Silkworm Genome Informatics Database

Gene

KWMTBOMO05072

Pre Gene Modal

BGIBMGA011163

Annotation

PREDICTED:_intracellular_protein_transport_protein_USO1-like_[Bombyx_mori]

Location

Bomo_Chr9(-):7052928-7053837 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.074

CDS

ATGTCGTTGTCACCTGAGATGTCACTGCTTTTATCTAAAATGACGGAACAATTGAACTTGCAAACTGCTACAATTACGGAAAATATAACTGCAGCCATATTACACCAAGTCGACGAAAAAATAAAACCGATCATAGAGGAGAACGAAAAACTGAAGCAGGAAGTTGAGACATTAAACAAAAAGATTCTTACCCTCGCGTCTATTACCAGGAAAAACAATATATTAATTCATGGCTTACCTGAAGAAAATGATGAAAAATTCGAAGATCTAAGTAACCTTGTAAAATCAACATTGTGCGGAATCGAAGTGGAAATTAAAACAGAAGATATTAACATACTTCAGAGACTAGGGAAAAAAGGATCCAGAGATGGCAAAACTAGACCAATTTTGCTTGCTACCACGAGCCTACAGAAGAAAATCCAGATTTTGAAAAATAAAAAGAAATTGAAAGCTGACATATACATCACGCACGATCTACCAAAGGAAGTACTTCTAGCCAAGAAAGGAAATAAAAACAAAAATTCCGGCGACAGCAAAAAAGACACAGAAAAAAGGAAAAGATCTGAAACTCCAAGCCCTGGCAACCCAATTGCAACAAATACGAAGATGCACAAGATAGATGCTTTTCAATACTTACGACAGAGATCACACTCCTTTTCAGAAAAAAAACACAAACAAAAACTAATACTCCATCAAGAACCGGAGGATTACAACCGACAACAACAAACAATCCAAGTCAACATTTATTTGAACTACAACTAA

Protein

MSLSPEMSLLLSKMTEQLNLQTATITENITAAILHQVDEKIKPIIEENEKLKQEVETLNKKILTLASITRKNNILIHGLPEENDEKFEDLSNLVKSTLCGIEVEIKTEDINILQRLGKKGSRDGKTRPILLATTSLQKKIQILKNKKKLKADIYITHDLPKEVLLAKKGNKNKNSGDSKKDTEKRKRSETPSPGNPIATNTKMHKIDAFQYLRQRSHSFSEKKHKQKLILHQEPEDYNRQQQTIQVNIYLNYN

Uniprot

H9JNQ9 A0A2A4JFH2 A0A0L7KQ18 A0A2A4J436 A0A0L7LHT2 A0A0L7LNA7 + More
A0A0L7LKR7 A0A0L7L3X8 A0A2A4JJB3 A0A1E1WPR1 A0A2H1X3Z9 A0A2A4K1M2

Pubmed

19121390 26227816

EMBL

BABH01035234 BABH01035235 NWSH01001568 PCG70835.1 JTDY01007450 KOB65190.1 + More
NWSH01003169 PCG66835.1 JTDY01001071 KOB74965.1 JTDY01000511 KOB76839.1 JTDY01000743 KOB76037.1 JTDY01003098 KOB70157.1 NWSH01001196 PCG72157.1 GDQN01002055 GDQN01002009 JAT88999.1 JAT89045.1 ODYU01013311 SOQ60019.1 NWSH01000260 PCG77926.1

Proteomes

UP000005204 UP000218220 UP000037510

PRIDE

H9JNQ9

Pfam

PF14529 Exo_endo_phos_2

Interpro

IPR004244   Transposase_22        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR027124   Swc5/CFDP2
IPR005135   Endo/exonuclease/phosphatase

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

H9JNQ9 A0A2A4JFH2 A0A0L7KQ18 A0A2A4J436 A0A0L7LHT2 A0A0L7LNA7 + More
A0A0L7LKR7 A0A0L7L3X8 A0A2A4JJB3 A0A1E1WPR1 A0A2H1X3Z9 A0A2A4K1M2

KEGG

105841605 no KO assigned | (RefSeq) intracellular protein transport protein USO1-like

GO

GO:0003964 GO:0004519

PANTHER

PTHR11505 PTHR23227

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.00451

outside

1 - 253

Pi

23.442472

Theta

17.37525

Tajima's D

-0.965032

CLR

433.424662

CSRT

0.141892905354732

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics