Silkworm Genome Informatics Database

Gene

KWMTBOMO05042

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr9(-):6387200-6388702 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.793 PlasmaMembrane Reliability : 1.272

CDS

ATGGAGCGAATAATAAATACACAACTCCTGAAGTATCTTGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGCTACCATCTTACGGAATCCCCGAGGGACTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGCTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGCGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTAGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCAAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTTGGTTCCCTCTGTATTCTGTACCGCATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGTGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSAVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Cofactor

pyridoxal 5'-phosphate

Uniprot

Q6UV17 A0A3S2NMS5 A0A3S2NTH0 A0A3S2LP03 A0A3S2LQP1 A0A3S2L424 + More
A0A3D5S1K1 A0A0P4VXU0 T2M4I6 A0A0P4VTV9 A0A1E1XGQ7 A0A0P4VVV8 A0A147BNQ9 A0A0P4VX79 A0A131Y4I8 A0A0P4VPK5

Pubmed

30148503 24065732 28503490 29652888

EMBL

AY359886 AAQ57129.1 RSAL01000002 RVE54942.1 RSAL01000090 RVE48098.1 + More
RSAL01002067 RVE40593.1 RSAL01000422 RVE41792.1 RSAL01000171 RVE45150.1 DPOC01000269 HCX22453.1 GDRN01105059 JAI57791.1 HAAD01000593 CDG66825.1 GDRN01111334 JAI56796.1 GFAC01000919 JAT98269.1 GDRN01111277 JAI56804.1 GEGO01003312 JAR92092.1 GDRN01111326 JAI56798.1 GEFM01002394 JAP73402.1 GDRN01111278 JAI56803.1

Proteomes

UP000283053

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF04939   RRS1
PF01585   G-patch
PF00282   Pyridoxal_deC
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR007023   Ribosom_reg
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR015424   PyrdxlP-dep_Trfase
IPR002129   PyrdxlP-dep_de-COase
IPR021115   Pyridoxal-P_BS
IPR015421   PyrdxlP-dep_Trfase_major
IPR015422   PyrdxlP-dep_Trfase_dom1
IPR010977   Aromatic_deC
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928
SSF53383   SSF53383
SSF57667   SSF57667

Gene 3D

3.60.10.10 3.30.70.330 3.40.640.10 3.90.1150.10

CDD

cd12647 RRM_UHM_SPF45

ProteinModelPortal

Q6UV17 A0A3S2NMS5 A0A3S2NTH0 A0A3S2LP03 A0A3S2LQP1 A0A3S2L424 + More
A0A3D5S1K1 A0A0P4VXU0 T2M4I6 A0A0P4VTV9 A0A1E1XGQ7 A0A0P4VVV8 A0A147BNQ9 A0A0P4VX79 A0A131Y4I8 A0A0P4VPK5

PDB

6AR3 E-value=0.000116885, Score=109

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0003723 GO:0016021 GO:0003676

PANTHER

PTHR17602 PTHR13288 PTHR45951:SF3

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06013

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00847

outside

1 - 438

Pi

32.503901

Theta

42.478618

Tajima's D

-0.724058

CLR

0

CSRT

0.198690065496725

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree