Silkworm Genome Informatics Database

Gene

KWMTBOMO05039

Annotation

hypothetical_protein_RR46_04321_[Papilio_xuthus]

Location

Bomo_Chr9(+):6332017-6355130 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.988

CDS

ATGGGTCGCAACTCTGGCGGAGTCGACGCGAATGGCGAACTCCGGATTCTGCTGGTAGTGACGGTCGTGGTGGGGTTACTCCTCATGTTTTCATTGCTCATGTGTTACGCGTGCGTATTGAAGCGACTGTGCTGTGGCACGCCCAGGGAACGTGCTAAGAATGTTGCTTGTGGCAGAAGAACCGAAAGCTATCCTATGGGTGACGTCACTCTACTCTCCCAACCAACAGAAAGTGAAAGAGTCTAG

Protein

MGRNSGGVDANGELRILLVVTVVVGLLLMFSLLMCYACVLKRLCCGTPRERAKNVACGRRTESYPMGDVTLLSQPTESERV

Uniprot

A0A194QE60 A0A0N0PAX6 A0A212EYZ9 A0A1B0D084 A0A154P203 A0A182JF62 + More

Pubmed

26354079 22118469

EMBL

KQ459144 KPJ03709.1 KQ461133 KPJ08881.1 AGBW02011400 OWR46719.1 + More
AJVK01021320 KQ434803 KZC05965.1

Proteomes

UP000053268 UP000053240 UP000007151 UP000092462 UP000076502 UP000075880 + More

Pfam

PF12796   Ank_2        + More
PF00520   Ion_trans
PF08344   TRP_2

Interpro

IPR013555   TRP_dom        + More
IPR002153   TRPC_channel
IPR002110   Ankyrin_rpt
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR005821   Ion_trans_dom

SUPFAM

SSF48403 SSF48403

Gene 3D

1.25.40.20

CDD

cd00204 ANK

ProteinModelPortal

A0A194QE60 A0A0N0PAX6 A0A212EYZ9 A0A1B0D084 A0A154P203 A0A182JF62 + More

KEGG

NA

GO

GO:0016021 GO:0005262

PANTHER

PTHR10117

Length:

81

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.76327

Exp number, first 60 AAs:

22.76327

Total prob of N-in:

0.04881

POSSIBLE N-term signal

sequence

outside

1 - 14

TMhelix

15 - 37

inside

38 - 81

Pi

175.283687

Theta

194.988906

Tajima's D

-2.216743

CLR

108.188764

CSRT

0.0047997600119994

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics