Gene

KWMTBOMO05115  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012503

Annotation

PREDICTED:_poly(rC)-binding_protein_3_isoform_X3_[Papilio_polytes]

Location

Bomo_Chr9(-):8271165-8290663      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.092 Nuclear   Reliability : 1.633

CDS

ATGGACCTGGAGAAAGCCCCTTCTCTCCATGAGGAAGACTCAAAAGTTATCCTCACTATCAGACTGATTATGCAGGGGAAGGAAGTTGGGAGCATTATTGGAAAAAAAGGAGAGATTGTTAAAAGATTTAGAGAAGAGTCCGGTGCTAAAATTAATATTTCTGATGGATCATGCCCGGAGCGTATTGTTACTGTCACAGGAAACACAACTGCTATATTCAAGGCATTCACACTCATATGCAAAAAATTTGAAGAGTGGTGCACTCAGTTCAATGAGGGCGGAGGCGGCGGATCGCGTGCTCCCATCACGCTGCGGCTTATTGTGCCCGCCTCGCAGTGTGGCTCACTTATTGGAAAGGGGGGCTCAAAAATCAAGGAAATCCGTGATGTCACTGGTGCCAACATTCAGGTGGCGAGCGAAATGTTGCCGAATTCAACTGAACGAGCGGTGACAATCAGTGGAACCTGTGACGCTATAACCCAATGCATTTATCATATTTGTTGTGTTATGTTAGAGAGCCCTCCGAAGGGAGCAACAATCCCGTACAGACCAAAGCCAAATGTAGCGGGACCTGTGATTCTAGCCGGCGGACAAGCCTACACTATCCAAGGAAACTATGCCGTCCCAGCCCAAGACATGGGAGGGCTCGCTAAGTCGCCGTTGGCCAGTCTCGCTGCCCTGGGCCTCGGTGGTCTCGGACCTGGGAATGCTGCAGGATTAAATCCTGCTGCACTGGCGGCTCTGGCCGGCTCGCAGCTGCGCACTACGAACCAGTCCCGCAACCAGCCCGCCACCAACCAGCAGTCGCACGAGATGACCGTGCCCAATGAGCTCATCGGGTGCATCATCGGAAAGGGCGGCACCAAGATCGCTGAAATCCGTCAAATATCCGGCGCAATGATCAGGATATCCAACTGCGAGGAGCGCGAGGGCGGCAGCACCGACCGGACCATCACTATAACTGGCAACCCCGACTCGGTGGCGTTGGCGCAGTACCTCATCAACATGAGGATCACGATGGAGACGGCCGGCCTCCCGCTGCCCGGCTACCACTACATCGCTCCGAATCACATAGTGAAAGCGCCGATACATTGA

Protein

MDLEKAPSLHEEDSKVILTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGNTTAIFKAFTLICKKFEEWCTQFNEGGGGGSRAPITLRLIVPASQCGSLIGKGGSKIKEIRDVTGANIQVASEMLPNSTERAVTISGTCDAITQCIYHICCVMLESPPKGATIPYRPKPNVAGPVILAGGQAYTIQGNYAVPAQDMGGLAKSPLASLAALGLGGLGPGNAAGLNPAALAALAGSQLRTTNQSRNQPATNQQSHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGSTDRTITITGNPDSVALAQYLINMRITMETAGLPLPGYHYIAPNHIVKAPIH

Uniprot

A0A3S2M6Y9   A0A1Y1L8J0   V5GMR9   S4P396   A0A2J7QDK8   A0A1Y1LEN0   + More
A0A0C9S1H0   A0A0C9QZE8   T1E2R2   A0A1W4XG91   T1E2R8   K7IYD3   A0A2M4AQ93   A0A2M4CTT4   A0A1L8DGU8   A0A2A3E5V3   T1PMM0   A0A1B6LFG9   A0A0A1XHH2   A0A0A1WFP7   A0A0K8TVT8   A0A034W8N0   A0A1I8NW24   Q5TRZ9   A0A084WCZ9   A0A336MH90   B4N4G9   B4LC01   B4L003   A0A2M4AQB1   B4J0R1   A0A336MBM9   A0A1W4VAV9   A0A0J9URC1   B4PI46   B3NJ10   Q95SZ9   A0A3B0JRT1   A0A1W4UYL4   A0A0J9RZT7   M9PIK1   A0A0R1E3W1   A0A0Q5UK39   A0A1Y1L8V2   A0A310SSG3   D6WBV2   A0A2A3E5Y9   V5G5P0   A0A0T6BF49   A0A1I8NW47   A0A2J7QDL3   A0A0A1XLI1   A0A034W8M5   A0A1J1I786   E2BX15   A0A088ATQ8   A0A2J7QDL4   A0A0Q9X2D2   A0A0Q9WIZ9   A0A0Q9XQU7   A0A1Y1LAY0   A0A1W4VBB5   A0A0J9S140   A0A0R1DZI6   A0A0Q5UHQ7   A4V2A4   U5ESU4   A0A0C9R4I1   A0A146M848   A0A1Q3EU26   A0A1B6KVV4   A0A023F506   A0A069DUG0   A0A0P4VKU7   T1HGV2   A0A224XJW6   A0A0V0G963   A0A2M4CL72   A0A182FLA4   A0A0K8W3L8   A0A1I8MHP4   A0A1L8DH25   A0A1I8NW21   A0A1Q3FTK0   A0A034W5Y2   A0A034W8P1   E9G1N5   A0A3B0J860   A0A162T5T0   A0A336MFK0   A0A1W4VC80   A0A0J9S150   A0A1W4VAV4   A0A3B0JUK4   A0A0Q5U684   Q0E8A7   A0A0R1DZH1   A0A1W4UYZ8  

Pubmed

28004739    23622113    24330624    20075255    25315136    25830018    + More
25348373    12364791    14747013    17210077    24438588    17994087    22936249    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18362917    19820115    20798317    26823975    25474469    26334808    27129103    21292972   

EMBL

RSAL01000018    RVE52888.1    GEZM01062144    GEZM01062140    JAV70013.1    GALX01003072    + More
JAB65394.1    GAIX01006534    JAA86026.1    NEVH01015820    PNF26668.1    GEZM01062142    GEZM01062141    GEZM01062139    JAV70016.1    GBYB01014621    JAG84388.1    GBYB01009169    GBYB01014623    JAG78936.1    JAG84390.1    GALA01001065    JAA93787.1    GALA01001050    JAA93802.1    GGFK01009630    MBW42951.1    GGFL01004555    MBW68733.1    GFDF01008401    JAV05683.1    KZ288357    PBC27117.1    KA649345    AFP63974.1    GEBQ01017549    JAT22428.1    GBXI01003885    JAD10407.1    GBXI01016570    JAC97721.1    GDHF01033933    JAI18381.1    GAKP01008836    GAKP01008832    GAKP01008824    JAC50128.1    AAAB01008948    EAL40201.3    ATLV01022904    ATLV01022905    KE525337    KFB48093.1    UFQS01000865    UFQT01000865    SSX07355.1    SSX27697.1    CH964095    EDW79043.2    CH940647    EDW69801.2    CH933809    EDW19038.1    GGFK01009632    MBW42953.1    CH916366    EDV97916.1    SSX07353.1    SSX27695.1    CM002912    KMZ01131.1    CM000159    EDW95494.1    CH954178    EDV52727.1    AY060403    AE014296    AAL25442.1    AAS65095.1    OUUW01000002    SPP76409.1    KMZ01129.1    AGB94891.1    KRK02465.1    KQS44406.1    GEZM01062143    GEZM01062138    JAV70014.1    KQ760559    OAD59806.1    KQ971314    EEZ97865.2    PBC27118.1    GALX01003071    JAB65395.1    LJIG01000976    KRT85964.1    PNF26671.1    GBXI01002859    JAD11433.1    GAKP01008829    GAKP01008826    JAC50123.1    CVRI01000043    CRK96035.1    GL451202    EFN79734.1    PNF26667.1    KRF98994.1    KRF84584.1    KRG06472.1    GEZM01062137    JAV70021.1    KMZ01120.1    KRK02464.1    KQS44403.1    AAN12194.2    AGB94890.1    GANO01003071    JAB56800.1    GBYB01011204    JAG80971.1    GDHC01002685    JAQ15944.1    GFDL01016231    JAV18814.1    GEBQ01024391    JAT15586.1    GBBI01002603    JAC16109.1    GBGD01001458    JAC87431.1    GDKW01001621    JAI54974.1    ACPB03025788    GFTR01006308    JAW10118.1    GECL01001582    JAP04542.1    GGFL01001934    MBW66112.1    GDHF01006556    JAI45758.1    GFDF01008331    JAV05753.1    GFDL01004121    JAV30924.1    GAKP01008828    JAC50124.1    GAKP01008830    GAKP01008814    JAC50138.1    GL732529    EFX86525.1    SPP76413.1    LRGB01000007    KZS21933.1    SSX07357.1    SSX27699.1    KMZ01130.1    SPP76411.1    KQS44411.1    ABI31266.1    KRK02459.1   

Proteomes

UP000283053    UP000235965    UP000192223    UP000002358    UP000242457    UP000095301    + More
UP000095300    UP000007062    UP000030765    UP000007798    UP000008792    UP000009192    UP000001070    UP000192221    UP000002282    UP000008711    UP000000803    UP000268350    UP000007266    UP000183832    UP000008237    UP000005203    UP000015103    UP000069272    UP000000305    UP000076858   

PRIDE

Q95SZ9    A4V2A4    Q0E8A7   

Pfam

PF00013   KH_1

Interpro

IPR004087   KH_dom        + More
IPR004088   KH_dom_type_1       
IPR036612   KH_dom_type_1_sf       

SUPFAM

SSF54791   SSF54791       

Gene 3D

3.30.1370.10    

ProteinModelPortal

A0A3S2M6Y9   A0A1Y1L8J0   V5GMR9   S4P396   A0A2J7QDK8   A0A1Y1LEN0   + More
A0A0C9S1H0   A0A0C9QZE8   T1E2R2   A0A1W4XG91   T1E2R8   K7IYD3   A0A2M4AQ93   A0A2M4CTT4   A0A1L8DGU8   A0A2A3E5V3   T1PMM0   A0A1B6LFG9   A0A0A1XHH2   A0A0A1WFP7   A0A0K8TVT8   A0A034W8N0   A0A1I8NW24   Q5TRZ9   A0A084WCZ9   A0A336MH90   B4N4G9   B4LC01   B4L003   A0A2M4AQB1   B4J0R1   A0A336MBM9   A0A1W4VAV9   A0A0J9URC1   B4PI46   B3NJ10   Q95SZ9   A0A3B0JRT1   A0A1W4UYL4   A0A0J9RZT7   M9PIK1   A0A0R1E3W1   A0A0Q5UK39   A0A1Y1L8V2   A0A310SSG3   D6WBV2   A0A2A3E5Y9   V5G5P0   A0A0T6BF49   A0A1I8NW47   A0A2J7QDL3   A0A0A1XLI1   A0A034W8M5   A0A1J1I786   E2BX15   A0A088ATQ8   A0A2J7QDL4   A0A0Q9X2D2   A0A0Q9WIZ9   A0A0Q9XQU7   A0A1Y1LAY0   A0A1W4VBB5   A0A0J9S140   A0A0R1DZI6   A0A0Q5UHQ7   A4V2A4   U5ESU4   A0A0C9R4I1   A0A146M848   A0A1Q3EU26   A0A1B6KVV4   A0A023F506   A0A069DUG0   A0A0P4VKU7   T1HGV2   A0A224XJW6   A0A0V0G963   A0A2M4CL72   A0A182FLA4   A0A0K8W3L8   A0A1I8MHP4   A0A1L8DH25   A0A1I8NW21   A0A1Q3FTK0   A0A034W5Y2   A0A034W8P1   E9G1N5   A0A3B0J860   A0A162T5T0   A0A336MFK0   A0A1W4VC80   A0A0J9S150   A0A1W4VAV4   A0A3B0JUK4   A0A0Q5U684   Q0E8A7   A0A0R1DZH1   A0A1W4UYZ8  

PDB

2JZX     E-value=3.55117e-44,     Score=448

KEGG

101744309    K21444 poly(rC)-binding protein 3/4 | (RefSeq) poly(rC)-binding protein 3

GO

GO:0003723   GO:0003676   GO:0016020   GO:0006811   GO:0016021   GO:0007166   GO:0016616   GO:0046168   GO:0016491   GO:0003824  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18313

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.00493

outside

1  -  364

 

 

Pi

241.077351

Theta

176.284668

Tajima's D

1.249709

CLR

0.035881

CSRT

0.725663716814159

Interpretation

Uncertain