SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05030
Pre Gene Modal
BGIBMGA002369
Annotation
Uncharacterized_protein_OBRU01_18869?_partial_[Operophtera_brumata]
Location in the cell
Extracellular   Reliability : 2.452
 

Sequence

CDS
ATGGCATCTTCAAAAAGTTCTCCTGGCGAATTCACGTCGGCCGCTGTGTGCGGCGGTTGCGCCATGTCATTCTGCGGATATAAACGCCTACTTGAACATCTATACTGGCGTCACGGTACAGAAAGCGTTTGGTGTACTAGTTGCGGAATAAAAAAATGGTTGTTCGCAATGCACGTATGTCACGTTCTTCCCATCACTGAAGACTATGAGCCTGAAGAGCAGTCACAATACAGCCCCAAAAGGGAATCGGAGTACTGTTATTGTGGAAAATTCATATCCGAATCTAGAATGATTGGTTGTGACGAACCGAAATGCAGCTTCCAGTGGTATCATTTTCAGTGTGTCGGAATTAAAGTTCCTCCGCCAGGAAATTGGTTTTGCCCTGAATGTATCAAATTGCGAAGAAAAAAGAGAAGGCGACCTGAATTCCTGAGTGAACACAAATGGGGTCATGTGAATCTGTGA
Protein
MASSKSSPGEFTSAAVCGGCAMSFCGYKRLLEHLYWRHGTESVWCTSCGIKKWLFAMHVCHVLPITEDYEPEEQSQYSPKRESEYCYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPPGNWFCPECIKLRRKKRRRPEFLSEHKWGHVNL

Summary

Pfam
PF00628   PHD
Interpro
IPR019787   Znf_PHD-finger        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR011011   Znf_FYVE_PHD       
IPR028651   ING_fam       
IPR013087   Znf_C2H2_type       
IPR019786   Zinc_finger_PHD-type_CS       
SUPFAM
SSF57903   SSF57903       
Gene 3D
PDB
2M1R     E-value=9.56617e-11,     Score=155

Ontologies

Topology

Length:
154
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.28647
Exp number, first 60 AAs:
1.27854
Total prob of N-in:
0.07606
outside
1  -  154
 
 

Population Genetic Test Statistics

Pi
250.68851
Theta
174.987144
Tajima's D
1.276122
CLR
0.44817
CSRT
0.735763211839408
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号