SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05035  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012532
Annotation
PREDICTED:_26S_proteasome_non-ATPase_regulatory_subunit_5-like_isoform_X2_[Bombyx_mori]
Full name
26S proteasome non-ATPase regulatory subunit 5      
Alternative Name
26S protease subunit S5 basic
26S proteasome subunit S5B
Location in the cell
PlasmaMembrane   Reliability : 2.716
 

Sequence

CDS
ATGGATGCTGAAGTTGCAGAACAGCTTAGAGATCTAATTACTAGATTACAAACTGATGAAGACATACCAAGTGCTATGAATCAGCTTAAAACGTTATTAGTTTCCGCACCAACTGAAATTTCTGAAACTATCCTAGAGGTAGGATTATCCAAAATACTCCAATGCTTCAACATTTTTGATAGACACCTAGTTGATTTAATATGTGAAGTGCTCACACTGTGTTTTGAAAAATTTTCACCTGGAGAAGTGATTAAGAGTTTTACAGGTAACTTCATGTATTTGCTACGACATGAAAATGCACATGTTCGTAGACTTGCTGTAGATGAGATTGCTAAAGCAGTGATATCAAGCTCCAATGCCCTCCCAATACCACAGTATATTGATGTGTATGTAGCTGTTGGTCAGCTTGTTGGTGATAATGATATAGGCGTTGCTAACAAAGCTATATTGATTACATCAAATTTGCCAGAAGAGGCTTATACAAAAGTTTTGGAAGAAATGAAAATTCTTTTAAAATGTTCTTCTAGTAGCAAATGTAATGTTTTTGAGGTGATAATTAACATTTCCATTAAATCTTATGATTTGTTCAAAATTTGTCTTGAGCTGGGTTACATAGATATCATGGTGCAAGAAATCCAATCTCTTGATGTACTGTACCAATTAAATATTTTGGAACTCATGTCAACCTTGGCAATCAAACCATACGGTATTAATTACCTACTCAATAGTGGAGCAATGGATAAATTGGTAACAGTTGTTATTGACTTGAAAACTTCACCTGTTGGTGGAATATTGATACCAGGTTACATGAAATTATTTGGATGTATTGCTCATTATTTTCCTAAGGAGATTATTGAAAAATATCCGATATTGTTAAATTTTCTTTTTGGATTATTTGAATCTGGAAAACAAGCAGTACTACCAGTCGCTTTGGACACGTTTGGTTTTGTGGGCTCTACTACTGAAGGAAAATTATCTCTAGTGGCCTCAGGGGGTAAATTTACAGAAACTATGATGAAGGTAAATCTCTTAATAAAAAACAGTTCAAGTGATATTAAGATTCGTGCTTTAAATTGCCTTACTAACTTAATAAGTATCGAAAAGGACACCAACACGGCCAATTCTAAGCCTGTTGATCATAGAGTAACTCTAATTACGAGGGAGTGGTTCAGAGGCTTAAGTGAACAGCCATCTTCAATGGATTTATTGTTTGATATATGCAAAAACCCATTTCCTGACATTAGACTAGCAGCCTTTGGCTTACTTGATGCTGTAAGTCAGCACCAGTGGGGACACGAACTAATCGCAAGAACTGCAGGCTTCATTGAATACTTACTAGACCGTTCTGTAGATTTTACAAAAGAATGTAAAGAGGCAAAATACGACATCATTAAAAGATTATCAAACTCTGAAGTGTTTGATTCAAATATAACTTCCAGGCTACAGGCTTATGTAGAGGAAGGACCGTTCTATTGTAACAGAATGTTGGAAGTGGCTATGGAAGATGCTGATTAG
Protein
MDAEVAEQLRDLITRLQTDEDIPSAMNQLKTLLVSAPTEISETILEVGLSKILQCFNIFDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSSNALPIPQYIDVYVAVGQLVGDNDIGVANKAILITSNLPEEAYTKVLEEMKILLKCSSSSKCNVFEVIINISIKSYDLFKICLELGYIDIMVQEIQSLDVLYQLNILELMSTLAIKPYGINYLLNSGAMDKLVTVVIDLKTSPVGGILIPGYMKLFGCIAHYFPKEIIEKYPILLNFLFGLFESGKQAVLPVALDTFGFVGSTTEGKLSLVASGGKFTETMMKVNLLIKNSSSDIKIRALNCLTNLISIEKDTNTANSKPVDHRVTLITREWFRGLSEQPSSMDLLFDICKNPFPDIRLAAFGLLDAVSQHQWGHELIARTAGFIEYLLDRSVDFTKECKEAKYDIIKRLSNSEVFDSNITSRLQAYVEEGPFYCNRMLEVAMEDAD

Summary

Description
Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). In the initial step of the base subcomplex assembly is part of an intermediate PSMD5:PSMC2:PSMC1:PSMD2 module which probably assembles with a PSMD10:PSMC4:PSMC5:PAAF1 module followed by dissociation of PSMD5 (By similarity).
Subunit
Interacts with PSMC1, PSMC2, PSMD1 and PSMD6. Part of transient complex containing PSMD5, PSMC2, PSMC1 and PSMD2 formed during the assembly of the 26S proteasome (By similarity).
Interacts with PSMC1, PSMC2, PSMD1 and PSMD6. Part of transient complex containing PSMD5, PSMC2, PSMC1 and PSMD2 formed during the assembly of the 26S proteasome.
Similarity
Belongs to the proteasome subunit S5B/HSM3 family.
Keywords
Acetylation   Chaperone   Complete proteome   Reference proteome  
Feature
chain  26S proteasome non-ATPase regulatory subunit 5
EMBL
BABH01032184    BABH01032185    ODYU01010043    SOQ54869.1    RSAL01000007    RVE54077.1    + More
AGBW02011400    OWR46714.1    KQ461133    KPJ08887.1    KQ459144    KPJ03716.1    GAIX01003646    JAA88914.1    NNAY01002149    OXU21934.1    BT126642    AEE61605.1    APGK01021777    KB740363    KB631964    ENN80807.1    ERL87508.1    GL446605    EFN87521.1    GL441034    EFN65167.1    KQ976885    KYN07513.1    KQ434923    KZC11496.1    ADTU01029569    GEZM01011664    JAV93474.1    KQ982021    KYN30583.1    KQ976419    KYM89272.1    KQ980824    KYN12520.1    KQ435712    KOX79363.1    KK107154    QOIP01000001    EZA56838.1    RLU27076.1    KZ288256    PBC30609.1    GL888199    EGI65296.1    KQ982335    KYQ57543.1    LJIG01001401    KRT85539.1    KQ760132    OAD61807.1    LBMM01004227    KMQ92678.1    CH477723    EAT36893.1    NEVH01011893    PNF31217.1    AERX01026606    KK853274    KDR09104.1    AAMC01043170    BC161160    KV460362    AAI61160.1    OCA19904.1    JH431939    KQ971380    EEZ97564.1    AAGJ04163988    CH477974    EAT34688.1    GBYB01003601    GBYB01003603    GBYB01003604    JAG73368.1    JAG73370.1    JAG73371.1    CM004480    OCT67060.1    JXUM01092116    KQ563964    KXJ73008.1    BC088711    AAH88711.1    JH880525    ELR60898.1    PZQS01000011    PVD22222.1    GDIQ01096192    JAL55534.1    ACTA01146461    ACTA01154460    ACTA01162459    GL192453    EFB13301.1    AEMK02000005    DQIR01167027    DQIR01189252    HDB22504.1    GDIP01246056    JAI77345.1    AEYP01087127    AEYP01087128    AEYP01087129    BC120300    GBYX01209988    JAO76467.1    LSYS01008925    OPJ67644.1    KB030911    ELK08212.1    HAAF01009776    CCP81600.1    AK032992    AK078419    AK145587    AK148284    AL929068    CH466542    BC019112    AK220321    AANG04004382    JP016291    AES04889.1    KK500860    KFP11145.1    KL873508    KGL99096.1    KL217089    KFV73403.1    AMGL01046804    EAAA01002998    AYCK01014206    AYCK01014207    HADW01015446    HADX01006353    SBP16846.1    AAKN02005198    KK751779    KFP42032.1    GDIQ01028754    JAN65983.1    UFQT01000320    SSX23206.1    KB743801    EOA97047.1   
Pfam
PF10508   Proteasom_PSMB        + More
PF12171   zf-C2H2_jaz
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR019538   PSMD5       
IPR016024   ARM-type_fold       
IPR011989   ARM-like       
IPR022755   Znf_C2H2_jaz       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
SUPFAM
SSF48371   SSF48371        + More
SSF57667   SSF57667       
Gene 3D

Ontologies

Topology

Length:
504
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.20648
Exp number, first 60 AAs:
0.00061
Total prob of N-in:
0.00682
outside
1  -  504
 
 

Population Genetic Test Statistics

Pi
221.467769
Theta
170.047911
Tajima's D
0.702553
CLR
1.913306
CSRT
0.574671266436678
Interpretation
Uncertain
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