Silkworm Genome Informatics Database

Gene

KWMTBOMO05130

Pre Gene Modal

BGIBMGA012464

Annotation

PREDICTED:_uncharacterized_protein_LOC106134691_[Amyelois_transitella]

Location

Bomo_Chr9(+):8597413-8626796 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.884

CDS

ATGAGTATTGTCAGGGCTCAGCCAAGACGTTCCGAAAAGAACCAGGTAAATCCAGGACGGAAGGCATCTTTGAGCGGTATCCGCGAAGGCGATGTCATTTCGTCCATAAACGGGCGGTCTACCAGGAGCATGAGTAATGCTGAAGCTCACGCCATGCTGCGAACAGCTGGTCCAGTCCTAAGACTTGGCCTAAACGAAGACAGAGAGATATCGCCGCGACGGAGATCTATCGGCAAAGGAACGGATTTAAAACGACCATCGCAGTTGATTGCTGAAGTACAATGTGGAAGAGCGACGCCTCAAGCACCAGTTTATGCAACGATAAGATCATCTGAATCACCGATTAAGCGTCCGTCTCCATCAGGCATTCGTTCTTCATTAAGTTCCTTGCCTGGCGAATTTCATTCGACACCCCTTGCGAAATCGCCAACAAATTCCGATAATACTATTGGATTTCACCCGACAAATCCATTTTATACTACTCTCCCTTCAAATTATTTGAGTACTTCCAGATTACCTGTGCCGAACGGTAAAGCTAATACTTTAAATTTAGATAGAGATAAACCTAAACAGTCGTCGCCATTCTATGATTGTGGTGGAGATATAAAATCTACCACGAATCATGAGCGACTACTACAATCTAGTTCCAGCAGTCTTCCATATTATAATCACAATAATGTGAAAAAGTTCAACGGTTACGAAAGTCCAACATCAAAATTTGCAAACAAAACGGACTTTGGTCATTTTGCTAATAGCTATAAAGAATTTAATGAGCAAACAGACCAAAGTCTACCGGATGAGTCTAAAAATCCATTTGCAACAAAAAGAAACAGCGATCCCTTTGAAAAGTATTTACGTCCAGAACATAATAGTAATGGAAAAACTGATGCCAACATTAAAACGATACCGATTTCGATGAGCGATAACAATTTTCAAACTAAAGAAGAAATAACACAACGTTCAACTGTAACTGAACATAAGATAAATGAAATCGAAGAAATTAAGACAATCAAGAAGATAGTTTTGAACGAATACGATAGAATGCGGGATACCAGAGAAGACGATTATTCTAAAATTATTCGCGATAGAAATAATCATTCTGATAAATCTTCAAGAGTAAGACGCAATGAAGATTTTCGTCAAGAATCACCAAGTAAAGAACGTCCTATATTACCAAGGAATGGATGTCATAATCCACAAAATGAAGAGAATAATAAAAGGAGCTGGAGTTCCTTATCTAGTACGTACGATCAGTACAAATCCGAGCATGAAAACCTCACGAGCACTTCAGTCGAATTTCCGTCGGGCGAGGTGGTGACCATCAAACCACCCGTGAAATCCCCGAGCACACACACGCCTGCAAACGTCCCCAGCCCCACAACGAAACGTGAGTAA

Protein

MSIVRAQPRRSEKNQVNPGRKASLSGIREGDVISSINGRSTRSMSNAEAHAMLRTAGPVLRLGLNEDREISPRRRSIGKGTDLKRPSQLIAEVQCGRATPQAPVYATIRSSESPIKRPSPSGIRSSLSSLPGEFHSTPLAKSPTNSDNTIGFHPTNPFYTTLPSNYLSTSRLPVPNGKANTLNLDRDKPKQSSPFYDCGGDIKSTTNHERLLQSSSSSLPYYNHNNVKKFNGYESPTSKFANKTDFGHFANSYKEFNEQTDQSLPDESKNPFATKRNSDPFEKYLRPEHNSNGKTDANIKTIPISMSDNNFQTKEEITQRSTVTEHKINEIEEIKTIKKIVLNEYDRMRDTREDDYSKIIRDRNNHSDKSSRVRRNEDFRQESPSKERPILPRNGCHNPQNEENNKRSWSSLSSTYDQYKSEHENLTSTSVEFPSGEVVTIKPPVKSPSTHTPANVPSPTTKRE

Uniprot

H9JSF3 A0A2H1W3H0 A0A2W1BS35 A0A194PF96 A0A194RNI5

Pubmed

19121390 28756777 26354079

EMBL

BABH01027950 BABH01027951 ODYU01005949 SOQ47372.1 KZ149974 PZC75987.1 + More
KQ459606 KPI91369.1 KQ459984 KPJ18890.1

Proteomes

UP000005204 UP000053268 UP000053240

PRIDE

H9JSF3

Pfam

PF00595 PDZ

Interpro

IPR001478 PDZ + More
IPR036034 PDZ_sf

SUPFAM

SSF50156 SSF50156

ProteinModelPortal

H9JSF3 A0A2H1W3H0 A0A2W1BS35 A0A194PF96 A0A194RNI5

PDB

2Q3G E-value=0.00776869, Score=93

KEGG

NA

GO

GO:0005515 GO:0007264 GO:0008265 GO:0030151 GO:0030170 GO:0007166 GO:0016616 GO:0046168 GO:0016491 GO:0003824

Length:

464

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.01386

outside

1 - 464

Pi

225.41054

Theta

19.03754

Tajima's D

0.883895

CLR

0.278954

CSRT

0.640817959102045

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics