Gene

KWMTBOMO05114

Annotation

PREDICTED:_glutamate-gated_chloride_channel_isoform_X17_[Papilio_xuthus]

Location

Bomo_Chr9(-):8204246-8257073      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.283

CDS

ATGGGTTGGTCATGCGTCGTGGCACGCGCCGTGGCCTTTATCCTCATGCTCGGCAAAATATCAGCTTTTACGTCCGACATCTTTGCCGCGGGAAAGTCGGACAAAGAGATTTTGGACAATCTTCTTAAAAATACCCGCTACGACAAAAGACTGCTCCCACCAGTTGATGATCCAGAATTCTGTTGTGGTCTAACTTCACCCAACGACTCTTTGGCACAAAATAGGGTCGGGTTTTCGTCGCTTCGGCCCCGTTCGCACAATCGCGGTGTTCTCACAGTAAATGTTAGCGTGCTTCTCCTTAGCTTAGCATCTCCAGATGAATCTAGTCTTAAATACGAAGTGGAGTTTTTACTTCAACAACAATGGTACGACCCTCGGTTAAGATACTCCAACCAATCGCATTACGATTATTTAAATGCCATACATCATCATGAAGATATTTGGCTGCCTGATACATATTTCATCATGCATGGAGATTTTAAGGATCCCATAATACCGATGCATTTTGCGTTACGTATTTATCGCAATGGTACAATTAATTATTTGATGAGGCGACATCTCATACTGTCCTGTCAGGGTCGGCTTAATATATTTCCATTCGATGACCCATTGTGTTCATTTGCCTTAGAAAGTATCTCGTATGAACAATCTGCCATAACATACGTCTGGAAGAATGATGAAGATACACTTAGAAAATCACCATCACTGACGACACTGAACGCCTACCTCATTCAGAACCAGACTATACCCTGTCCAATAAAAGCTAGTTGGAGAGGTAACTACAGCTGTCTAAAGGTTGACTTAATCTTTACTAGAGACCGAGCGTTCTACTTTACTACAGTATTTATTCCTGGAATAATTCTGGTGACATCTTCGTTCATCACATTTTGGCTGGAATGGAACGCGGTGCCAGCCCGTTCCATGATAGGTGTAACAACAATGTTGAACTTTTTTACAACATCTAACGGGTTCCGATCAACTTTGCCAGTAGTATCGAACCTAACAGCCATGAATGTTTGGGACGGTGTATGCATGTGTTTCATTTACGCTTCGCTACTTGAGTTCGTGTGCGTGAACTACGTCGGGAGGAAGAGACCACTACACAATGTGGTATACAGACCAGGGGAGAATCCTGTGACACAGCGACTGCCCGCAGTCCTGAGCAGAATTGGCATTATACTGGCCAGCCCCTTGGAGGCGATGGCATTTCTTCAATGGGTCAAATCTGAGACCCCTCAACCTGCGTGTAGCGGCGAAGGTGATAAGAAGCGAGAATCAACAGGAGCAGCAGATTTGGTGTCGTGTACTGCGTGTACCGGCCCCCCCGGCTCCTGTACGCACACCGCCAATAATGGCGGTGTATCCGAGCCATGTTTCGTCCAGGTTCGCAAAAAAGAACCCCCGCATCCGATCCGAGTGGCGAAGACTATTGACGTAATCGCCAGGATTACGTTTCCAACTGCGTACGCTGTCTTTCTCATCTTCTTCTTCATTCACTACAAAGCGTTTTCTTAA

Protein

MGWSCVVARAVAFILMLGKISAFTSDIFAAGKSDKEILDNLLKNTRYDKRLLPPVDDPEFCCGLTSPNDSLAQNRVGFSSLRPRSHNRGVLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNQSHYDYLNAIHHHEDIWLPDTYFIMHGDFKDPIIPMHFALRIYRNGTINYLMRRHLILSCQGRLNIFPFDDPLCSFALESISYEQSAITYVWKNDEDTLRKSPSLTTLNAYLIQNQTIPCPIKASWRGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRIGIILASPLEAMAFLQWVKSETPQPACSGEGDKKRESTGAADLVSCTACTGPPGSCTHTANNGGVSEPCFVQVRKKEPPHPIRVAKTIDVIARITFPTAYAVFLIFFFIHYKAFS

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

A0A1Y1CBU9   A0A1Y1CBW9   A0A194PEA8   A0A1Y1CCN0   A0A1Y1CCI3   A0A1Y1CBZ2   + More
A0A1Y1CBV1   A0A1Y1CBS9   A0A1Y1CBY9   A0A1Y1CC00   A0A1Y1CBU2   A0A1Y1CBX8   A0A1Y1CCP0   A0A1Y1CBZ5   A0A1Y1CBW7   A0A1Y1CEU1   A0A1Y1CBW1   A0A1Y1CBY5   A0A1Y1CBV9   A0A2A4J638   A0A1Y1CEV2   A0A1Y1CBT8   A0A1Y1CBV2   A0A1Y1CBV3   A0A1Y1CC06   A0A1Y1CBU6   A0A1Y1CCH5   A0A1Y1CBW2   A0A1Y1CC11   A0A1Y1CBY4   A0A1Y1CBW0   A0A1Y1CBT6   A0A336LYA0   A0A1Y1CBV7   A0A1S4GPQ0   Q7Q6Y7   A0A1Y1CEW2   A0A336M5E5   A0A1S4GPR9   A0A1S4GQD2   A0A1S4GQH6   A7UTS4   A0A336LTH9   A0A1W4VAJ8   A0A2A4J4R8   A0A0R1DZ29   A0A0P8XUJ1   A0A0Q9WL63   A0A0J9RVX2   Q2PDY9   A0A0Q5U8V3   A0A0P8ZUZ0   A0A0J9RX89   A0A0R3P3J7   M9PCN0   A0A0J9RVV6   A0A0Q9WUB4   A0A0P8YHI4   A0A0Q5UH41   A0A0J9RVW2   A0A1S4GPQ4   Q5D6W1   A0A0R1DYK3   A0A1I8NFQ3   A0A1I8NFR6   A0A1I8NFP9   A0A1I8NFS0   A0A1Y1N3S0   A0A1W4WUS7   X2JCG3   A0A1W4VNA9   A0A0R1DYI1   M9PFD4   A0A0R1DYH9   A0A0J9RW86   Q2PDZ0   A0A0J9RX61   A0A023F372   Q0GQQ8   A0A0N8P0Y2   A0A0Q9WKP9   A0A0Q5UJG1   M9NFY2   A0A0J9RX66   A0A0R1E3B3   A0A0Q5U541   A0A0J9RW88   A0A0R3P7H5   M9PFD7   A0A0Q9WKQ1   X2JGQ0   A0A0Q5UJE3   A0A0P9AKL0   A0A0J9RW83   A0A0P9AKK1   A0A0Q5U5A6   A0A0J9RVV2   M9NEB0   A0A0J9RVU6   M9PFR7  

Pubmed

26354079    12364791    17994087    17550304    22936249    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    15713676    25315136    28004739    25474469    16902773   

EMBL

LC259042    BAX77806.1    LC259063    BAX77827.1    KQ459606    KPI91363.1    + More
LC259036    BAX77800.1    LC259047    BAX77811.1    LC259069    BAX77833.1    LC259041    BAX77805.1    LC259032    BAX77796.1    LC259034    BAX77798.1    LC259044    BAX77808.1    LC259031    BAX77795.1    LC259070    BAX77834.1    LC259046    BAX77810.1    LC259048    BAX77812.1    LC259049    BAX77813.1    LC259035    BAX77799.1    LC259051    BAX77815.1    LC259038    BAX77802.1    LC259052    BAX77816.1    NWSH01002991    PCG67138.1    LC259045    BAX77809.1    LC259030    BAX77794.1    LC259029    BAX77793.1    LC259040    BAX77804.1    LC259054    BAX77818.1    LC259043    BAX77807.1    LC259037    BAX77801.1    LC259039    BAX77803.1    LC259068    BAX77832.1    LC259073    BAX77837.1    LC259050    BAX77814.1    LC259033    BAX77797.1    UFQT01000185    SSX21247.1    LC259053    BAX77817.1    AAAB01008960    EAA11458.3    LC259055    BAX77819.1    SSX21248.1    EDO63697.1    SSX21250.1    PCG67137.1    CM000159    KRK02143.1    CH902618    KPU78394.1    CH940647    KRF85250.1    CM002912    KMY99858.1    AE014296    ABC66136.2    CH954178    KQS44132.1    KPU78399.1    KMY99869.1    CH379069    KRT07771.1    AGB94587.1    KMY99843.1    KRF85249.1    KPU78406.1    KQS44147.1    KMY99848.1    AY880248    AAX11175.1    KRK02139.1    GEZM01013533    GEZM01013532    JAV92504.1    AHN58101.1    KRK02124.1    AGB94588.1    KRK02128.1    KMY99852.1    ABC66135.2    KMY99844.1    GBBI01003101    JAC15611.1    DQ667191    ABG75743.1    KPU78396.1    KRF85251.1    KQS44150.1    AFH04453.1    KMY99849.1    KRK02130.1    KQS44152.1    KMY99857.1    KRT07775.1    AGB94593.1    KRF85256.1    AHN58100.1    KQS44134.1    KPU78402.1    KMY99847.1    KPU78393.1    KQS44133.1    KMY99846.1    AFH04452.1    KMY99841.1    AGB94589.1   

Proteomes

UP000053268    UP000218220    UP000007062    UP000192221    UP000002282    UP000007801    + More
UP000008792    UP000000803    UP000008711    UP000001819    UP000095301    UP000192223   

PRIDE

Q2PDY9    Q5D6W1    Q2PDZ0   

Pfam

PF02932   Neur_chan_memb        + More
PF02931   Neur_chan_LBD

Interpro

IPR036734   Neur_chan_lig-bd_sf        + More
IPR006029   Neurotrans-gated_channel_TM       
IPR006028   GABAA/Glycine_rcpt       
IPR006202   Neur_chan_lig-bd       
IPR036719   Neuro-gated_channel_TM_sf       
IPR006201   Neur_channel       

SUPFAM

SSF90112   SSF90112        + More
SSF63712   SSF63712       

Gene 3D

2.70.170.10    

ProteinModelPortal

A0A1Y1CBU9   A0A1Y1CBW9   A0A194PEA8   A0A1Y1CCN0   A0A1Y1CCI3   A0A1Y1CBZ2   + More
A0A1Y1CBV1   A0A1Y1CBS9   A0A1Y1CBY9   A0A1Y1CC00   A0A1Y1CBU2   A0A1Y1CBX8   A0A1Y1CCP0   A0A1Y1CBZ5   A0A1Y1CBW7   A0A1Y1CEU1   A0A1Y1CBW1   A0A1Y1CBY5   A0A1Y1CBV9   A0A2A4J638   A0A1Y1CEV2   A0A1Y1CBT8   A0A1Y1CBV2   A0A1Y1CBV3   A0A1Y1CC06   A0A1Y1CBU6   A0A1Y1CCH5   A0A1Y1CBW2   A0A1Y1CC11   A0A1Y1CBY4   A0A1Y1CBW0   A0A1Y1CBT6   A0A336LYA0   A0A1Y1CBV7   A0A1S4GPQ0   Q7Q6Y7   A0A1Y1CEW2   A0A336M5E5   A0A1S4GPR9   A0A1S4GQD2   A0A1S4GQH6   A7UTS4   A0A336LTH9   A0A1W4VAJ8   A0A2A4J4R8   A0A0R1DZ29   A0A0P8XUJ1   A0A0Q9WL63   A0A0J9RVX2   Q2PDY9   A0A0Q5U8V3   A0A0P8ZUZ0   A0A0J9RX89   A0A0R3P3J7   M9PCN0   A0A0J9RVV6   A0A0Q9WUB4   A0A0P8YHI4   A0A0Q5UH41   A0A0J9RVW2   A0A1S4GPQ4   Q5D6W1   A0A0R1DYK3   A0A1I8NFQ3   A0A1I8NFR6   A0A1I8NFP9   A0A1I8NFS0   A0A1Y1N3S0   A0A1W4WUS7   X2JCG3   A0A1W4VNA9   A0A0R1DYI1   M9PFD4   A0A0R1DYH9   A0A0J9RW86   Q2PDZ0   A0A0J9RX61   A0A023F372   Q0GQQ8   A0A0N8P0Y2   A0A0Q9WKP9   A0A0Q5UJG1   M9NFY2   A0A0J9RX66   A0A0R1E3B3   A0A0Q5U541   A0A0J9RW88   A0A0R3P7H5   M9PFD7   A0A0Q9WKQ1   X2JGQ0   A0A0Q5UJE3   A0A0P9AKL0   A0A0J9RW83   A0A0P9AKK1   A0A0Q5U5A6   A0A0J9RVV2   M9NEB0   A0A0J9RVU6   M9PFR7  

PDB

4TNW     E-value=2.79495e-39,     Score=408

KEGG

101737337    no KO assigned | (RefSeq) glutamate-gated chloride channel

GO

GO:0005886   GO:0016021   GO:0004888   GO:0005230   GO:0061797   GO:1902476   GO:0006810   GO:0016020   GO:0006811   GO:0007166   GO:0016616   GO:0046168   GO:0016491   GO:0003824   GO:0005216   GO:0034220  

PANTHER

PTHR18945  

SignalP

Position:   1 - 22,         Likelihood:  0.964209

 

 

Length:

504

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

87.5421400000001

Exp number, first 60 AAs:

12.29756

Total prob of N-in:

0.51900

POSSIBLE N-term signal

sequence

inside

1  -  274

TMhelix

275  -  297

outside

298  -  338

TMhelix

339  -  361

inside

362  -  478

TMhelix

479  -  498

outside

499  -  504

 

 

Pi

212.300855

Theta

185.117791

Tajima's D

0.245866

CLR

0.372528

CSRT

0.442777861106945

Interpretation

Uncertain