SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05139  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012470
Annotation
PREDICTED:_cell_division_cycle_and_apoptosis_regulator_protein_1-like_isoform_X1_[Papilio_machaon]
Location
Bomo_Chr9(+):8799613-8808844      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.964
 

Sequence

CDS
ATGACGGGAATAAACCCTCAAATAATGGATCCCAACGCCATGATGACACAACAAAGCATGATGCCCTTTCAACAGACTCAAGCAATGTTTAATCCTATGCAAGCCCAAGGTGGTATGGCAATGCAAATGACAGGACAAATGCCTATGAATCAAATGGCTCAAGGTCAAATGTTTCCCGGTAATGTTGTGGCATATCCAACGCCGCGTGCATTAAACCCCGGTATCTATCAAAATGCACAAAATAACCAATCATCAACAACTGAACAACGTGTATTCACTGGCACAATAACTAAAACTCACAATGATTTCGGTTTTGTGGATCATGATGTGTTTTACCAAACCTCAGTCCTGCCTAAAGCGGGAGCTTGTCAAAAACCTCCGCCTACCAAAAGTAACTCTTATAATGCAGTACCACCACCATCAGTCGCAAGGAAAGCGCCTCCATCAAGACGTGATGAGCGTCCCACAAGAAGAGATGACAGAAAAAGATCCAGAACAAGAAGCAGAACTAGGTCTAGAGATAGACGTGACAGCCGTGCTCGTAGAGATTCACCTCCTCCTAAACGATCAGTTGTAAGACAACCATCACCAATTAAGTATTCTGTGAGAGTTCCCCGCATACCATTAGATATACAAAAAGTTGATGTCCCTGCATTGTCTCAAAGATACACAAACTTATATATACCATCTGATTTCTTTTCTGCCTGTGTGAGGTGGGGAGAGACATTTCCTCCTTCTACACCACTGTCTCTCAACAACTCTTGTAGCTACCATATTATGAGTAAAGAAATCGAGAATCCAAATAAAAATGACACAGTATTGGAACCTCCTGATGCAGATTATAGATTTTCAGCTAAGGTAATGCTAATGAGTATGCCGACGTTAGAGGCATTGTACCAAAAGTGTGGACTTACAAAATTAGAGAAAGAAGAAAAAGATAAGCGCCCAAACAATAAGACTGCACTGCATCCTACACGCCTTATAAAATTCTTAGTGGGACAAAAAGGGAAAGGTGGCGAAAATTTTGCAATTGGGGGACCATGGAGTCCTTCATTAGATGGTGAAAATCCCCAAACAGACCCAAAAGTATTGGTTAAAACAGCGATACGAACATGTAAAGCATTAACAGGCATCGATTTATCTTCTTGTACACAGTGGTACCGAATGGTGGAGTTTTACTACTGGCGCGAGGGCAGCGGCAACAAGTCGCGGCTCGAGTGTGTGGTGTTGTTCCTGCCAGACGTGTGGTCCGCACAGCCTTCGCGTATCGAGTGGAGCAGCGTTCAGGACCAGTATAAGGCGGCGTGCGATGCGGCCATCAGGAAACTTGACGGCGCCAGCTCGACTGTAGACAAGAAGCAGCCGTCTGCGGCGACTGCTGCGGGGGCGGAAACTGCGGCCGATGCAGAAAATTGCGAAATTGAAGCAACAAACGTTGATGATGGTACAATAACAATAGACGAAAACGATGAGGATATCAAACTTGATCTTGAAGCAATGAACGCAGAACAATTGCGAGAAGAATTAAAAAAATGTGATTACAAATCTAAGGGATTACGATCTCAAATAATTTCACGTTTGTCGGAACTTTCAAAAACCGACAAAGAAGATGGAGGGGACGTCATGGATCTAGAAGATGATGAGAATTTAGAAAACAATAGTCATGAAGACAACACAATTCAGTCACAAAATGAGGAAGAAGAGAATAAAGGGGACAACATAGAAGATGAAAAACCGAATGACGAAAAACAGAATGAACCACAAGCTAATTCTAAAAAAGACGAGGGAGAACAAAAAGAAATAAAGAAGACAGATAAGGAAGTAGAAGAAGAAAAGAAAAAAATTGAAAAAGAAAAACAAAACCTTAAGTCCCGTTATGAAATACCAAATTCACCACACATTTTGGTGCATCCGTCAGCCACCGCTAAAGCCGGTAAATTCTGCTGCAATGTTGCAACCCTGTCGTGGATGCTAGACTACAGGGTTACCGACAACAAGGAACACAGCTTCGAGCTATTTGTATTCGCGGAGCTTTTCAACGAAATGTTAATGAGGGATTTCGGTTTTTATATTTATAAAACCTTATATACACTACCAGAAAAAACTGAGGAAATCAGTGATAAAAGTTCTGATAAAGCCGAGAAGAAGGACGAAAAGAAAACCGAGGAAAAAAAAGATGAAAAAAAGGATGATAAAGATAGAAAAGAAGACAGGCGTGATGAGAAACGTGAATCGCGTGACGACAAACGAGATTCTCGGAAACGAGAAGTAAAAGATTCTCACAGCGATGATGAGGGTACTGGCTCCCCGAACCGACGCAGTCGCGGTGTTGAGTTACCTCCAGATCCGTATCTACTTCTGTCACTTGTGTATTTTGATACAGCTCGAGGTGGAACAATGACCAAAAAAGACCTACAAAATTTATTCATGAGCCTCGGTTTGCGCTTATCTCGATCACAAATACGCTCCATATTAGAAAAAGTTTGCATCAAAGAACTGTTCAATTACAAGTATTTAATAGGAGCTATCAAAGATCTGTCTTCAGGCTCATCAGAGGTAATACAAGATCTGCCTCTAGAAACAACAGTGAGTTCTGATGATGTACCATCACATATCACAGAGTTGGAAGAAACTATTGCAGCTGGTAACCGTCTCTTGCTGCCTGTTTTCAAAGATTCTAATGAAGTAGATGAAGAAGATGGCTCTAAGAAGACGATCGATATTTCTGACTCTGGTATCGTGAGCTACAAGAACCGCGTAGTGGACGTGGGTGCACTGGTGAGCAGCACGTCCCGCTGGGCGGCGGAGCGCGCGGCGCTGGAGCGAGCGCTGGAGTCGACCCGCAGCGCGCTGGCGGCGGCCCGGCGCGCCGCACTCAGCACGCAGCAAGCACAGCGCGGCGCACAGGACCAGCTCTCCGACCTCACCGCCAGCCTCGCCGCCGCACGGGCCCGTGTCACCACACTCACAGCCAGTTCAAAAATATTTCATTCAACATTGAAGAGCATACAGTCTAAAGTGGAAGCGGTAATTAATATCAAGTATGAAGATGATGACGTCATCGAAATTGTCAATGGTCCTTCAAAGGATCAAAGAAACCAAAAAGAGAAGACAGAAAAAGCAAAAGAAACTATAGAAGAACAGACAGAAAACCGAAATGATGAAGAGACTTGTATTAATATTGACAATATCGCCACAGATGAATCACAACAGAAACATGCTGAAGTAAAAGAAGATATTGCTTCCAGTGATAATATGGAAATTGATGACAAAGAATAA
Protein
MTGINPQIMDPNAMMTQQSMMPFQQTQAMFNPMQAQGGMAMQMTGQMPMNQMAQGQMFPGNVVAYPTPRALNPGIYQNAQNNQSSTTEQRVFTGTITKTHNDFGFVDHDVFYQTSVLPKAGACQKPPPTKSNSYNAVPPPSVARKAPPSRRDERPTRRDDRKRSRTRSRTRSRDRRDSRARRDSPPPKRSVVRQPSPIKYSVRVPRIPLDIQKVDVPALSQRYTNLYIPSDFFSACVRWGETFPPSTPLSLNNSCSYHIMSKEIENPNKNDTVLEPPDADYRFSAKVMLMSMPTLEALYQKCGLTKLEKEEKDKRPNNKTALHPTRLIKFLVGQKGKGGENFAIGGPWSPSLDGENPQTDPKVLVKTAIRTCKALTGIDLSSCTQWYRMVEFYYWREGSGNKSRLECVVLFLPDVWSAQPSRIEWSSVQDQYKAACDAAIRKLDGASSTVDKKQPSAATAAGAETAADAENCEIEATNVDDGTITIDENDEDIKLDLEAMNAEQLREELKKCDYKSKGLRSQIISRLSELSKTDKEDGGDVMDLEDDENLENNSHEDNTIQSQNEEEENKGDNIEDEKPNDEKQNEPQANSKKDEGEQKEIKKTDKEVEEEKKKIEKEKQNLKSRYEIPNSPHILVHPSATAKAGKFCCNVATLSWMLDYRVTDNKEHSFELFVFAELFNEMLMRDFGFYIYKTLYTLPEKTEEISDKSSDKAEKKDEKKTEEKKDEKKDDKDRKEDRRDEKRESRDDKRDSRKREVKDSHSDDEGTGSPNRRSRGVELPPDPYLLLSLVYFDTARGGTMTKKDLQNLFMSLGLRLSRSQIRSILEKVCIKELFNYKYLIGAIKDLSSGSSEVIQDLPLETTVSSDDVPSHITELEETIAAGNRLLLPVFKDSNEVDEEDGSKKTIDISDSGIVSYKNRVVDVGALVSSTSRWAAERAALERALESTRSALAAARRAALSTQQAQRGAQDQLSDLTASLAAARARVTTLTASSKIFHSTLKSIQSKVEAVINIKYEDDDVIEIVNGPSKDQRNQKEKTEKAKETIEEQTENRNDEETCINIDNIATDESQQKHAEVKEDIASSDNMEIDDKE

Summary

Uniprot
H9JSF9   A0A3S2NIJ8   A0A212FG93  
Pubmed
19121390    22118469   
EMBL
BABH01027935    RSAL01000027    RVE51928.1    AGBW02008702    OWR52752.1   
Proteomes
UP000005204    UP000283053    UP000007151   
PRIDE
H9JSF9   
Pfam
PF14444   S1-like        + More
PF14443   DBC1
PF02037   SAP
Interpro
IPR025224   CCAR1/CCAR2        + More
IPR025223   S1-like_RNA-bd_dom       
IPR025954   DBC1/CARP1_inactive_NUDIX_dom       
IPR003034   SAP_dom       
IPR036361   SAP_dom_sf       
IPR018247   EF_Hand_1_Ca_BS       
SUPFAM
SSF68906   SSF68906       
Gene 3D
1.10.720.30    
ProteinModelPortal
H9JSF9   A0A3S2NIJ8   A0A212FG93  

Ontologies

KEGG
101743389    no KO assigned | (RefSeq) cell division cycle and apoptosis regulator protein 1-like
GO
GO:0006355   GO:0051301  
PANTHER
PTHR14304  

Topology

Length:
1092
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00544
Exp number, first 60 AAs:
0.00526
Total prob of N-in:
0.00028
outside
1  -  1092
 
 

Population Genetic Test Statistics

Pi
231.702943
Theta
193.134385
Tajima's D
0.5313
CLR
0.295762
CSRT
0.524573771311434
Interpretation
Uncertain
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