Silkworm Genome Informatics Database

Gene

KWMTBOMO05053

Pre Gene Modal

BGIBMGA012539

Annotation

PREDICTED:_opsin?_ultraviolet-sensitive_[Bombyx_mori]

Location

Bomo_Chr9(+):6658853-6667068 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.888

CDS

ATGGATACAGTGCCAAAAGGTATAAACAATTTAACGTATTTGAAAAGAGATGATCATGCTCTATTCAGTTCTAAATATGACGATGAAACTCTTACGAAAGGTGACATAAAATTGTGGAAAAGACGTCGCAGAATGTCTGAAATTTTGGACAGAAGATCAAATGTAAGCGGTGAGGTCAAAGAAACTAGACTACCAATAAAGTATTCCAAGTACGAAGTGAATGAATTGGTTTCATCGGAAGCTAACAACGAGGTATTAATAAAAAAATTCAAAGAACTTTGGCCAGTAAATTTATGGCGTCGCTTTGGCCTGTTTACCGATGATTATCTACACTTGGTGAATCCATACTGGCTGAGCTTCGCCCCGCCACATCCTTTACTGCATTATGGCCTCGGTGCATTCTACATCATGATGACCACTGTTGGGTCCACTGGCAATGCTTTGGTGATGTTCATGTATTTTAGATGCCGTTCCCTGAGAACGCCGGGAAATATTCTAGTTGCAAATCTAGCATTGAGTGATTTTATGATGCTTGCGAAGACACCTATTTTTATATTTAATTCGTTTAACCTCGGACCAGCTTTAGGCAAAACTGGTTGCGTTATTTATGGATTTGTTGGTGGGTTAACAGGAACTACGTCAATAGCAATCCTAACCGCAATATCCTTAGATCGGTACTGGGCGGTCGTGCGGCCATTGGAACCACTACGAGCTCTGACTGCCATCCGTGCTCGACTCATGGCAATAGCTGCATGGATTTACGCTACATTATTTGCCATAATTCCAGCCTTGGATATAGGTTACGGTCGCTACGTGCCCGAAGGATTCCTGACAAGCTGTAGTTTTGATTATCTAACTGAAGAACTTCCGCCTCGCTATTTCATTTTTGTATTTTTTTGCGCAGCCTGGCTCGCGCCTTTCTGCACCATATCGTACTGTTATATAAGCATATTTCGGGTTGTCGTATGTAGTCGAAATATTACTACAAAAAATCAAGAACAACGGCTCTCCACGAGACATGTAAAGGAGCGAACAAAACGTAAAGCTGAAATCAAACTTGCCTTTTTGGTTATAGTTGTAATTGCATTGTTTTTTATTTCATGGACACCGTATGCAATTGTTGCACTTTTAGGAATATTTGGAAAAAAGGATCTTATCAAACCGCTAACATCCATGATACCTGCATTATTTTGTAAAACAGCCGCTTGTATTAATCCTTTCATTTATATCATTACTCATCCTAAATTTCGAAAGGAATTCAAGAGAATGTTGTCCAGAGATAAAACAGAACGAAGTGGAACAATAAAAACTATTGGATATTATACTGAAGCGAGTAAATTCCATCGTCCTAGTAAGGACTTCAGTGACACTGAAGTTGAAATAGTTGAAATGAAAGATATACCGTACCGAAATGAAGACACAACTAACACAGTTGAAGAAAAAATTAATACGGTGTCTGCTAAATTAGCTAAACGAGAAGGATCGCAAAAATCGCAAAGTAGTATCAGCATGAAAAGTTTCGAAGAAAACGTTGTGAGTCCCCCTTCGTGGTATTGTAAACCGAAATTCGCCAAAAAAAAGAGTTTCCATCGTCGTTCTACACATAGTATGGTTTCTCAAAATACCGATCCAACTGTCTAA

Protein

MDTVPKGINNLTYLKRDDHALFSSKYDDETLTKGDIKLWKRRRRMSEILDRRSNVSGEVKETRLPIKYSKYEVNELVSSEANNEVLIKKFKELWPVNLWRRFGLFTDDYLHLVNPYWLSFAPPHPLLHYGLGAFYIMMTTVGSTGNALVMFMYFRCRSLRTPGNILVANLALSDFMMLAKTPIFIFNSFNLGPALGKTGCVIYGFVGGLTGTTSIAILTAISLDRYWAVVRPLEPLRALTAIRARLMAIAAWIYATLFAIIPALDIGYGRYVPEGFLTSCSFDYLTEELPPRYFIFVFFCAAWLAPFCTISYCYISIFRVVVCSRNITTKNQEQRLSTRHVKERTKRKAEIKLAFLVIVVIALFFISWTPYAIVALLGIFGKKDLIKPLTSMIPALFCKTAACINPFIYIITHPKFRKEFKRMLSRDKTERSGTIKTIGYYTEASKFHRPSKDFSDTEVEIVEMKDIPYRNEDTTNTVEEKINTVSAKLAKREGSQKSQSSISMKSFEENVVSPPSWYCKPKFAKKKSFHRRSTHSMVSQNTDPTV

Similarity

Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
Belongs to the G-protein coupled receptor 1 family.

Uniprot

H9JSM8 A0A3S2NLN1 A0A2A4JBM5 A0A2H1X2N1 A0A194PJN6 A0A0L7KSR8 + More
A0A2S2PB62 A0A2S2QBI1 A0A2U8T6X9 J9JXD7 A0A0C6FZE9 A0A0C6G526 A0A0C6FPL1 A0A0C6FPP1 A0A0C6G2L6 A0A0I9RJ65 A0A1A9WEB5 B4IWN4 A0A1I8Q180 A0A1J1J4M5

Pubmed

19121390 26354079 26227816 24952173 17994087

EMBL

BABH01032141 RSAL01000007 RVE54062.1 NWSH01002106 PCG69166.1 ODYU01012934 + More
SOQ59476.1 KQ459606 KPI91300.1 JTDY01006086 KOB66307.1 GGMR01014084 MBY26703.1 GGMS01005880 MBY75083.1 MF434481 AWM72040.1 ABLF02040785 ABLF02040802 ABLF02040811 ABLF02040817 ABLF02040819 ABLF02040820 ABLF02040832 MF434482 AWM72041.1 LC009260 BAQ54908.1 LC009237 BAQ54884.1 LC009099 BAQ54741.1 LC009123 BAQ54766.1 LC009059 BAQ54697.1 BK008815 DAA64804.1 CH916366 EDV96260.1 CVRI01000067 CRL06422.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000053268 UP000037510 UP000007819 + More
UP000091820 UP000001070 UP000095300 UP000183832

PRIDE

H9JSM8

Pfam

PF00001   7tm_1        + More
PF00551   Formyl_trans_N
PF02911   Formyl_trans_C

Interpro

IPR001760   Opsin        + More
IPR017452   GPCR_Rhodpsn_7TM
IPR027430   Retinal_BS
IPR000276   GPCR_Rhodpsn
IPR000856   Opsin_RH3/RH4
IPR041711   Met-tRNA-FMT_N
IPR036477   Formyl_transf_N_sf
IPR002376   Formyl_transf_N
IPR037022   Formyl_trans_C_sf
IPR011034   Formyl_transferase-like_C_sf
IPR005794   Fmt
IPR005793   Formyl_trans_C

SUPFAM

SSF50486 SSF50486 + More
SSF53328 SSF53328

Gene 3D

3.10.25.10

CDD

cd08646 FMT_core_Met-tRNA-FMT_N

ProteinModelPortal

H9JSM8 A0A3S2NLN1 A0A2A4JBM5 A0A2H1X2N1 A0A194PJN6 A0A0L7KSR8 + More
A0A2S2PB62 A0A2S2QBI1 A0A2U8T6X9 J9JXD7 A0A0C6FZE9 A0A0C6G526 A0A0C6FPL1 A0A0C6FPP1 A0A0C6G2L6 A0A0I9RJ65 A0A1A9WEB5 B4IWN4 A0A1I8Q180 A0A1J1J4M5

PDB

3AYN E-value=6.54343e-47, Score=474

KEGG

101745467 K04255 r-opsin | (RefSeq) opsin, ultraviolet-sensitive

GO

GO:0016021 GO:0018298 GO:0004930 GO:0007602 GO:0009881 GO:0007601 GO:0004479 GO:0043153 GO:0048512 GO:0016056 GO:0009906 GO:0007186 GO:0005230 GO:0006810 GO:0016020 GO:0016742 GO:0003824

Subcellular location

Membrane

Length:

546

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

160.67882

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07006

outside

1 - 128

TMhelix

129 - 151

inside

152 - 163

TMhelix

164 - 186

outside

187 - 200

TMhelix

201 - 223

inside

224 - 243

TMhelix

244 - 266

outside

267 - 292

TMhelix

293 - 315

inside

316 - 352

TMhelix

353 - 375

outside

376 - 389

TMhelix

390 - 412

inside

413 - 546

Pi

258.779833

Theta

199.826356

Tajima's D

1.019334

CLR

0

CSRT

0.661816909154542

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics