Gene

KWMTBOMO05028

Pre Gene Modal

BGIBMGA012573

Annotation

PREDICTED:_chaoptin-like_[Bombyx_mori]

Location

Bomo_Chr9(-):5885802-5891587      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.905

CDS

ATGAAAAAAATTATATGCCCGAAGACAAGGAAAAATGACGGCGATGTTTTGCAAATTATTCCGTTATTACTGTTTCTACCCTCCATTCTGCGAGCTCAAAATACCTTGGAATGTCCCGACTTGACAAGAACTAATAAATGTTCTTGTAACGTATTCGAAGACGGATTGTCTCTGGATTGCCAATATACAGACTTAAGAGACGTAAAAAATGCACTTAAAACTGTGACTGATGTTCATTCATTGTCTGTTTACGACCTCGACGACAACGAAAATGCTTTAAATTTGAACAAAATCATTCAAATTAATTTAGAATACAATAAGCTGCAAATTGTACCCTTGGAGTTGCTTACTTCAGTTGAAAACCACATTGAAGAAATAGCTATAAAAGGTAATGTGATAATATGCAACTGTCAAAAAGATAATACATGGGTGTGGATACAAGATCATCCTAAAATTATAAAATCAAATTCAGTGACATGTCTTAATAATGAATATCCGAAGGAGAAATGTGATCTACCAGTGATATCCCAACTATCAGTAGATAAACACAAAGATAACTCGGTTTCCGTTTCATGGTTTATTCGTAATCGGACAGCTATTAAAGCAATACAGATATTGTATTATGGAGAAGAAGCTACGGCTCATATCAACTCCAAATATTTGGAAAAAAACGACGTATCTGTACGGATTACAAATTTAGAACCAAACGTTAACTACATTGTATGTGTCATTACGTTATCAGAAAATCCCGTTAACTATGAAGACAATAAAAATTCAGATAATAATTTAACATTAACAGAAGATTTAATAAACGTCACTGCCCAAATTAGTCAAGATATAGCCGCCGCAATATTGATGCGATCACCATCCAGTGAATGTATTTCATTTAATACCTTTAGAAAACAGGCTTCTATTAAATTGAAAACAAACAAAAAACTCGGCTTGGCATCCATCTTAAATCGTAGATTAGGTTTAATCGTTGGTTGTACATTGGGGTTTGTAGTCTTTTTTATCATGGTATCGGTTTTGTTGTATACTAAAATTAAAGAGCGGAAGAGAATAGCGAAATCTGATCCGGCTTGGTCAGAAATGAACGACTATCATTCAATGGCAAGCAAGGATGATATTTTACAGAATTCTACGACTGCTTCCACTGATAACATTTTATTAGGGATGGCAAAGCCGCGTTAA

Protein

MKKIICPKTRKNDGDVLQIIPLLLFLPSILRAQNTLECPDLTRTNKCSCNVFEDGLSLDCQYTDLRDVKNALKTVTDVHSLSVYDLDDNENALNLNKIIQINLEYNKLQIVPLELLTSVENHIEEIAIKGNVIICNCQKDNTWVWIQDHPKIIKSNSVTCLNNEYPKEKCDLPVISQLSVDKHKDNSVSVSWFIRNRTAIKAIQILYYGEEATAHINSKYLEKNDVSVRITNLEPNVNYIVCVITLSENPVNYEDNKNSDNNLTLTEDLINVTAQISQDIAAAILMRSPSSECISFNTFRKQASIKLKTNKKLGLASILNRRLGLIVGCTLGFVVFFIMVSVLLYTKIKERKRIAKSDPAWSEMNDYHSMASKDDILQNSTTASTDNILLGMAKPR

Uniprot

H9JSR2   A0A2H1WSX7   A0A0L7L1N6   A0A212F3L5   A0A0N1INN9   A0A194QE20   + More
A0A2A4IYZ0   A0A1W4X7P6   A0A0N1PFN8   A0A182V7C2   U4UII3   A0A182IAZ4   A0A2H1WXC0   A0A084VFT8   A0A182SN70   A0A1J1IZZ4   A0A0C9PHN7   A0A182PBH4   A0A0L7KML4   A0A182JMC3   A0A182MPR5   A0A182R282   W5JSP3   A0A182Q339   A0A182W658   A0A3S2N878   A0A182YF08   A0A182FIM6   B0WH32   A0A182N0Q5   A0A0N1ITQ9   A0A151IYZ8   A0A151WEP6   E2BAJ0   A0A067QYH8   F4X3A9   A0A0C9RCR5   A0A2J7Q2A1   A0A195FI09   E2APU1   A0A154P712   A0A088AS96   A0A158NEJ6   K7J4W0   A0A026X402   T1HEM2   A0A182HEB3   K7J4W3   E9IHM6   A0A026WIB3   A0A3L8E027   A0A0L7RHL2   A0A0J7P243   J9K8S1   A0A2H8TP25   A0A2S2P545   A0A151WEM2   F4WEC8   A0A195BEP1   A0A151J9Q9   A0A158NDY6   A0A2P8XAD9   A0A195C1E2   A0A195BDK3   A0A195C217   A0A2S2QRI2   E2APT3   A0A2A3ETJ9   A0A0J7KRN9   A0A195FGY5   B3MYK0   A0A088AS51   B4IKP1   A0A154P7B5   A0A0N0BHE4   B4PZM2   B4MST1   B4R452  

Pubmed

19121390    26227816    22118469    26354079    23537049    24438588    + More
20920257    23761445    25244985    20798317    24845553    21719571    21347285    20075255    24508170    30249741    26483478    21282665    29403074    17994087    17550304   

EMBL

BABH01032231    ODYU01010768    SOQ56082.1    JTDY01003527    KOB69397.1    AGBW02010554    + More
OWR48325.1    KQ461133    KPJ08896.1    KQ459144    KPJ03722.1    NWSH01004405    PCG65157.1    KPJ08895.1    KB632314    ERL92193.1    APCN01001389    ODYU01011706    SOQ57616.1    ATLV01012462    KE524793    KFB36832.1    CVRI01000063    CRL04742.1    GBYB01000383    JAG70150.1    JTDY01008523    KOB64533.1    AXCM01003610    ADMH02000273    ETN67161.1    AXCN02001398    RSAL01000217    RVE44103.1    DS231932    EDS27483.1    KQ435753    KOX76128.1    KQ980731    KYN13972.1    KQ983238    KYQ46296.1    GL446759    EFN87284.1    KK852874    KDR14538.1    GL888609    EGI59090.1    GBYB01010917    GBYB01010918    JAG80684.1    JAG80685.1    NEVH01019373    PNF22712.1    KQ981606    KYN39624.1    GL441581    EFN64567.1    KQ434829    KZC07719.1    ADTU01000243    ADTU01000244    AAZX01008445    KK107017    QOIP01000002    EZA62828.1    RLU25539.1    ACPB03020071    JXUM01131322    JXUM01131323    KQ567697    KXJ69314.1    AAZX01000454    GL763289    EFZ19953.1    KK107193    EZA55703.1    RLU26071.1    KQ414590    KOC70309.1    LBMM01000339    KMR00321.1    ABLF02027459    ABLF02027460    GFXV01003276    GFXV01004122    GFXV01007411    GFXV01007491    MBW15081.1    MBW15927.1    MBW19216.1    MBW19296.1    GGMR01012002    MBY24621.1    KYQ46304.1    GL888102    EGI67566.1    KQ976509    KYM82630.1    KQ979388    KYN21757.1    ADTU01000178    PYGN01020773    PSN28966.1    KQ978350    KYM94662.1    KYM82638.1    KYM94655.1    GGMS01010937    MBY80140.1    EFN64559.1    KZ288186    PBC34824.1    LBMM01004009    KMQ92904.1    KYN39631.1    CH902632    EDV32694.2    CH480854    EDW51655.1    KZC07723.1    KOX76118.1    CM000162    EDX03150.2    KRK07151.1    KRK07152.1    CH963851    EDW75170.2    CM000366    EDX18574.1   

Proteomes

UP000005204    UP000037510    UP000007151    UP000053240    UP000053268    UP000218220    + More
UP000192223    UP000075903    UP000030742    UP000075840    UP000030765    UP000075901    UP000183832    UP000075885    UP000075880    UP000075883    UP000075900    UP000000673    UP000075886    UP000075920    UP000283053    UP000076408    UP000069272    UP000002320    UP000075884    UP000053105    UP000078492    UP000075809    UP000008237    UP000027135    UP000007755    UP000235965    UP000078541    UP000000311    UP000076502    UP000005203    UP000005205    UP000002358    UP000053097    UP000279307    UP000015103    UP000069940    UP000249989    UP000053825    UP000036403    UP000007819    UP000078540    UP000245037    UP000078542    UP000242457    UP000007801    UP000001292    UP000002282    UP000007798    UP000000304   

PRIDE

H9JSR2   

Pfam

PF00041   fn3        + More
PF13855   LRR_8
PF13306   LRR_5
PF12799   LRR_4
PF00560   LRR_1
PF13516   LRR_6

Interpro

IPR032675   LRR_dom_sf        + More
IPR036116   FN3_sf       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR026906   LRR_5       
IPR000483   Cys-rich_flank_reg_C       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF49265   SSF49265       

Gene 3D

2.60.40.10     3.80.10.10    

CDD

cd00063  FN3

ProteinModelPortal

H9JSR2   A0A2H1WSX7   A0A0L7L1N6   A0A212F3L5   A0A0N1INN9   A0A194QE20   + More
A0A2A4IYZ0   A0A1W4X7P6   A0A0N1PFN8   A0A182V7C2   U4UII3   A0A182IAZ4   A0A2H1WXC0   A0A084VFT8   A0A182SN70   A0A1J1IZZ4   A0A0C9PHN7   A0A182PBH4   A0A0L7KML4   A0A182JMC3   A0A182MPR5   A0A182R282   W5JSP3   A0A182Q339   A0A182W658   A0A3S2N878   A0A182YF08   A0A182FIM6   B0WH32   A0A182N0Q5   A0A0N1ITQ9   A0A151IYZ8   A0A151WEP6   E2BAJ0   A0A067QYH8   F4X3A9   A0A0C9RCR5   A0A2J7Q2A1   A0A195FI09   E2APU1   A0A154P712   A0A088AS96   A0A158NEJ6   K7J4W0   A0A026X402   T1HEM2   A0A182HEB3   K7J4W3   E9IHM6   A0A026WIB3   A0A3L8E027   A0A0L7RHL2   A0A0J7P243   J9K8S1   A0A2H8TP25   A0A2S2P545   A0A151WEM2   F4WEC8   A0A195BEP1   A0A151J9Q9   A0A158NDY6   A0A2P8XAD9   A0A195C1E2   A0A195BDK3   A0A195C217   A0A2S2QRI2   E2APT3   A0A2A3ETJ9   A0A0J7KRN9   A0A195FGY5   B3MYK0   A0A088AS51   B4IKP1   A0A154P7B5   A0A0N0BHE4   B4PZM2   B4MST1   B4R452  

KEGG

101742972    no KO assigned | (RefSeq) chaoptin-like

GO

GO:0016021   GO:0005515   GO:0008483   GO:0030170   GO:0000387   GO:0000398   GO:0005685   GO:0003677   GO:0016742   GO:0003824  

SignalP

Position:   1 - 32,         Likelihood:  0.734917

 

 

Length:

396

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.08476

Exp number, first 60 AAs:

0.18629

Total prob of N-in:

0.02486

outside

1  -  322

TMhelix

323  -  345

inside

346  -  396

 

 

Pi

20.400941

Theta

189.175435

Tajima's D

0.589418

CLR

1.299425

CSRT

0.535423228838558

Interpretation

Uncertain