Gene

KWMTBOMO05047

Pre Gene Modal

BGIBMGA012565

Annotation

PREDICTED:_decaprenyl-diphosphate_synthase_subunit_1_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr9(-):6486424-6537282      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.933

CDS

ATGGCGTGTTTAAGTTCGAGTAGGCTCTGTGCTCGTGTTCAGGATAAGTTAATGTGTCAATTTGGACATAAACTTCGAAAACAAACTGTATTTGTGAAACTCAAACCTCCTGGACCATCTCCGTTGCGGACATTTGGAAAGACATGTCAGACGGTCACGACATGCGGTCCGACATGTGGAGCCGGCAGTTTACCGGTCCCCGGCGGCTTAGTGCGCCGCTTCGCCTCCAATTTACAGAGCACAAGCACCGGCTCTCTGCCGGATTACGGCACACAGATCATTGATCCATATCGCTTATTAGAAGATGACCTTAATGGAATATATGAGGATATTAGATCGGAACTAGAAAGAAACACAAACCAATCAGAATTGAACACCATAGCCACATACTACTTCGACGGACAAGGCAAGGCACTCAGACCGATGGTTGCGATTTTAATGGCCAGGGCTGTCAACTACCACGTTTACGGAGAGAACAGTGCACTGCTACCGTCGCAGCGACAAGTGGCGATGATCAGTGAGATGATCCACTCGGCGTCTCTGATCCACGATGATGTCATCGACCAAAGCGACTTCCGTCGCGGGAAACCCTCCGTCAACGTGCTCTGGAATCACAAAAAGGTGGCGATGGCCGGCGACTTCATCCTCGCTGTGGCGTCGATGATGATAGCTCGCTTGCGCAGCGATGATGTCACACTCGTGCTCAGTCAAGTGGTAACAGATTTGGTGCAGGGCGAATTCATGCAACTTGGCAGCAAAGAAACTGAAAACGAGCGGTTCGCTCACTACCTCACAAAGACGTACAGGAAGACGGCTTCATTAATTGCTAATTCCGTTAAGGCGGTCGCCTTACTGAGCGGCGCCGACGAGAGCACGTGCGAGTTGGCGTTCCAATACGGACGGAACTTGGGGCTCGCGTTTCAGCTCGTCGACGACTTGTTGGACTTCGTGTCTTCAGCACAGGCTATGGGCAAGCCCACCGCGGCCGACCTCAAGCTCGGTCTTGCCACCGCGCCTGTTCTATTCGCCTGCGAAAAGTATCCGGAGCTGAATCCGATGATAATGAGGCGGTTCCAAGAGTCCGGCGACGTGGAGAAGGCGTTCGAATTGGTCCACAAGTCTCGCGGCCTCGAGCAGACGCGTTTCCTAGCGCGCAAGCACGGCGCCGAGGCCGCGAGACTGGCGGCCGACCTGGCTGACTCGCCCTACCAGAAGGGACTAGTGCTCACCACCGACCTCGTCCTCAACAGGATCAAATAG

Protein

MACLSSSRLCARVQDKLMCQFGHKLRKQTVFVKLKPPGPSPLRTFGKTCQTVTTCGPTCGAGSLPVPGGLVRRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGKALRPMVAILMARAVNYHVYGENSALLPSQRQVAMISEMIHSASLIHDDVIDQSDFRRGKPSVNVLWNHKKVAMAGDFILAVASMMIARLRSDDVTLVLSQVVTDLVQGEFMQLGSKETENERFAHYLTKTYRKTASLIANSVKAVALLSGADESTCELAFQYGRNLGLAFQLVDDLLDFVSSAQAMGKPTAADLKLGLATAPVLFACEKYPELNPMIMRRFQESGDVEKAFELVHKSRGLEQTRFLARKHGAEAARLAADLADSPYQKGLVLTTDLVLNRIK

Similarity

Belongs to the FPP/GGPP synthase family.

Uniprot

A0A212F9C8   A0A0N1PGS1   G9D512   A0A2A4JK80   A0A1B6KSJ0   A0A1B6GMQ4   + More
A0A1B6DIQ4   A0A1Y1MX09   A0A0C9Q793   A0A154P407   K7JBK8   D6WAF3   A0A0L7QLJ7   A0A232ET71   A0A067QX52   A0A224XQ55   A0A023F505   A0A1L8DZU4   J9K4T0   A0A1L8DZQ2   V5UUH0   A0A0T6AYV0   A0A2H8TKV8   A0A2C9H5R7   M9VU49   Q5TV64   A0A2C9GPJ6   A0A182JJT3   A0A2M4A8N7   A0A2M3Z5T0   A0A2M4A8N0   A0A2M3Z5P8   A0A084VNV0   A0A2M4BNT9   A0A026VYX6   A0A2M4CUI7   A0A2M4CUG1   A0A2M4A527   A0A0L0CEU7   A0A2M3Z370   A0A0A1WFE6   A0A2M4BKU5   A0A0M5J5L1   B3P7R1   A0A195DY43   B4GNS0   A0A2M4BJ41   A0A1W4UJU4   Q29BC6   B4PNB8   W8BDU2   A0A3B0K6B0   A0A034VA95   A0A0K8UDS6   Q9V9Z3   A0A195B7S7   F4WZX1   B4LW00   B3M080   A0A1Q3FU52   B4NH17   A0A1Q3FUM2   A0A1Q3FU57   A0A1Q3FUI1   A0A1A9VVE4   A0A1Q3FU35   A0A1B0CK66   A0A1Q3FU59   A0A1Q3FU96   A0A1Q3FUL0   B4JI23   B4K4J3   A0A1B0G312   T1P8F4   A0A1A9XTG1   A0A1A9ZJJ3   E2AMF4   A0A3L8DMT1   A0A182Q2S2   A0A1J1HPS1   A0A151XAF4   A0A1I8PDC6   A0A0K8VLI7   B4I007   B4QSK9   A0A0K8UWD0   A0A0K8SQK6   E2C655   A0A182P568   A0A182VZ71   A0A182R669   A0A182JSE6   A0A195FEF4   A0A151ICL0   A0A1B6JR16   A0A182MTW1   A0A182YAP7   A0A182X0B1   A0A0A9ZEP0   A0A182TH73  

Pubmed

22118469    26354079    21967427    28004739    20075255    18362917    + More
19820115    28648823    24845553    25474469    24246678    12364791    14747013    17210077    24438588    24508170    26108605    25830018    17994087    15632085    17550304    24495485    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21719571    18057021    25315136    20798317    30249741    26823975    25244985    25401762   

EMBL

AGBW02009609    OWR50330.1    KQ461133    KPJ08874.1    JF777415    AEU11760.1    + More
NWSH01001295    PCG71810.1    GEBQ01025580    JAT14397.1    GECZ01006041    JAS63728.1    GEDC01011783    JAS25515.1    GEZM01018559    JAV90173.1    GBYB01010018    JAG79785.1    KQ434803    KZC05958.1    AAZX01008745    AAZX01020998    KQ971312    EEZ98009.2    KQ414915    KOC59495.1    NNAY01002346    OXU21496.1    KK852865    KDR14770.1    GFTR01006153    JAW10273.1    GBBI01002116    JAC16596.1    GFDF01002168    JAV11916.1    ABLF02029495    ABLF02029496    GFDF01002167    JAV11917.1    KF673861    AHB81557.1    LJIG01022495    KRT80273.1    GFXV01002972    MBW14777.1    KC431243    AGJ83979.1    AAAB01008846    EAL41155.4    APCN01001103    APCN01001104    GGFK01003836    MBW37157.1    GGFM01003104    MBW23855.1    GGFK01003804    MBW37125.1    GGFM01003096    MBW23847.1    ATLV01014925    ATLV01014926    ATLV01014927    ATLV01014928    ATLV01014929    KE524996    KFB39644.1    GGFJ01005574    MBW54715.1    KK107681    EZA48064.1    GGFL01004805    MBW68983.1    GGFL01004806    MBW68984.1    GGFK01002534    MBW35855.1    JRES01000501    KNC30742.1    GGFM01002216    MBW22967.1    GBXI01017154    JAC97137.1    GGFJ01004549    MBW53690.1    CP012526    ALC47961.1    CH954182    EDV52969.1    KQ980107    KYN17627.1    CH479186    EDW38803.1    GGFJ01003926    MBW53067.1    CM000070    EAL27072.2    CM000160    EDW99200.2    GAMC01011394    GAMC01011392    JAB95163.1    OUUW01000005    SPP81156.1    GAKP01020464    GAKP01020462    GAKP01020456    GAKP01020452    JAC38488.1    GDHF01032040    GDHF01027492    GDHF01024485    GDHF01017285    GDHF01015602    GDHF01007310    GDHF01004066    GDHF01002098    GDHF01002061    JAI20274.1    JAI24822.1    JAI27829.1    JAI35029.1    JAI36712.1    JAI45004.1    JAI48248.1    JAI50216.1    JAI50253.1    AE014297    BT044087    AAF57135.2    ACH92152.1    AHN57618.1    KQ976574    KYM80300.1    GL888480    EGI60261.1    CH940650    EDW66505.1    KRF82727.1    CH902617    EDV42037.1    GFDL01003916    JAV31129.1    CH964272    EDW84514.1    GFDL01003912    JAV31133.1    GFDL01003915    JAV31130.1    GFDL01003909    JAV31136.1    GFDL01003914    JAV31131.1    AJWK01015817    AJWK01015818    GFDL01003911    JAV31134.1    GFDL01003908    JAV31137.1    GFDL01003913    JAV31132.1    CH916369    EDV93943.1    CH933806    EDW13945.1    CCAG010021770    KA644919    AFP59548.1    GL440813    EFN65378.1    QOIP01000006    RLU21586.1    AXCN02001244    CVRI01000015    CRK89963.1    KQ982339    KYQ57343.1    GDHF01031272    GDHF01012869    JAI21042.1    JAI39445.1    CH480819    EDW53614.1    CM000364    EDX15106.1    GDHF01021428    JAI30886.1    GBRD01010714    GDHC01009406    JAG55110.1    JAQ09223.1    GL452926    EFN76575.1    KQ981625    KYN39060.1    KQ978053    KYM97779.1    GECU01006363    JAT01344.1    AXCM01012380    AXCM01012381    GBHO01001771    JAG41833.1   

Proteomes

UP000007151    UP000053240    UP000218220    UP000076502    UP000002358    UP000007266    + More
UP000053825    UP000215335    UP000027135    UP000007819    UP000075903    UP000007062    UP000075840    UP000075880    UP000030765    UP000053097    UP000037069    UP000092553    UP000008711    UP000078492    UP000008744    UP000192221    UP000001819    UP000002282    UP000268350    UP000000803    UP000078540    UP000007755    UP000008792    UP000007801    UP000007798    UP000078200    UP000092461    UP000001070    UP000009192    UP000092444    UP000095301    UP000092443    UP000092445    UP000000311    UP000279307    UP000075886    UP000183832    UP000075809    UP000095300    UP000001292    UP000000304    UP000008237    UP000075885    UP000075920    UP000075900    UP000075881    UP000078541    UP000078542    UP000075883    UP000076408    UP000076407    UP000075902   

PRIDE

Q9V9Z3   

Pfam

PF00348   polyprenyl_synt        + More
PF01433   Peptidase_M1
PF11838   ERAP1_C

Interpro

IPR008949   Isoprenoid_synthase_dom_sf        + More
IPR033749   Polyprenyl_synt_CS       
IPR000092   Polyprenyl_synt       
IPR024571   ERAP1-like_C_dom       
IPR014782   Peptidase_M1_dom       
IPR042097   Aminopeptidase_N-like_N       
IPR033581   APN2       

SUPFAM

SSF48576   SSF48576       

Gene 3D

1.10.600.10     2.60.40.1730    

ProteinModelPortal

A0A212F9C8   A0A0N1PGS1   G9D512   A0A2A4JK80   A0A1B6KSJ0   A0A1B6GMQ4   + More
A0A1B6DIQ4   A0A1Y1MX09   A0A0C9Q793   A0A154P407   K7JBK8   D6WAF3   A0A0L7QLJ7   A0A232ET71   A0A067QX52   A0A224XQ55   A0A023F505   A0A1L8DZU4   J9K4T0   A0A1L8DZQ2   V5UUH0   A0A0T6AYV0   A0A2H8TKV8   A0A2C9H5R7   M9VU49   Q5TV64   A0A2C9GPJ6   A0A182JJT3   A0A2M4A8N7   A0A2M3Z5T0   A0A2M4A8N0   A0A2M3Z5P8   A0A084VNV0   A0A2M4BNT9   A0A026VYX6   A0A2M4CUI7   A0A2M4CUG1   A0A2M4A527   A0A0L0CEU7   A0A2M3Z370   A0A0A1WFE6   A0A2M4BKU5   A0A0M5J5L1   B3P7R1   A0A195DY43   B4GNS0   A0A2M4BJ41   A0A1W4UJU4   Q29BC6   B4PNB8   W8BDU2   A0A3B0K6B0   A0A034VA95   A0A0K8UDS6   Q9V9Z3   A0A195B7S7   F4WZX1   B4LW00   B3M080   A0A1Q3FU52   B4NH17   A0A1Q3FUM2   A0A1Q3FU57   A0A1Q3FUI1   A0A1A9VVE4   A0A1Q3FU35   A0A1B0CK66   A0A1Q3FU59   A0A1Q3FU96   A0A1Q3FUL0   B4JI23   B4K4J3   A0A1B0G312   T1P8F4   A0A1A9XTG1   A0A1A9ZJJ3   E2AMF4   A0A3L8DMT1   A0A182Q2S2   A0A1J1HPS1   A0A151XAF4   A0A1I8PDC6   A0A0K8VLI7   B4I007   B4QSK9   A0A0K8UWD0   A0A0K8SQK6   E2C655   A0A182P568   A0A182VZ71   A0A182R669   A0A182JSE6   A0A195FEF4   A0A151ICL0   A0A1B6JR16   A0A182MTW1   A0A182YAP7   A0A182X0B1   A0A0A9ZEP0   A0A182TH73  

PDB

3APZ     E-value=6.96884e-57,     Score=559

KEGG

101737469    K12504 decaprenyl-diphosphate synthase subunit 1 [EC:2.5.1.91] | (RefSeq) decaprenyl-diphosphate syn

PATHWAY

00900    Terpenoid backbone biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0008299   GO:0016740   GO:0014019   GO:0098780   GO:0043066   GO:1990234   GO:0008237   GO:0008270   GO:0006508   GO:0008233   GO:0007267   GO:0007275   GO:0005685   GO:0003677   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR11533:SF246  

Length:

419

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06478

Exp number, first 60 AAs:

0.00234

Total prob of N-in:

0.00863

outside

1  -  419

 

 

Pi

230.708339

Theta

186.462184

Tajima's D

0.466301

CLR

1.285922

CSRT

0.505224738763062

Interpretation

Uncertain