Gene

KWMTBOMO05144

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(+):8946648-8949426      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.808

CDS

ATGACACAATCATATTATGAATTGATAGAAAATTGTGTATTAGACAATTGTATTTTAAAAGCTTTAAACAAGCACAACGTAAACAGCCTAGCCGACGCCGCTCCGCCAATCCTCCCTTACGGCCCGGATTCGAATCTATCCCCCGAGGACACCGTCGAATCCATAAACATCATTACCGATCACATCTCTTCCGCGATCATTAGATCTTCAAAAGAAGTCGATGTGGAGGACAGCTTCCACCGCATCAGACTGTCCCCCGATCTTAGGAATCTCTTAAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGTCTTCCCACGCATGCAAACCGGATTCAGATGCGTCGTCTACAACGCGAAGTCCACTCCCGCTTAAGCGACGCGCGTAACGATAATTGGCATAGTTATTTAGAACAACTCGCGCCCTCCCACCAAGCATACTGGCGACTAGCTAGGACTCTCAAATCCGAAACTACCGCTACTATGCCTCCCCTCTTACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACGGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCAGGCTCCGACGGCATCCACAACCGCGCGCTAAAATTTTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGAGAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCTCGACGATAGGAAAAATTTACGAACGTCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAGTTCTCATAGACGAACAGTTCGGATTCCGCTCAAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGATACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGAATAGACATCAACCCCACGAAAAGCGCAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCGCCGTTAGTCCCATCACTCTCTTTGGCCAGCCCATACCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATAAAAACGGTACGCGACCGCGCCGCGGTTATTCTAGGACGACTCTATCCAATGCTTTGTAGTCGAAGCAAACTGTCCCTCCGCAATAAGGTAACTCTCTACAAAACTTGTATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACTCAGCCCGCACCCACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCATGGTTCCTTAGGAATGTGGATCTCCACGATGACCTGGAGCTCGACTCTCTTAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTTTTAGGCACCACAAGCATCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAACTAA

Protein

MTQSYYELIENCVLDNCILKALNKHNVNSLADAAPPILPYGPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHANRIQMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTATMPPLLRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPRNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKVLIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPDTHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAVILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSLSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPPDPLTVLLGTTSIGHRPRRTRRLRRRARRAN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNF3   V5GNJ2   A0A2S2PR14   J9KKL3   Q07995   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   A0A2S2PPK8   A0A224XF24   X1WLB2   A0A2S2QEE0   J9KC83   A0A2M4BEF4   A0A2M4BEZ9   A0A2H8U0H5   A0A0L0CBP5   A0A2M4BDA5   J9M522   A0A2M4BD62   A0A2M4BD66   A0A2S2Q383   A0A2S2Q352   J9LC21   A0A2J7R8R8   V9GZF1   A0A2J7PDM0   A0A2M4CV52   J9KCZ4   A0A023EW17   K7IN67   A0A2M4BD67   A0A2M4CV42   A0A1Y1LKN6   A0A2M4BDV6   A0A2S2NGV8   X1WZH0   A0A2J7R7D0   A0A0C9RJA4   A0A224X6Q4   A0A2S2N814   A0A1Y1KFR3   X1WN18   X1WNI2   A0A1Y1KUU7   Q8T9X4  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
8387152    30086797    25474469    26108605    1327974    24945155    20075255   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    S59870    AAB26437.2    RPOV01000134    RPJ78669.1    GBBI01004395    JAC14317.1    GBBI01004571    JAC14141.1    GGMR01018716    MBY31335.1    GFTR01008038    JAW08388.1    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    ABLF02033757    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GFXV01007093    MBW18898.1    JRES01000644    KNC29657.1    GGFJ01001842    MBW50983.1    ABLF02024246    GGFJ01001843    MBW50984.1    GGFJ01001844    MBW50985.1    GGMS01002992    MBY72195.1    GGMS01002955    MBY72158.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01006721    PNF37225.1    M95171    AAA29354.1    NEVH01026386    PNF14434.1    GGFL01004957    MBW69135.1    ABLF02008463    GAPW01000276    JAC13322.1    GGFJ01001858    MBW50999.1    GGFL01005012    MBW69190.1    GEZM01053022    JAV74219.1    GGFJ01001857    MBW50998.1    GGMR01003407    MBY16026.1    ABLF02034467    NEVH01006736    PNF36716.1    GBYB01008290    JAG78057.1    GFTR01008279    JAW08147.1    GGMR01000676    MBY13295.1    GEZM01084969    JAV60363.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02008153    ABLF02008462    ABLF02008464    GEZM01074951    JAV64378.1    AF456125    AAL57609.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000037069    UP000235965    UP000002358    + More

PRIDE

Q9XXW0    Q93137    Q9BPQ0    Q8T9X4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNF3   V5GNJ2   A0A2S2PR14   J9KKL3   Q07995   A0A3N5Z7I3   A0A023EYS8   A0A023EZE6   A0A2S2PPK8   A0A224XF24   X1WLB2   A0A2S2QEE0   J9KC83   A0A2M4BEF4   A0A2M4BEZ9   A0A2H8U0H5   A0A0L0CBP5   A0A2M4BDA5   J9M522   A0A2M4BD62   A0A2M4BD66   A0A2S2Q383   A0A2S2Q352   J9LC21   A0A2J7R8R8   V9GZF1   A0A2J7PDM0   A0A2M4CV52   J9KCZ4   A0A023EW17   K7IN67   A0A2M4BD67   A0A2M4CV42   A0A1Y1LKN6   A0A2M4BDV6   A0A2S2NGV8   X1WZH0   A0A2J7R7D0   A0A0C9RJA4   A0A224X6Q4   A0A2S2N814   A0A1Y1KFR3   X1WN18   X1WNI2   A0A1Y1KUU7   Q8T9X4  

PDB

6AR3     E-value=0.00283354,     Score=99

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519  

Length:

740

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.22635

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02994

outside

1  -  740

 

 

Pi

20.762893

Theta

19.481964

Tajima's D

0.075096

CLR

23.107608

CSRT

0.4034798260087

Interpretation

Uncertain