Gene

KWMTBOMO05159

Annotation

gag-like_protein_[Bombyx_mori]

Location

Bomo_Chr9(-):9236000-9236917      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.425

CDS

ATGGAGGTCGACCTCGACCCCGCCTTATCGACGGATGGATTCACCCTGGTACAAAAGGGTAAGAAGCGTGCCGCGGAGTCTCGAGCTCCCGCGGCCGCTAAAATTAGCAAAGCCGCGAACGCGTCTCGCCCCCGCCCTCAGACTCCCGTTGCGCCCCGAGCCCGTGCCACTCCGACGCCGCGTCCGGTGGCACGAAATAAAACCCAGACCCCTCCCCCGGTTATGCTTCAAGAGAAGGCAACTTGGGATCGAGTTTGCCTGGCCCTTAAGGCCAAAAATATCAATTTCACGAATGCCCGTAATCTCGCGAACGGCATTCAAATTAAGGTTCAAACACCCGACGACCATAGGGCTCTCTCTTCTTACCTCCGTAAGGAGCGTATAAGTTTCCATACGTATACGCTTCAGGAGGAGCGCGAACTCCGTGCCGTCATACGTGGCATCCCTAAAGATTTGGATGCGGAGCTCGTCAAGGCCGACCTTCTCGAACAAGGTCTACCAGTTAACTCCGTACACCGCATGCACAGAGGCCGCGGAAGGGAGCCATACAACATGGTTCTCGTCGCCCTCCAGCCTACCCCTGAGGGTAAGCAAATATTCAGCATACGAACGGTCTGTAGGCTTTCCGGAATCGCCGTCGAAGCCCCACACAAGAAAGGCACACCTAGTCAGTGCCATAACTGTCAATTATACGGACGTTCTTCCCGTAACTGTCACGCGCGCAATGTTAGCAACACTCCGGTTTGA

Protein

MEVDLDPALSTDGFTLVQKGKKRAAESRAPAAAKISKAANASRPRPQTPVAPRARATPTPRPVARNKTQTPPPVMLQEKATWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRAVIRGIPKDLDAELVKADLLEQGLPVNSVHRMHRGRGREPYNMVLVALQPTPEGKQIFSIRTVCRLSGIAVEAPHKKGTPSQCHNCQLYGRSSRNCHARNVSNTPV

Uniprot

Q9XXV9   Q9BPP9   O96545   J9LAP4   X1WZ68   A0A2S2NZX5   + More
X1WK76   A0A2S2NWV3   K7IN67   A0A139WF70   J9LG99   S4PDX4   A0A2S2R163   A0A2S2R2P1   J9L0P4   A0A087SUI1   A0A2S2QG05   J9LR29   J9LD16   A0A224XT32   A0A3S2NJ07   A0A0J7KKG5   J9LJG0   A0A087UCW3   J9L215   J9KTG1   A0A2S2QWV6   J9L4Y8  

Pubmed

10333566    10380107    20075255    18362917    19820115    23622113    + More

EMBL

AB018558    BAA76303.1    AB055391    BAB21762.1    AF081103    AAC72920.1    + More
ABLF02012432    ABLF02023713    ABLF02050674    ABLF02053474    ABLF02053651    GGMR01010150    MBY22769.1    ABLF02035261    ABLF02035909    ABLF02066026    GGMR01009090    MBY21709.1    KQ971354    KYB26582.1    ABLF02041767    GAIX01003456    JAA89104.1    GGMS01013909    MBY83112.1    GGMS01015000    MBY84203.1    ABLF02042488    KK112005    KFM56520.1    GGMS01007463    MBY76666.1    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02023816    GFTR01005305    JAW11121.1    RSAL01000708    RVE41206.1    LBMM01006314    KMQ90711.1    ABLF02016540    KK119261    KFM75202.1    ABLF02014222    ABLF02052585    ABLF02025092    GGMS01013048    MBY82251.1    ABLF02040267   

Proteomes

UP000007819    UP000002358    UP000007266    UP000054359    UP000283053    UP000036403    + More

PRIDE

Q9XXV9    Q9BPP9   

Pfam

PF07530   PRE_C2HC        + More
PF03372   Exo_endo_phos
PF13359   DDE_Tnp_4
PF14529   Exo_endo_phos_2
PF00078   RVT_1
PF07727   RVT_2

Interpro

IPR006579   Pre_C2HC_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR027806   HARBI1_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR037448   Zig-8       
IPR000477   RT_dom       
IPR035979   RBD_domain_sf       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219        + More
SSF48726   SSF48726       
SSF54928   SSF54928       

Gene 3D

3.60.10.10     2.60.40.10    

ProteinModelPortal

Q9XXV9   Q9BPP9   O96545   J9LAP4   X1WZ68   A0A2S2NZX5   + More
X1WK76   A0A2S2NWV3   K7IN67   A0A139WF70   J9LG99   S4PDX4   A0A2S2R163   A0A2S2R2P1   J9L0P4   A0A087SUI1   A0A2S2QG05   J9LR29   J9LD16   A0A224XT32   A0A3S2NJ07   A0A0J7KKG5   J9LJG0   A0A087UCW3   J9L215   J9KTG1   A0A2S2QWV6   J9L4Y8  

KEGG

105841788    no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003676   GO:0003964  

PANTHER

PTHR23279  

Length:

248

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01011

outside

1  -  248

 

 

Pi

22.6603

Theta

42.837536

Tajima's D

-1.461644

CLR

11.343505

CSRT

0.0673466326683666

Interpretation

Uncertain