SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05029
Pre Gene Modal
BGIBMGA012529
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_toll-like_receptor_8_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.784
 

Sequence

CDS
ATGGATATTATCACACGACTTTCCCGCTTCAAATATGGCGCCTACGTCCTTTTGGTCATCATCCATATTCCGATACTGCAAGGAGAAGAACAATCGCAATGTCCAAGTCTGTCAGAAAATCCGATTTGTCCTTGTTACAATTTTAAGGAAGGTCTTTTTCTGGAATGTCCGAGTGCCTCTCCTGGTGTTGTGAAAAATGTGTTATCAAAAATAAAAGGAACAATACAATCTTTATCGATTTACGATTTGGAGAGTTCGACCACTGAACTGAAAGCAGAACTTTTCCCGCCTAAAATAAAAATTTCGAATTTACAAATCTCCCAATCAAACATAGATAAAGGTAATCGTTTAACTACAATTGGCGATGTATTCCCAAACAGAAATTCATCTTTAGTTTCAATTCAGCTCGGGGCGAATTCTTTATCATTGTTGAAAAATAGCTCTCTTCGAGGACAAGTTAACGTTCAAATAATGTGGCTGAGCCAAAATAATATCAATATGTTAACTTCGAATCTTTTTGATGATTTGTTAAATATACAGAGGCTGTACCTTAAAAATAATAGTATTATACATATAGAAAGGGCATTTTCAAAACTGCACAACTTGGAGTTCCTCGATTTGAGTCAAAATAAATTAGAAAATGTCCCTCGAGAAAGGCTTCAGGGGTTATATTCAACACGGCTACTAAACATCTCCCAGAACATTATAAGGGAGCTAGAAGAATTCACCGCAGATTTGCAAAGCCTACAAAAAATTGACTTATCCTATAACCACATTACAAGAATTCATAGAGAAATATTTCATCGGCTACATAATCTTGTGGAGTTGAACTTAAGTGGAAATTGGCTATCAGCTATTTCTACAGATGCTTTTAAACATATGCACAAAATATCTGTTATAGACTTGAGTCATAATTACTTCGAAACAATTCAAATAAAAATGTTAACTTCATTGGAGTCTCAGATTAAAGCATTATCATTAGATGAGAATCCTTTCACATGCAATTGTGAATCACAGGATGTCTGGCGGTGGATGCAAGATCACTATAAAATTATTATTAAAGGAAGCTACAATTTGCGATGTGAACATCCAGAAGATATACACGGGTATAGGTTCCTCGAGCTTCCACATCAGAAATTATGCGATGTACCAATTGTAATTCGTATTGCAATTCAAGACATTCAAACATATTCTGTTGTCGTTTCTTGGCAAAGTCGAAATCAAACCGGCTTGAACGGATTTCAAGTGGCTTATTTCCCCGAGGAGAATCCTGGCGCTATACGAGGTAAGACGATAGGTGCCGGAATGAGATCTACAAGGTTAAATCATTTAACGCCAGGATCAAGGTACATTATTTGCGTATTAGCTTACGGGAATTTCAGTCCTACAACATCATTAGACTCCTCGGTCCCAGATGCCAGGGTAGCGCCGTCACCCGCTAACAAAAACAGCATATACGGAGATGAACAAATAATGAATCATCTAAAATCTTATATGAATGATTCCATGACTAGTAAGTGTACAAGTGTTAGCACTATTGAAATATTCGGTGCAGCTATTGACAGCCCATTTTCTAATACATATATGGGCATCGCTGATATTCTGACCAGGAGACTCAGTTTAGTAGTCGGTTGCTGCATTGGATTTATCGTGTTCGTCGTTTTGGTATCAGCATTAGGTTACATCAAAAGTAAAAAGCGTCAAGTGATTGCGAAAAGTGAATCTCAACAGCCCCCACAATATATTTCGTATGACAACTTCAATACTCCAAGTGTAGAAGTTCAAACAACAGATATGGATATAAATACTATTACGGACAAAACGAAGTCTCAATGCAAGCATGAGTGA
Protein
MDIITRLSRFKYGAYVLLVIIHIPILQGEEQSQCPSLSENPICPCYNFKEGLFLECPSASPGVVKNVLSKIKGTIQSLSIYDLESSTTELKAELFPPKIKISNLQISQSNIDKGNRLTTIGDVFPNRNSSLVSIQLGANSLSLLKNSSLRGQVNVQIMWLSQNNINMLTSNLFDDLLNIQRLYLKNNSIIHIERAFSKLHNLEFLDLSQNKLENVPRERLQGLYSTRLLNISQNIIRELEEFTADLQSLQKIDLSYNHITRIHREIFHRLHNLVELNLSGNWLSAISTDAFKHMHKISVIDLSHNYFETIQIKMLTSLESQIKALSLDENPFTCNCESQDVWRWMQDHYKIIIKGSYNLRCEHPEDIHGYRFLELPHQKLCDVPIVIRIAIQDIQTYSVVVSWQSRNQTGLNGFQVAYFPEENPGAIRGKTIGAGMRSTRLNHLTPGSRYIICVLAYGNFSPTTSLDSSVPDARVAPSPANKNSIYGDEQIMNHLKSYMNDSMTSKCTSVSTIEIFGAAIDSPFSNTYMGIADILTRRLSLVVGCCIGFIVFVVLVSALGYIKSKKRQVIAKSESQQPPQYISYDNFNTPSVEVQTTDMDINTITDKTKSQCKHE

Summary

EMBL
NWSH01004405    PCG65157.1    ODYU01011706    SOQ57616.1    RSAL01000217    RVE44103.1    + More
JTDY01008523    KOB64533.1    KQ461133    KPJ08895.1    NEVH01019373    PNF22712.1    KQ971312    KYB29176.1    EEZ99221.1    KK852874    KDR14538.1    KQ983238    KYQ46296.1    KQ980731    KYN13972.1    GL888609    EGI59090.1    ADTU01000243    ADTU01000244    AAZX01000454    PYGN01020773    PSN28966.1    KK107193    EZA55703.1    QOIP01000002    RLU26071.1    KQ981606    KYN39624.1    KQ414590    KOC70309.1    JXUM01131322    JXUM01131323    KQ567697    KXJ69314.1    GFXV01003276    GFXV01004122    GFXV01007411    GFXV01007491    MBW15081.1    MBW15927.1    MBW19216.1    MBW19296.1    AAZX01008445    GL441581    EFN64567.1    KB632314    ERL92193.1    APCN01001389    GL446759    EFN87284.1    AXCM01003610    AXCN02001398    GL888102    EGI67566.1    KYQ46304.1    KQ979388    KYN21757.1    KQ976509    KYM82638.1    KYM82630.1    ADTU01000178    DS231932    EDS27483.1    KK107017    EZA62828.1    RLU25539.1    LBMM01000339    KMR00321.1    KQ435753    KOX76128.1    GL763289    EFZ19953.1    GBYB01010917    GBYB01010918    JAG80684.1    JAG80685.1    ACPB03020071    KQ978350    KYM94655.1    LBMM01004009    KMQ92904.1    KQ434829    KZC07719.1    ATLV01012462    KE524793    KFB36832.1    AJVK01002906    AJVK01002907    KYM94662.1    KZ288186    PBC34824.1    GBYB01000383    JAG70150.1    EFN64559.1    KYN39631.1    ABLF02027459    ABLF02027460    CVRI01000063    CRL04742.1    GGMS01010937    MBY80140.1    GGMR01012002    MBY24621.1    ADMH02000273    ETN67161.1    BT029028    ABJ16961.1    CM000162    EDX03150.2    KRK07151.1    KRK07152.1    KOX76118.1    CM000366    EDX18574.1    CH480854    EDW51655.1   
Pfam
PF00041   fn3        + More
PF13855   LRR_8
PF13306   LRR_5
PF12799   LRR_4
PF00560   LRR_1
PF13516   LRR_6
Interpro
IPR013783   Ig-like_fold        + More
IPR000483   Cys-rich_flank_reg_C       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR026906   LRR_5       
IPR025875   Leu-rich_rpt_4       
SUPFAM
SSF49265   SSF49265       
Gene 3D
PDB
4OQT     E-value=3.57912e-16,     Score=209

Ontologies

Topology

SignalP
Position:   1 - 28,         Likelihood:  0.863677
 
 
Length:
615
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
27.96293
Exp number, first 60 AAs:
5.02905
Total prob of N-in:
0.27167
outside
1  -  539
TMhelix
540  -  562
inside
563  -  615
 
 

Population Genetic Test Statistics

Pi
218.283889
Theta
182.467068
Tajima's D
0.70238
CLR
0.270717
CSRT
0.577571121443928
Interpretation
Uncertain
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