Gene

KWMTBOMO05109  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012508

Annotation

RNA_binding_motif_protein_X-linked_2_[Bombyx_mori]

Location

Bomo_Chr9(-):8127315-8129833      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.326

CDS

ATGAATCCAATGACAAATGTGAAGAATGTTTTAAAGCTTAGTGAACATGAATTAGGAAGCAGCTCAAAAACTTCTTGGCATGATCAATATAAGGACAGTGCATGGATATTTGTTGGTGGACTTCCATATGATTTGACTGAAGGAGATGTTATATGTGTATTTTCTCAGTATGGTGAAATTGTAAATATAAACATGGTAAGAGATAAAACAACTGGGAAACCAAAAGGATTTGCATTTTTGTGCTATGAGGATCAGAGATCAACAATTTTAGCAGTTGACAATCTGAATAGTATTAAGATTCTTGGGCGTACATTACGTGTTGATCATTGTGAACAGTATAAGGTTCCAAATGCAGACATGAGCAAAATTGATGAAGTCACAGCTGCAATAAGGATGGAAGGATGTGCTCCAGTTGCCCCAAAAATTGAAATCGTGAAAAAGGAAAATGTAAAAGAAGGGAAAGTAAAGAAAAAGAAAAGCAAAGAGAAAAAGAGCAAAAAAAAGAAGAAAAAAATTAAAGGTTCAGGCACTACTTCTAGTGAATGA

Protein

MNPMTNVKNVLKLSEHELGSSSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNLNSIKILGRTLRVDHCEQYKVPNADMSKIDEVTAAIRMEGCAPVAPKIEIVKKENVKEGKVKKKKSKEKKSKKKKKKIKGSGTTSSE

Uniprot

Q0ZAL7   A0A212ESE9   S4PWX8   A0A2H1VU74   A0A3S2L1E9   A0A1E1W4D8   + More
A0A194RQ73   A0A0L7KVX3   A0A336LTE9   K7IQH6   A0A084WMZ3   A0A0L7R798   A0A0M9A0T2   A0A0A9XFG1   A0A182VHY4   A0A182IDP7   A0A182XNH3   A0A182LIH9   Q7PSV4   A0A2J7QC08   A0A158NP65   T1HTQ4   A0A0A9XIS0   A0A0K8SL30   A0A195DYN2   A0A2P8YD35   A0A026W3N0   A0A0P4VMY8   A0A2A3E5S6   A0A067RKP4   A0A1S3D8B8   A0A182NAH0   T1GGZ9   V4BGA1   A0A2R7X591   B3NL31   A0A1B0GHV6   A0A0V0GC17   A0A182FA60   B4QA31   B4I601   W5JQH5   W8CCP4   Q9VIS0   A0A2M4AZW7   Q17I22   A0A1B6D7D0   A0A2T7NCV4   B4PB33   A0A1W4VXN8   A0A1B6FS30   A0A0P4X3F4   B3ML59   A0A0P5EC70   A0A182YRM9   A0A0P5ZAP5   A0A0P5XWV6   A0A182Q9G9   B0X8G8   E9G6B3   B4MW90   A0A232FHV1   A0A0J7L7Z7   A0A0L0C5V8   A0A1Q3FCD8   A0A1B6LKV3   A0A034W528   A0A2C9JVM7   A0A0K8USD6   A0A0M4EHA7   A0A023EEK5   A0A0P4YS89   A0A182W440   A0A1D2N2N9   A0A1B6I956   B4LVG7   B4KHW2   F4WF42   A0A1B6LFZ4   A0A1L8DFW7   D6WSD7   A0A2M4B041   B4JR75   A0A182RL48   A0A182U7P0   A0A195CGE1   A0A1Y1LV30   A0A3B0JZU8   A0A0N8E4G2   B4GKW6   A0A1S3JRC8   Q29K01   A0A1S3I8X0   C3XUX9   A0A1B6H2P2   V9LDU9   V9KMT1   H3CQF4  

Pubmed

22118469    23622113    26354079    26227816    20075255    24438588    + More
25401762    20966253    12364791    14747013    17210077    21347285    26823975    29403074    24508170    30249741    27129103    24845553    23254933    17994087    22936249    20920257    23761445    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17510324    17550304    25244985    21292972    28648823    26108605    25348373    15562597    24945155    27289101    18057021    21719571    18362917    19820115    28004739    15632085    18563158    24402279    15496914   

EMBL

DQ648522    ABG42997.1    AGBW02012813    OWR44407.1    GAIX01006013    JAA86547.1    + More
ODYU01004478    SOQ44385.1    RSAL01000257    RVE43409.1    GDQN01009255    JAT81799.1    KQ459896    KPJ19470.1    JTDY01005046    KOB67432.1    UFQT01000178    SSX21194.1    ATLV01024541    KE525352    KFB51587.1    KQ414642    KOC66713.1    KQ435778    KOX74837.1    GBHO01024905    JAG18699.1    APCN01004765    AAAB01008811    EAA04971.6    NEVH01016292    PNF26126.1    ADTU01022253    ACPB03009762    GBHO01024906    GDHC01015976    JAG18698.1    JAQ02653.1    GBRD01011818    JAG54006.1    KQ980066    KYN17941.1    PYGN01000690    PSN42179.1    KK107468    QOIP01000001    EZA50216.1    RLU27062.1    GDKW01002893    JAI53702.1    KZ288379    PBC26632.1    KK852415    KDR24402.1    CAQQ02069696    KB199651    ESP04842.1    KK856922    PTY26580.1    CH954179    EDV54609.1    AJWK01005676    GECL01000606    JAP05518.1    CM000361    CM002910    EDX05561.1    KMY91087.1    CH480822    EDW55807.1    ADMH02000756    ETN65155.1    GAMC01003341    JAC03215.1    AE014134    AAF53845.1    AGB93136.1    GGFK01013013    MBW46334.1    CH477243    EAT46337.1    GEDC01015714    JAS21584.1    PZQS01000014    PVD18999.1    CM000158    EDW90462.1    GECZ01016800    JAS52969.1    GDIP01255045    JAI68356.1    CH902620    EDV31677.1    GDIP01145012    JAJ78390.1    GDIP01059273    JAM44442.1    GDIQ01166987    GDIP01068170    JAK84738.1    JAM35545.1    AXCN02002021    DS232489    EDS42504.1    GL732533    EFX85021.1    CH963857    EDW75960.2    NNAY01000172    OXU30321.1    LBMM01000330    KMR00781.1    JRES01000873    KNC27632.1    GFDL01009873    JAV25172.1    GEBQ01015718    JAT24259.1    GAKP01009760    GAKP01009758    GAKP01009756    GAKP01009754    GAKP01009752    JAC49200.1    GDHF01022707    GDHF01015882    JAI29607.1    JAI36432.1    CP012523    ALC40280.1    GAPW01005796    JAC07802.1    GDIP01225253    JAI98148.1    LJIJ01000272    ODM99529.1    GECU01024264    JAS83442.1    CH940649    EDW63346.1    CH935075    CH933807    EDW05276.2    EDW13399.1    GL888115    EGI67093.1    GEBQ01017407    JAT22570.1    GFDF01008850    JAV05234.1    KQ971352    EFA06628.1    GGFK01013021    MBW46342.1    CH916372    EDV99405.1    KQ977791    KYM99805.1    GEZM01047827    JAV76728.1    OUUW01000010    SPP85942.1    GDIQ01062772    JAN31965.1    CH479184    EDW37282.1    CH379062    EAL32810.1    GG666467    EEN68204.1    GECZ01000879    JAS68890.1    JW878504    AFP11021.1    JW866949    AFO99466.1   

Proteomes

UP000007151    UP000283053    UP000053240    UP000037510    UP000002358    UP000030765    + More
UP000053825    UP000053105    UP000075903    UP000075840    UP000076407    UP000075882    UP000007062    UP000235965    UP000005205    UP000015103    UP000078492    UP000245037    UP000053097    UP000279307    UP000242457    UP000027135    UP000079169    UP000075884    UP000015102    UP000030746    UP000008711    UP000092461    UP000069272    UP000000304    UP000001292    UP000000673    UP000000803    UP000008820    UP000245119    UP000002282    UP000192221    UP000007801    UP000076408    UP000075886    UP000002320    UP000000305    UP000007798    UP000215335    UP000036403    UP000037069    UP000076420    UP000092553    UP000075920    UP000094527    UP000008792    UP000009192    UP000007755    UP000007266    UP000001070    UP000075900    UP000075902    UP000078542    UP000268350    UP000008744    UP000085678    UP000001819    UP000001554    UP000007303   

PRIDE

Q0ZAL7    Q9VIS0   

Pfam

PF00076   RRM_1

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR007779   Rotavirus_VP2       
IPR002343   Hud_Sxl_RNA       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

Q0ZAL7   A0A212ESE9   S4PWX8   A0A2H1VU74   A0A3S2L1E9   A0A1E1W4D8   + More
A0A194RQ73   A0A0L7KVX3   A0A336LTE9   K7IQH6   A0A084WMZ3   A0A0L7R798   A0A0M9A0T2   A0A0A9XFG1   A0A182VHY4   A0A182IDP7   A0A182XNH3   A0A182LIH9   Q7PSV4   A0A2J7QC08   A0A158NP65   T1HTQ4   A0A0A9XIS0   A0A0K8SL30   A0A195DYN2   A0A2P8YD35   A0A026W3N0   A0A0P4VMY8   A0A2A3E5S6   A0A067RKP4   A0A1S3D8B8   A0A182NAH0   T1GGZ9   V4BGA1   A0A2R7X591   B3NL31   A0A1B0GHV6   A0A0V0GC17   A0A182FA60   B4QA31   B4I601   W5JQH5   W8CCP4   Q9VIS0   A0A2M4AZW7   Q17I22   A0A1B6D7D0   A0A2T7NCV4   B4PB33   A0A1W4VXN8   A0A1B6FS30   A0A0P4X3F4   B3ML59   A0A0P5EC70   A0A182YRM9   A0A0P5ZAP5   A0A0P5XWV6   A0A182Q9G9   B0X8G8   E9G6B3   B4MW90   A0A232FHV1   A0A0J7L7Z7   A0A0L0C5V8   A0A1Q3FCD8   A0A1B6LKV3   A0A034W528   A0A2C9JVM7   A0A0K8USD6   A0A0M4EHA7   A0A023EEK5   A0A0P4YS89   A0A182W440   A0A1D2N2N9   A0A1B6I956   B4LVG7   B4KHW2   F4WF42   A0A1B6LFZ4   A0A1L8DFW7   D6WSD7   A0A2M4B041   B4JR75   A0A182RL48   A0A182U7P0   A0A195CGE1   A0A1Y1LV30   A0A3B0JZU8   A0A0N8E4G2   B4GKW6   A0A1S3JRC8   Q29K01   A0A1S3I8X0   C3XUX9   A0A1B6H2P2   V9LDU9   V9KMT1   H3CQF4  

PDB

6FF7     E-value=5.01742e-50,     Score=495

KEGG

733074    K13107 RNA-binding motif protein, X-linked 2 | (RefSeq) Rbmx2; RNA binding motif protein X-linked 2

GO

GO:0003723   GO:0005686   GO:0000398   GO:0003729   GO:0071013   GO:0071011   GO:0003676   GO:0000166   GO:0008484   GO:0016020   GO:0004888   GO:0007166   GO:0016616   GO:0046168   GO:0016491   GO:0003824  

Length:

181

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06498

Exp number, first 60 AAs:

0.06361

Total prob of N-in:

0.25947

outside

1  -  181

 

 

Pi

207.815321

Theta

140.596873

Tajima's D

1.37212

CLR

0

CSRT

0.756012199390031

Interpretation

Uncertain