Silkworm Genome Informatics Database

Gene

KWMTBOMO05061

Pre Gene Modal

BGIBMGA012557

Annotation

PREDICTED:_toll-like_receptor_3_[Bombyx_mori]

Location

Bomo_Chr9(-):6946632-6947897 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.473

CDS

ATGGTTGGTTCTAAAATTGGAGATAGGGTTTTGAACGAAAGTACATCAAGTCAAAACCTGAAGACGGAATACTCACCATACCAACTTAATCACCATCAATACGCTCAATACATTGGCATGTCCGCAGTATTCACCTTGATAATAATAGCTGTAATTATATGGGCGAGTTTTCGATTTAGGCAAAGACGGCGAGTTCCAGTCGTCAGCCCACAAAACGACGACCAAATAGAAGTATCAAACATTTCCGGCAGAGTGCTGTGGTGA

Protein

MVGSKIGDRVLNESTSSQNLKTEYSPYQLNHHQYAQYIGMSAVFTLIIIAVIIWASFRFRQRRRVPVVSPQNDDQIEVSNISGRVLW

Uniprot

H9JSP6 A0A194RPT7 A0A0L7LHN2 A0A194PE55 A0A3S2TSP5 A0A2H1WKZ0 + More

Pubmed

19121390 26354079 26227816

EMBL

BABH01032112 KQ459896 KPJ19517.1 JTDY01001087 KOB74920.1 KQ459606 + More
KPI91308.1 RSAL01000007 RVE54054.1 ODYU01009372 SOQ53750.1

Proteomes

UP000005204 UP000053240 UP000037510 UP000053268 UP000283053

PRIDE

H9JSP6

Pfam

PF13855   LRR_8        + More
PF13516   LRR_6
PF00560   LRR_1

Interpro

IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt
IPR003591   Leu-rich_rpt_typical-subtyp

Gene 3D

3.80.10.10

ProteinModelPortal

H9JSP6 A0A194RPT7 A0A0L7LHN2 A0A194PE55 A0A3S2TSP5 A0A2H1WKZ0 + More

KEGG

101745032 no KO assigned | (RefSeq) toll-like receptor 3

GO

GO:0016021

Length:

87

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.26017

Exp number, first 60 AAs:

22.26005

Total prob of N-in:

0.03041

POSSIBLE N-term signal

sequence

outside

1 - 34

TMhelix

35 - 57

inside

58 - 87

Pi

120.380293

Theta

141.981025

Tajima's D

-0.850783

CLR

303.613444

CSRT

0.167591620418979

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics