Gene

KWMTBOMO05110  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012459

Annotation

TBP-associated_factor_13_isoform_2_[Bombyx_mori]

Location

Bomo_Chr9(+):8131214-8134178      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.631

CDS

ATGGCCACTCCCACTCCTGATTCGCAAGATAACTTTGACCAGTTTGATGAAGAAGAAGAGCAACAGTTAGGTGGAACTACATCTGGTCGTAAAAGACTTTTTAGTAAGGAATTGAGATGTATGATGTATGGATTTGGTGATGATCAAAACCCGTATACTGAAAGTGTCGATTTTTTAGAAGACTTAGTTATTGAATTTATAACAGAAACAACACATAGGGCAATGGAAGTTGGTAGAACAGGAAGAGTCCAAGTAGAAGACATAATTTTCTTAGTTCGTAAAGATGCACGAAAGTATGCACGTGTTAAAGACCTTCTTACAATGAATGAGGAACTTAAGAAAGCTAGAAAAGCTTTTGATGAAGTAAAATATGTTGAGGACCAACAGTAA

Protein

MATPTPDSQDNFDQFDEEEEQQLGGTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDQQ

Uniprot

Q1HQ71   H9JSE8   Q1HQ72   S4NLJ7   A0A2A4IVC1   A0A2A4ITT2   + More
A0A1E1W7Y8   A0A3S2NBV3   A0A2H1VUF6   A0A1E1WLG1   A0A2A4IUL8   A0A0L7KQ66   I4DS46   A0A0K8TPR7   A0A194PDM5   A0A194RPY7   A0A212ESD1   A0A067QVU2   A0A232F8B8   K7IR23   R4V1D4   A0A2P8XB90   A0A0C9QW43   B0W7M4   A0A1B0C904   A0A1B0AH71   A0A0C9RI76   U5ENY6   Q17JG3   A0A023EEG2   A0A0K8UXD3   A0A182RC81   A0A182Y020   A0A1B0DM14   A0A1B0G2F6   A0A1A9UD09   A0A182MBD1   A0A182STT5   A0A151WPH5   A0A034UZ26   T1E8S3   A0A2M4AX09   A0A2M4C319   F4X177   A0A158NFQ2   A0A1B6DKU2   A0A084VND8   W8BZX5   A0A195BDM0   A0A151JY37   A0A195CW55   E2C4H7   A0A1L8DHA1   A0A0P4XBQ4   A0A1L8EDN2   A0A2M4C3R6   A0A1L8DH42   A0A1I8M6K8   A0A1I8QB52   A0A0P5TCC7   A0A0L7RFX2   A0A1L8EBM8   A0A0J7L4M6   E9GLB8   A0A1W4VXW9   E2AU31   W5JK90   A0A2A3E4N3   A0A087ZX98   A0A1Y1N4V2   E0W312   A0A182TSS8   Q7Q3U1   A0A1A9WHG0   A0A0L0C4W3   A0A164XUE7   Q29KL1   B4GT64   A0A1A9YRT3   A0A182GSK9   A0A0P4X1R9   A0A3B0JV47   B4JQ95   A0A3L8E3T7   B4KEV9   B3MKW0   A0A0P5WUM4   A0A1B0AKN3   A0A1B0C698   A0A026WDJ0   A0A0M4EDP2   B4NS08   Q9VIP1   B3NL01   B4PBI0   B4M9M3   B4I636   B4N7S0   A0A0T6BHD0   A0A087UXG5  

Pubmed

19121390    23622113    26227816    22651552    26369729    26354079    + More
22118469    24845553    28648823    20075255    29403074    17510324    24945155    25244985    25348373    21719571    21347285    24438588    24495485    20798317    25315136    21292972    20920257    23761445    28004739    20566863    12364791    14747013    17210077    26108605    15632085    17994087    26483478    30249741    24508170    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304   

EMBL

DQ443181    ABF51270.1    BABH01027984    DQ443180    ABF51269.1    GAIX01014666    + More
JAA77894.1    NWSH01007107    PCG63090.1    PCG63089.1    GDQN01008728    GDQN01007990    JAT82326.1    JAT83064.1    RSAL01000257    RVE43411.1    ODYU01004478    SOQ44386.1    GDQN01003239    JAT87815.1    PCG63088.1    JTDY01007558    KOB65114.1    AK405418    BAM20736.1    GDAI01001713    JAI15890.1    KQ459606    KPI91357.1    KQ459896    KPJ19469.1    AGBW02012813    OWR44406.1    KK852898    KDR14167.1    NNAY01000669    OXU27084.1    KC571943    AGM32442.1    PYGN01004758    PYGN01000725    PSN29271.1    PSN41633.1    GBYB01007959    JAG77726.1    DS231854    EDS38059.1    AJWK01001675    GBYB01007960    JAG77727.1    GANO01000393    JAB59478.1    CH477232    EAT46877.1    GAPW01005841    GAPW01005840    JAC07757.1    GDHF01021284    JAI31030.1    AJVK01006816    CCAG010014651    AXCM01001558    KQ982893    KYQ49595.1    GAKP01023419    JAC35539.1    GAMD01002508    JAA99082.1    GGFK01011989    MBW45310.1    GGFJ01010553    MBW59694.1    GL888528    EGI59749.1    ADTU01014508    GEDC01011023    JAS26275.1    ATLV01014737    KE524984    KFB39482.1    GAMC01007656    GAMC01007654    JAB98901.1    KQ976514    KYM82280.1    KQ981494    KYN40933.1    KQ977279    KYN04389.1    GL452471    EFN77161.1    GFDF01008319    JAV05765.1    GDIP01246519    JAI76882.1    GFDG01001969    JAV16830.1    GGFJ01010829    MBW59970.1    GFDF01008318    JAV05766.1    GDIP01129461    JAL74253.1    KQ414605    KOC69636.1    GFDG01002774    JAV16025.1    LBMM01000784    KMQ97508.1    GL732551    EFX79482.1    GL442767    EFN63074.1    ADMH02000877    ETN64792.1    KZ288376    PBC26665.1    GEZM01015027    JAV91920.1    DS235881    EEB20018.1    AAAB01008964    EAA12355.3    JRES01000914    KNC27281.1    LRGB01000944    KZS14579.1    CH379061    EAL33163.1    CH479189    EDW25573.1    JXUM01017001    KQ560472    KXJ82233.1    GDIP01248200    JAI75201.1    OUUW01000010    SPP85977.1    CH916372    EDV99075.1    QOIP01000001    RLU27361.1    CH933807    EDW11928.1    CH902620    EDV31641.1    GDIP01081470    JAM22245.1    JXJN01026397    JXJN01026508    KK107260    EZA54150.1    CP012523    ALC39997.1    CH981752    CM002910    EDX15386.1    KMY91131.1    AE014134    AY071439    KX531312    AAF53875.1    AAL49061.1    ANY27122.1    CH954179    EDV54579.1    CM000158    EDW90494.2    CH940654    EDW57899.1    CH480822    EDW55842.1    CH964214    EDW80409.1    LJIG01000253    KRT86687.1    KK122154    KFM82054.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000053268    UP000053240    + More
UP000007151    UP000027135    UP000215335    UP000002358    UP000245037    UP000002320    UP000092461    UP000092445    UP000008820    UP000075900    UP000076408    UP000092462    UP000092444    UP000078200    UP000075883    UP000075901    UP000075809    UP000007755    UP000005205    UP000030765    UP000078540    UP000078541    UP000078542    UP000008237    UP000095301    UP000095300    UP000053825    UP000036403    UP000000305    UP000192221    UP000000311    UP000000673    UP000242457    UP000005203    UP000009046    UP000075902    UP000007062    UP000091820    UP000037069    UP000076858    UP000001819    UP000008744    UP000092443    UP000069940    UP000249989    UP000268350    UP000001070    UP000279307    UP000009192    UP000007801    UP000092460    UP000053097    UP000092553    UP000000304    UP000000803    UP000008711    UP000002282    UP000008792    UP000001292    UP000007798    UP000054359   

PRIDE

Q1HQ71    H9JSE8    Q1HQ72    Q9VIP1   

Pfam

PF02269   TFIID-18kDa

Interpro

IPR009072   Histone-fold        + More
IPR003195   TFIID_TAF13       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

CDD

cd07978  TAF13

ProteinModelPortal

Q1HQ71   H9JSE8   Q1HQ72   S4NLJ7   A0A2A4IVC1   A0A2A4ITT2   + More
A0A1E1W7Y8   A0A3S2NBV3   A0A2H1VUF6   A0A1E1WLG1   A0A2A4IUL8   A0A0L7KQ66   I4DS46   A0A0K8TPR7   A0A194PDM5   A0A194RPY7   A0A212ESD1   A0A067QVU2   A0A232F8B8   K7IR23   R4V1D4   A0A2P8XB90   A0A0C9QW43   B0W7M4   A0A1B0C904   A0A1B0AH71   A0A0C9RI76   U5ENY6   Q17JG3   A0A023EEG2   A0A0K8UXD3   A0A182RC81   A0A182Y020   A0A1B0DM14   A0A1B0G2F6   A0A1A9UD09   A0A182MBD1   A0A182STT5   A0A151WPH5   A0A034UZ26   T1E8S3   A0A2M4AX09   A0A2M4C319   F4X177   A0A158NFQ2   A0A1B6DKU2   A0A084VND8   W8BZX5   A0A195BDM0   A0A151JY37   A0A195CW55   E2C4H7   A0A1L8DHA1   A0A0P4XBQ4   A0A1L8EDN2   A0A2M4C3R6   A0A1L8DH42   A0A1I8M6K8   A0A1I8QB52   A0A0P5TCC7   A0A0L7RFX2   A0A1L8EBM8   A0A0J7L4M6   E9GLB8   A0A1W4VXW9   E2AU31   W5JK90   A0A2A3E4N3   A0A087ZX98   A0A1Y1N4V2   E0W312   A0A182TSS8   Q7Q3U1   A0A1A9WHG0   A0A0L0C4W3   A0A164XUE7   Q29KL1   B4GT64   A0A1A9YRT3   A0A182GSK9   A0A0P4X1R9   A0A3B0JV47   B4JQ95   A0A3L8E3T7   B4KEV9   B3MKW0   A0A0P5WUM4   A0A1B0AKN3   A0A1B0C698   A0A026WDJ0   A0A0M4EDP2   B4NS08   Q9VIP1   B3NL01   B4PBI0   B4M9M3   B4I636   B4N7S0   A0A0T6BHD0   A0A087UXG5  

PDB

6MZL     E-value=9.62032e-40,     Score=404

KEGG

733104    K03127 transcription initiation factor TFIID subunit 13 | (RefSeq) Taf13; TBP-associated factor 13

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0046982   GO:0003743   GO:0006366   GO:0003677   GO:0003712   GO:0006357   GO:0005669   GO:0006367   GO:0008484   GO:0016020   GO:0004888   GO:0007166   GO:0016616   GO:0046168   GO:0016491   GO:0003824  

PANTHER

PTHR11380  

Length:

129

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.19114

outside

1  -  129

 

 

Pi

210.435274

Theta

186.243256

Tajima's D

0.671088

CLR

0.289526

CSRT

0.564621768911554

Interpretation

Uncertain