Gene

KWMTBOMO05070  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012547

Annotation

PREDICTED:_60S_ribosomal_export_protein_NMD3_[Amyelois_transitella]

Location

Bomo_Chr9(+):7046468-7049676      View in EpiBrowser

Full name

60S ribosomal export protein NMD3      

Location in the cell

Extracellular   Reliability : 1.651 Nuclear   Reliability : 1.783

CDS

ATGGAATACTTTGCTCCAGAAAACGCTTCTTTAAGCAACAATACACGAATATTGTGCTGTCAGTGTGCTGTACCTATAGAAGCAAACCCCTCAAATATGTGTGTAGCTTGTTTAAGGGCTCATGTAGACATCACAGATGGAATACCCAAACAAGCGACATTATTCTTCTGTAGGGGTTGTGAAAGATATTTGCAACCACCCTCTGAGTGGGTTGTGTGTGCATTAGAGTCACGTGAACTCTTAGCTCTCTGTCTCAAGAGATTAAAAGGATTGAGCAGAGTTAAGTTAATTGATGCTGGTTTTGCTTGGACTGAGCCACATTCGAAGAGAATAAAGGTAAAACTAACTGTACAAGGCGAAGTTATCGGAGGAGCAGTGCTCCAGCAGACATTTATAGTTGAATTTACAATTCAACATCAAATGTGCGATGCTTGCCATCGTTCAGAAGCTCAAGATTACTGGCGTGCTTTAGTGCAAGTACGACAAAGAGCTAATAACAGGAAAACATTTTACTATCTTGAACAATTGATATTGAAGCATAAGGCTCATGAAAATACTCTAGGGATCAAGCCCAAGCATGATGGACTAGATTTCTTCTATTCAACAGAGAATCATGCGCGCAAAATGGTTGATTTTATTCAATCTGTTCTGCCTATAAAATGTCAACATTCCAAGAAACTAATTTCGCATGACATACATAGCAATATATACAACTACAAATTTACATTCAGTGTGGAAATTGTACCTCTATCTAAGGACAGTGTTGTGTGTCTTCCAAAGAAACTTACCCAACAATTGGGATCCATTTCACCAATTTGTTTAGTGCACAGAGTAACTAGCACAATTCATTTGATTGACGCTAATAATGGACAAGGTAAGTTGTGGCCTAAAGAGTCAGACGTCCAATCTACTCATATCGATGTGACAATACTGATGCCCAATTCCTGTAGTCCTATAATATTTTTAACACAAATACATAGCTGA

Protein

MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALESRELLALCLKRLKGLSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFTIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTFSVEIVPLSKDSVVCLPKKLTQQLGSISPICLVHRVTSTIHLIDANNGQGKLWPKESDVQSTHIDVTILMPNSCSPIIFLTQIHS

Description

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Similarity

Belongs to the NMD3 family.

Uniprot

A0A194RQ27   A0A2H1WIY3   I4DN29   A0A212EJQ2   S4PXW6   A0A194PDA5   + More
H9JSN6   A0A2A4IT96   A0A2J7RRM1   A0A2J7RRM3   A0A067QU35   A0A0C9R142   A0A0T6B6J3   A0A1Y1KIM4   A0A0C9RHQ5   D6X4U4   A0A0K8TRM1   E2BQM7   E0VQ58   A0A0V0G8L5   A0A0A9Y8T2   A0A224XMR9   K7J8J1   A0A0P4VWJ0   R4FP80   A0A0M8ZSR8   A0A088AJK8   A0A2A3E6R7   A0A2J7RRM9   A0A1B6ET12   A0A1B6I271   A0A2H8TM30   X1WIX7   A0A158NY95   A0A2S2QB92   A0A1I8MNT4   J3JWL7   A0A151ITA0   E9JD41   A0A1W4WGM1   T1PAP7   A0A1A9X037   A0A182SFG9   A0A1I8PHD5   A0A154PDP0   A0A0L7R7D7   A0A182YNN5   A0A336M598   W8BY02   U5EXW8   A0A0L0C4H7   B4JWS1   A0A1B0FCV2   A0A1A9ZLR6   A0A0K8TXD5   A0A0L7KXI1   A0A034VQ24   A0A0A1WFK2   B3MYR9   B4L7V0   A0A1L8DS94   B4MA06   A0A1B6M1Y2   A0A1J1HQZ0   A0A1B6CCI8   A0A0M3QZ98   Q7PNZ3   A0A182HMD5   A0A1C7CZN3   A0A182UNA8   A0A182PB58   A0A182K3T4   A0A182FFP5   O46050   T1D3X6   A0A084WEV6   A0A2M4A964   Q9UB80   W5JC40   B4NQ13   A0A182WAN1   A0A2M3Z4K6   A0A2M3Z471   B4Q196   A0A2M4BKR7   A0A2M4BKX0   A0A182N7U0   A0A182R2N3   Q0IGB3   B3P8X8   Q1HR44   A0A023EUG8   A0A1W4VSF3   B4H380   A0A1Q3G1M9   E9G734   A0A3B0JY72   Q29JL9   A0A195FWB8   A0A151I3Y5  

Pubmed

26354079    22651552    22118469    23622113    19121390    24845553    + More
28004739    18362917    19820115    26369729    20798317    20566863    25401762    26823975    20075255    27129103    21347285    25315136    22516182    23537049    21282665    25244985    24495485    26108605    17994087    26227816    25348373    25830018    12364791    14747013    17210077    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24330624    24438588    20920257    23761445    17550304    17510324    17204158    24945155    26483478    21292972    15632085   

EMBL

KQ459896    KPJ19509.1    ODYU01008886    SOQ52862.1    AK402697    BAM19319.1    + More
AGBW02014409    OWR41717.1    GAIX01004323    JAA88237.1    KQ459606    KPI91316.1    BABH01032097    BABH01032098    NWSH01008037    PCG62716.1    NEVH01000599    PNF43488.1    PNF43483.1    KK853016    KDR12488.1    GBYB01000586    JAG70353.1    LJIG01009627    KRT82701.1    GEZM01086564    JAV59246.1    GBYB01000583    GBYB01000584    GBYB01000587    GBYB01012732    GBYB01014888    JAG70350.1    JAG70351.1    JAG70354.1    JAG82499.1    JAG84655.1    KQ971381    EEZ97240.1    GDAI01000589    JAI17014.1    GL449784    EFN81992.1    DS235389    EEB15514.1    GECL01001752    JAP04372.1    GBHO01016096    GBRD01008241    GDHC01019812    JAG27508.1    JAG57580.1    JAP98816.1    GFTR01006696    JAW09730.1    GDKW01001532    JAI55063.1    ACPB03014781    GAHY01001014    JAA76496.1    KQ435916    KOX68769.1    KZ288349    PBC27408.1    PNF43486.1    GECZ01028683    JAS41086.1    GECU01026680    JAS81026.1    GFXV01002533    MBW14338.1    ABLF02012664    ABLF02033505    ABLF02047324    ADTU01003507    GGMS01005793    MBY74996.1    BT127635    KB632375    AEE62597.1    ERL93932.1    KQ981033    KYN10172.1    GL771866    EFZ09199.1    KA645779    AFP60408.1    KQ434869    KZC09300.1    KQ414642    KOC66748.1    UFQT01000550    UFQT01002626    SSX25190.1    SSX33791.1    GAMC01005107    JAC01449.1    GANO01000707    JAB59164.1    JRES01000994    KNC26349.1    CH916376    EDV95197.1    CCAG010007386    GDHF01033192    JAI19122.1    JTDY01004796    KOB67746.1    GAKP01015027    GAKP01015024    JAC43925.1    GBXI01016826    JAC97465.1    CH902632    EDV32763.1    CH933814    EDW05525.1    GFDF01004813    JAV09271.1    CH940655    EDW66065.1    GEBQ01010036    JAT29941.1    CVRI01000019    CRK90455.1    GEDC01026125    JAS11173.1    CP012528    ALC48999.1    AAAB01008960    EAA11292.5    APCN01004407    AE014298    AY058494    AL009194    AAF45744.1    AAL13723.1    CAA15695.1    GALA01001183    JAA93669.1    ATLV01023259    KE525341    KFB48750.1    GGFK01003949    MBW37270.1    AJ238705    CAB42049.1    ADMH02001932    ETN60435.1    CH964291    EDW86238.1    GGFM01002682    MBW23433.1    GGFM01002566    MBW23317.1    CM000162    EDX01403.2    GGFJ01004504    MBW53645.1    GGFJ01004503    MBW53644.1    CH477260    EAT45726.1    CH954183    EDV45583.1    DQ440250    ABF18283.1    JXUM01096995    GAPW01001022    KQ564308    JAC12576.1    KXJ72449.1    CH479205    EDW30773.1    GFDL01001331    JAV33714.1    GL732534    EFX84398.1    OUUW01000003    SPP78709.1    CH379063    EAL32282.2    KQ981204    KYN44960.1    KQ976462    KYM84648.1   

Proteomes

UP000053240    UP000007151    UP000053268    UP000005204    UP000218220    UP000235965    + More
UP000027135    UP000007266    UP000008237    UP000009046    UP000002358    UP000015103    UP000053105    UP000005203    UP000242457    UP000007819    UP000005205    UP000095301    UP000030742    UP000078492    UP000192223    UP000091820    UP000075901    UP000095300    UP000076502    UP000053825    UP000076408    UP000037069    UP000001070    UP000092444    UP000092445    UP000037510    UP000007801    UP000009192    UP000008792    UP000183832    UP000092553    UP000007062    UP000075840    UP000075882    UP000075903    UP000075885    UP000075881    UP000069272    UP000000803    UP000030765    UP000000673    UP000007798    UP000075920    UP000002282    UP000075884    UP000075900    UP000008820    UP000008711    UP000069940    UP000249989    UP000192221    UP000008744    UP000000305    UP000268350    UP000001819    UP000078541    UP000078540   

PRIDE

H9JSN6    O46050    Q9UB80   

Pfam

PF04981   NMD3        + More
PF00149   Metallophos

Interpro

IPR007064   Nmd3_N        + More
IPR039768   Nmd3       
IPR041805   ASMase/PPN1_MPP       
IPR011001   Saposin-like       
IPR008139   SaposinB_dom       
IPR004843   Calcineurin-like_PHP_ApaH       
IPR002173   Carboh/pur_kinase_PfkB_CS       

SUPFAM

SSF47862   SSF47862       

CDD

cd00842  MPP_ASMase

ProteinModelPortal

A0A194RQ27   A0A2H1WIY3   I4DN29   A0A212EJQ2   S4PXW6   A0A194PDA5   + More
H9JSN6   A0A2A4IT96   A0A2J7RRM1   A0A2J7RRM3   A0A067QU35   A0A0C9R142   A0A0T6B6J3   A0A1Y1KIM4   A0A0C9RHQ5   D6X4U4   A0A0K8TRM1   E2BQM7   E0VQ58   A0A0V0G8L5   A0A0A9Y8T2   A0A224XMR9   K7J8J1   A0A0P4VWJ0   R4FP80   A0A0M8ZSR8   A0A088AJK8   A0A2A3E6R7   A0A2J7RRM9   A0A1B6ET12   A0A1B6I271   A0A2H8TM30   X1WIX7   A0A158NY95   A0A2S2QB92   A0A1I8MNT4   J3JWL7   A0A151ITA0   E9JD41   A0A1W4WGM1   T1PAP7   A0A1A9X037   A0A182SFG9   A0A1I8PHD5   A0A154PDP0   A0A0L7R7D7   A0A182YNN5   A0A336M598   W8BY02   U5EXW8   A0A0L0C4H7   B4JWS1   A0A1B0FCV2   A0A1A9ZLR6   A0A0K8TXD5   A0A0L7KXI1   A0A034VQ24   A0A0A1WFK2   B3MYR9   B4L7V0   A0A1L8DS94   B4MA06   A0A1B6M1Y2   A0A1J1HQZ0   A0A1B6CCI8   A0A0M3QZ98   Q7PNZ3   A0A182HMD5   A0A1C7CZN3   A0A182UNA8   A0A182PB58   A0A182K3T4   A0A182FFP5   O46050   T1D3X6   A0A084WEV6   A0A2M4A964   Q9UB80   W5JC40   B4NQ13   A0A182WAN1   A0A2M3Z4K6   A0A2M3Z471   B4Q196   A0A2M4BKR7   A0A2M4BKX0   A0A182N7U0   A0A182R2N3   Q0IGB3   B3P8X8   Q1HR44   A0A023EUG8   A0A1W4VSF3   B4H380   A0A1Q3G1M9   E9G734   A0A3B0JY72   Q29JL9   A0A195FWB8   A0A151I3Y5  

PDB

5T6R     E-value=2.67868e-82,     Score=777

KEGG

101739071    K07562 nonsense-mediated mRNA decay protein 3 | (RefSeq) 60S ribosomal export protein NMD3

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0043023   GO:0005634   GO:0015031   GO:0005737   GO:0016787   GO:0000055   GO:0016773  

PANTHER

PTHR12746  

Subcellular location

Cytoplasm  
Nucleus  

Length:

327

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01186

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.00974

outside

1  -  327

 

 

Pi

244.105955

Theta

193.860347

Tajima's D

0.867678

CLR

0

CSRT

0.623018849057547

Interpretation

Possibly Positive selection