGAGTGTACTTCTCCCCAAACAGGACGCTCGCCGAGTTTGAGGTTTTTCTCAGCGAGCTCAGCCGCGTCGTTGGGAGGTCGCACTCCCAACGGATACTCGTTCTCGGGGACCTCAACGCCAAGTCATTGGCTTGGGGATCCTCGAGGACGTGCCCCAGAGGTAGGGCGGTGGAGGAGTGGCTGGTCGGAAGCGGTCTTCTCGTCCTCAATCGTGGCGCAGAACTCACGTGCGTGCGACGTTTGGGCGGGTCCGTGGTTGACGTTACATTTGCCACGCCCGACGTGGCGAATCGCGTACGCGGTTGGGCCGTGATGGTCGGCGAGGAGACGCTCTCCGACCACCGCTACATTCGTTTCGGTGTCGCAGTGCCTCCGGCGGAGTCTATCCAGGGCTCTTCTTTGCTCTGCGGTGGCGGCGCGGGGGGTCCTCGTTGGGCCCAGAAGCGCCTCAACGTCGAGAGGTTGTGTGAGGCGGCTGTAGTCCAGGCATGGCGTCTTGACTCGCTTGGTGAGCCAGCAGACGTGTGCGAGGGGGTGGAGCATCTGCGCGAGGCGATGTCGCGGGTGTGCGACGCCGCTATGCCTCGCATTAGAGCTCTCGCTCCTAAACGCAGAGTCCACTGGTGGACTGAGGAGATCGCTAGCCAGCGCCGGTTGTGCGACGTCAGTCGTCGCGCATACCAACGGTATCGACGTCGAAGAACGCACCGGGACCCCGATGAGGAGGACCGACTGTACGAGGTGTACAGGATGGCCATAAGGGCCCTGCGCGTGGCTATCGGGGAGGCGAAGGAGGCTGCTTGGAACGACCTACTAGCTTCGCTCGACTGTGATCCGTGGGGGCGGCCCTACAGGCTGGCGCGCAATGTGCTCCGCCCTTGGGCCCCCCCCGCAACCAGCACCCTGCCGCCGGAGACATTGCAGCGGGTAGTCGGGGGTCTGTTTCCGGATTTTACCGGGACGGCCTTCGTCCCCCCTGTGATGACGACGATGCGGGTTGCTGATGGCGGGGAGCCTGCGGACGTTTCGCAGGCGGAGTTTGAATCGGCTGTGCAGAGGATGCGGGCGAAGCGCACGGCTCCCGGTCCCGATGGGATCTCGTCCCGAGCGTGGGCGCTCGCCTTGACGGGCGATGGTTTGGGGCCTGCCCTCCGAAGGCTGTTCAGCCGGTGCCTCCGTGAGGGCAGGTTCCCAGAGCCATGGAGGACTGGTCGGCTCGTCCTTATTCCTAAGGAGGGTCGGCCACGTGACGAACCGAACGGGTACCGCCCAATCGTCGTGCTGGACGAGGCCGGTAAGCTCTTCGAGCGCGTCATCGCTAATCGCCTTGTCCAGCACCTGGAAAACGTTGGGCCTGATTTGGCTCCTAACCAATACGGTTTCCGGAGGGGTCGCTCGACCGTGGACGCGGTCTTGCGTGTCCGCCATCTCTCCGATTGTGCGTGCTCCGAGGGGGGCGTGTTGTTGGCTGTGTCGATTGACATCGCCAACGCCTTCAACACGATCCCCTGGAGCACGATCATGGAATCACTTCGGTTTCACCGCATCCCCAATAGTCTCCGCACCCTGATAGAGGACTACCTCTCAGGGCGGAGCGTGATTTTCCCCGAGAGAAGAGGATGGGGACGAAAAACGGTGTCGTGCGGGGTCCCACAGGGGTCGGTATTGGGACCACTCCTGTGGGACATCGGTTTCGACTGGGTCCTCCGCGGTGCTGGCCTGCGTGGCGTCGACGTGGTGTGCTATGCCGACGACACGTTGGTGACGGCTCGCGGAGCTGACTACAGGACCGCAGCGATCCTTGCAACGGCGGCGGTCTCCACCGTCGTTAGCCGCATTCGGAGACTAGGTCTTGAGGTGGCCCTCCACAAGTCTGAGGCCGTATGCTTTCACCCGGTTCGGAGAGGACCCCCTCCGGGCGCGACGCTCATAGTCGGTGGAGTATCGATCGCTGTCCAGCCGAAGCTCAAATATTTGGGCATCGTGCTGGACAGTCGATGGCGCTTCGACCACCATTTTGGTGAGTTGATTCCGAGGCTACTGGGCATGGCAGGTGCGTTAGTCCGTCTTCTGCCCAACGTTGGTGGTTGCAGCGTCGGTGTCCGACGCCTGTACCTGGGGGTCGTGCGCAGTATGGCCTTGTATGGCGCTCCCGTGTGGTCGCCCACACTCTCCGCACGCAATGCGGCGCTGCTGCTCCGAGCTCAGCGGGCGCTCGCGGTGAGGGTCATCAGGGGGTACCGTACGATCTCCCGAGAGGTCGCCTGCGCCCTCGCTGGTTCCCTTCCTTGGGATCTCGAGGCCGAGGTATTGGCTACGGTATACCGGCGCAGGGCACAGTCCCTGGGTCGGGGACGGACACCCGGCCTGTCGGCTGTCAGTCGGTGGAGGCGTGCTGCGCGTCATCTGGCGTACGCTAAATGGAGGGAGCGGTTGCTGGAGGAACTTCATCAAACCTCAGCCACCCGCCGGCGCACTCTCGAGGCCCTGGTGCCCGTGCTGGAGACATGGTCGGATCGGCGACACGGCGTGCTCTCCTTCCGCCTTACGCAGGTCCTCTCGGGGCATGGCTGCTTCGGGAGGTACCTGTGGAGGGTTTGCAGGAGAGAGCCACATCCGGGTTGTCACCAGTGCGGGCATCCGGATGATGACGCTCAGCACGCACTCGAAGCGTGCCCGCGTTGGGAGCACCCGCGGCGAGATCTCATCGCGGTGCTGGGGAGGGACCTCTCCTTGCGGGCTGTCATTGCCCGCATGCTAGAGGACGAGAGTTCGTGGGAGGCCATGGCCAGATTTTGCGACCTGGTCATGGCGTTCCGCGAGGCTGAGGAGCGCGAAAGGGAGTGGAATCCCTCTTCGGCTCCTCAGCGAAGAAGGCGGGGTGGGCGACGCGGGCACGATGCTCCCGTTAATCTCCCGTAG
Protein
MASFKKILPQEGTSRSAGGESLRAADSSDARCPTYSGGGKNCLDVRSGKDGVQTKMSEKDLEVSSLRANVVSDDDMATVGSAQSSTRSSPTRRQRKRVLNISSDGLSSSSGSEGPSVAKPRAVTPSKRGRGRPPTTRQCVGMAAARKACLRAQREEREFTESARTTRQKKRAAEGSVPKPDAERRLHQSAEVALTVAAKSSSPKGTYVRALKELAATVKEATEDLVGRTATEEAERLRAINAKQEQEILQLRKELDEIRRELATVSQVLGNAPAAAPAPNTEEEEEELRLQRIMRAVGTMLDARFAGLEGRLLPEPRMRPPLAADRRKSREKSPDPPMVVDATLNSAPLLKPVPPTTSAKKRIRGPRRKATAQVAPPGTPTLLPAPASLIESWSTVTRRGTRPREGAVRTVPVVAPAEAGKKNPSSAKRKEKKLRPPRSEAVVLKLQPEAVERGLTYRSVLAEARAKVDPGALGIPIQRIRSAVTGAKVLVVEGADQSAKADLLAQKLREVLSAEGVIVTRPVTTAAIRISGLDDSLTPEEVAAELARIGECTLEAVKIGEIKSGPSGMGQVLVRLPVAAATKILAVPKLRVGWSVLRAHLLEAKKLQCFRCHELGHVSARCPSSVDRSRDCYRCGQTGHVASGCSLAPHCAVCASAGRPADHVSGSKACAKSPRPRPRRGASAALENARRQPGVLRFLQGNLNHSARAQDLLFQSMAEGLTHLAVVAEPYRVPSSPDWAADLEGRVAIIRRCCVGASPRFDVVERGCGFVAVLWAEVFILGVYFSPNRTLAEFEVFLSELSRVVGRSHSQRILVLGDLNAKSLAWGSSRTCPRGRAVEEWLVGSGLLVLNRGAELTCVRRLGGSVVDVTFATPDVANRVRGWAVMVGEETLSDHRYIRFGVAVPPAESIQGSSLLCGGGAGGPRWAQKRLNVERLCEAAVVQAWRLDSLGEPADVCEGVEHLREAMSRVCDAAMPRIRALAPKRRVHWWTEEIASQRRLCDVSRRAYQRYRRRRTHRDPDEEDRLYEVYRMAIRALRVAIGEAKEAAWNDLLASLDCDPWGRPYRLARNVLRPWAPPATSTLPPETLQRVVGGLFPDFTGTAFVPPVMTTMRVADGGEPADVSQAEFESAVQRMRAKRTAPGPDGISSRAWALALTGDGLGPALRRLFSRCLREGRFPEPWRTGRLVLIPKEGRPRDEPNGYRPIVVLDEAGKLFERVIANRLVQHLENVGPDLAPNQYGFRRGRSTVDAVLRVRHLSDCACSEGGVLLAVSIDIANAFNTIPWSTIMESLRFHRIPNSLRTLIEDYLSGRSVIFPERRGWGRKTVSCGVPQGSVLGPLLWDIGFDWVLRGAGLRGVDVVCYADDTLVTARGADYRTAAILATAAVSTVVSRIRRLGLEVALHKSEAVCFHPVRRGPPPGATLIVGGVSIAVQPKLKYLGIVLDSRWRFDHHFGELIPRLLGMAGALVRLLPNVGGCSVGVRRLYLGVVRSMALYGAPVWSPTLSARNAALLLRAQRALAVRVIRGYRTISREVACALAGSLPWDLEAEVLATVYRRRAQSLGRGRTPGLSAVSRWRRAARHLAYAKWRERLLEELHQTSATRRRTLEALVPVLETWSDRRHGVLSFRLTQVLSGHGCFGRYLWRVCRREPHPGCHQCGHPDDDAQHALEACPRWEHPRRDLIAVLGRDLSLRAVIARMLEDESSWEAMARFCDLVMAFREAEEREREWNPSSAPQRRRRGGRRGHDAPVNLP

Summary

Uniprot
A0A0J7KQK3   A0A0J7KFH2   A0A0J7NFZ0   A0A0J7N0R3   A0A0J7KRB8   A0A0J7KIS5   + More
J9KM84   X1WJY4   X1WZ64   A0A139W939   A0A139W940   A0A139W9B3   A0A139WAH4   X1WXT5   A0A139WNC9   A0A139WN93   J9LA43   J9KNS1  
Pubmed
18362917    19820115   
EMBL
LBMM01004272    KMQ92618.1    LBMM01008278    KMQ89009.1    LBMM01005474    KMQ91485.1    + More
LBMM01012412    KMQ86235.1    LBMM01003988    KMQ92922.1    LBMM01006977    KMQ90149.1    ABLF02018942    ABLF02041885    ABLF02011238    ABLF02011183    ABLF02041884    KQ972691    KXZ75807.1    KXZ75806.1    KQ972544    KXZ75869.1    KQ971388    KYB24913.1    ABLF02004854    ABLF02041317    KQ971310    KYB29500.1    KYB29499.1    ABLF02018098    ABLF02018808   
Proteomes
UP000036403    UP000007819    UP000007266   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR000663   Natr_peptide       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
3.60.10.10    
ProteinModelPortal
A0A0J7KQK3   A0A0J7KFH2   A0A0J7NFZ0   A0A0J7N0R3   A0A0J7KRB8   A0A0J7KIS5   + More
J9KM84   X1WJY4   X1WZ64   A0A139W939   A0A139W940   A0A139W9B3   A0A139WAH4   X1WXT5   A0A139WNC9   A0A139WN93   J9LA43   J9KNS1  
PDB
1WDU     E-value=2.4305e-08,     Score=146

Ontologies

KEGG
105842185    no KO assigned | (RefSeq) uncharacterized LOC105842185
GO
GO:0008270   GO:0003676   GO:0003964   GO:0005179   GO:0005576   GO:0007186   GO:0019001   GO:0031683   GO:0007165   GO:0001664   GO:0005525   GO:0016491   GO:0003824  

Topology

Length:
1754
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0769900000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00004
outside
1  -  1754
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
2.012287
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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