Gene

KWMTBOMO05026

Pre Gene Modal

BGIBMGA012574

Annotation

PREDICTED:_retinol_dehydrogenase_11-like_[Bombyx_mori]

Location

Bomo_Chr9(-):5793976-5795067      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.812

CDS

ATGGTTTTCATTAGTTTTATTGTGTTGAATCTCATATTAGCGTTACTTTATATAACGTATTGTAAATTAACATACGGTATAAATAAATGCAGCAGGCATTTGGTCGGTAAAGTGGTGATAGTGACCGGAAGCAGCAGCGGTATAGGATACGAGACGGCAAAAGACTTAGCGGAGCGTGGAGCCAGGGTAATACTCGCTTGCATAAATGATCTACACGGTAACAAGGCCAGAGACCAGATCATTTCAGAATCCGGGAACCAGGATGTGCATTATCGTCAGCTGGATTTAGCGTCCTTTGATTCTGTTAGAAGATTCGCTGAAGAATTCATTAAAACCGAAAAGCGTTTAGACATTCTTATCAACAATGCTGGAGTACTCGTCGTGGACAATGTAAAGACGGAAAACGGCTTGTTTGTCGGTATGCAAACAAATCACTTCGGGCCATTTCTGCTCACGAAGCTTCTTCTTCCGCTAATTAAATCGTCAGCTCCGAGTCGCATCATCAACGTTACGTCCATAGCCTACTCAAAAGGAATTATTGATTTTAATAATTTAAATTTGGAAAAAGAAACGCCGCAGTCATACAGTAAAATGCAAGCATATAAAAACAGCAAGCTGTGTAATGTTCTAATGACCACTGAGTTGGCGAGACGGCTTGAAGGTACTGGAGTGACTGCTAATTGCTTACATCCCGGCGTAGTAAAAACTGAAATTGTAAATTATGATAAACTGCCATTTTCGAAGTACTGGGTTCCTATCGCAAGTTTATTTGTTAAGACCCCTCGGGAAGGGGCCCAGACTTCAATATACCTGGCGGTGTCTCCTGAGGTAGAAAACGTAACTGGCTGCTATTTCGCCGATTGTCAGGTTAAAACTTTAAGCAAAACGGGGCGTAATACTGAACTGGCTCGTCGTCTCTGGGAAGAGTCTGAAAAAATAATTGCGAAGAAATGA

Protein

MVFISFIVLNLILALLYITYCKLTYGINKCSRHLVGKVVIVTGSSSGIGYETAKDLAERGARVILACINDLHGNKARDQIISESGNQDVHYRQLDLASFDSVRRFAEEFIKTEKRLDILINNAGVLVVDNVKTENGLFVGMQTNHFGPFLLTKLLLPLIKSSAPSRIINVTSIAYSKGIIDFNNLNLEKETPQSYSKMQAYKNSKLCNVLMTTELARRLEGTGVTANCLHPGVVKTEIVNYDKLPFSKYWVPIASLFVKTPREGAQTSIYLAVSPEVENVTGCYFADCQVKTLSKTGRNTELARRLWEESEKIIAKK

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JSR3   A0A2A4IXN8   A0A2H1W6X7   A0A0L7KV18   I4DQA1   A0A0N0PAY2   + More
A0A0N1ICN4   A0A0N0PB70   A0A0N0PAC1   A0A1Q3G5H8   A0A0N1IDL3   A0A0L7KVJ8   A0A2H1W7C7   A0A2A4ITG8   A0A0N0PAN9   A0A1Q3G5G7   A0A0N0PAY1   A0A212F5B7   D6X0B0   A0A3Q2UEG4   H9JSL6   A0A3Q2DGZ5   A0A1Y1N8N2   A0A2I4D8B2   A0A3B3BDF8   A0A146XYN2   A0A3P8XDV8   A0A147APK5   A0A1Y1NCI4   A0A2J7PGT7   A0A3P8YKM0   A0A2J7PGY1   K7FV47   A0A3P9A7S4   A0A1A8VGE8   W5NAH8   A0A2J7PGT0   A0A0P5UI40   W4ZIF1   A0A3Q1J6H1   A0A0N8E5H6   A0A1L8E4I5   A0A3P9JF09   A0A3P9I0S4   A0A2J7PGU9   A0A3N0XRZ0   A0A1D2MFP1   H2T513   H2N2X4   A0A1L8E4K0   B5UAY9   A0A0N1IF98   A0A1W4Y4S3   A0A3B4UP20   A0A0P5JEC0   A0A2H1VAE5   A0A1W4Y5C8   A0A3Q3MS71   A0A1S3S0C8   V4AKA2   A0A0L7L5N4   A0A2W1BZE1   A0A3Q3MTU9   A0A3B5A1H2   A0A0P5JH40   A0A0Q9WF80   A0A3Q3FY47   A0A0P5YX32   A0A0K8TLB0   A0A0M4EVS0   A0A0P6BK02   A0A218UIJ9   A0A3Q3FW11   A0A0P6APB3   A0A2A4JJH1   A0A0P6GLC1   H9GAK1   A0A060XHT8   A0A3B4WC11   A0A1S3QIK4   B3RKN4   A0A1W4XV20   B4LJG7   E9GHT3   A0A1S3M424   B4KPR0   A0A1S3M3L0   A0A060VRE0   H2Z7K1   A0A3B1JJT4   A0A1S3M363   A0A3B5R452   B0XLA9   B3SEC9   A0A0P5LS57   A0A3Q4MI25   A0A0N0PAB9   A0A210QNT6   A0A023EPL6   A0A0Q9X8T9  

Pubmed

19121390    26227816    22651552    26354079    22118469    18362917    + More
19820115    28004739    29451363    25069045    17381049    17554307    27289101    21551351    23254933    28756777    17994087    26369729    21881562    24755649    18719581    21292972    25329095    23542700    25186727    28812685    24945155   

EMBL

BABH01032245    NWSH01005060    PCG64471.1    ODYU01006737    SOQ48855.1    JTDY01005329    + More
KOB67107.1    AK404009    BAM20091.1    KQ461133    KPJ08901.1    KQ458665    KPJ05597.1    KPJ08899.1    KPJ05598.1    GEYN01000183    JAV44806.1    KPJ08900.1    KOB67106.1    SOQ48856.1    NWSH01008708    PCG62440.1    KPJ05596.1    GEYN01000196    JAV44793.1    KPJ08898.1    AGBW02010210    OWR48927.1    KQ971372    EFA10517.1    BABH01032240    GEZM01009786    JAV94304.1    GCES01039838    JAR46485.1    GCES01005956    JAR80367.1    GEZM01009785    JAV94305.1    NEVH01025161    PNF15542.1    PNF15592.1    AGCU01021282    HAEJ01017786    SBS58243.1    AHAT01005059    PNF15543.1    GDIP01112562    JAL91152.1    AAGJ04078790    GDIQ01059860    JAN34877.1    GFDF01000434    JAV13650.1    PNF15560.1    RJVU01062584    ROJ29328.1    LJIJ01001415    ODM91806.1    GFDF01000433    JAV13651.1    AB439581    BAG72431.1    KPJ08897.1    GDIQ01201309    JAK50416.1    ODYU01001508    SOQ37815.1    KB201701    ESO95165.1    JTDY01002853    KOB70599.1    KZ149935    PZC77183.1    GDIQ01200010    JAK51715.1    CH940648    KRF80052.1    GDIP01052070    JAM51645.1    GDAI01002635    JAI14968.1    CP012524    ALC42025.1    GDIP01013477    LRGB01000243    JAM90238.1    KZS20137.1    MUZQ01000282    OWK53555.1    GDIP01026350    JAM77365.1    NWSH01001250    PCG71979.1    GDIQ01042179    JAN52558.1    AAWZ02022819    FR905416    CDQ79168.1    DS985241    EDV29193.1    EDW61535.1    GL732545    EFX80894.1    CH933808    EDW09170.2    FR904286    CDQ57371.1    DS234386    EDS33797.1    DS985430    EDV18917.1    GDIQ01166025    JAK85700.1    KPJ05595.1    NEDP02002617    OWF50392.1    GAPW01002630    GAPW01002629    JAC10968.1    KRG04501.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000265000    UP000265020    UP000192220    UP000261560    UP000265140    UP000235965    UP000007267    UP000018468    UP000007110    UP000265040    UP000265200    UP000094527    UP000005226    UP000001038    UP000192224    UP000261420    UP000261640    UP000087266    UP000030746    UP000261660    UP000261400    UP000008792    UP000092553    UP000076858    UP000197619    UP000001646    UP000193380    UP000261360    UP000009022    UP000000305    UP000009192    UP000007875    UP000018467    UP000002852    UP000002320    UP000261580    UP000242188   

PRIDE

H9JSR3    H9JSL6   

Pfam

PF00106   adh_short

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JSR3   A0A2A4IXN8   A0A2H1W6X7   A0A0L7KV18   I4DQA1   A0A0N0PAY2   + More
A0A0N1ICN4   A0A0N0PB70   A0A0N0PAC1   A0A1Q3G5H8   A0A0N1IDL3   A0A0L7KVJ8   A0A2H1W7C7   A0A2A4ITG8   A0A0N0PAN9   A0A1Q3G5G7   A0A0N0PAY1   A0A212F5B7   D6X0B0   A0A3Q2UEG4   H9JSL6   A0A3Q2DGZ5   A0A1Y1N8N2   A0A2I4D8B2   A0A3B3BDF8   A0A146XYN2   A0A3P8XDV8   A0A147APK5   A0A1Y1NCI4   A0A2J7PGT7   A0A3P8YKM0   A0A2J7PGY1   K7FV47   A0A3P9A7S4   A0A1A8VGE8   W5NAH8   A0A2J7PGT0   A0A0P5UI40   W4ZIF1   A0A3Q1J6H1   A0A0N8E5H6   A0A1L8E4I5   A0A3P9JF09   A0A3P9I0S4   A0A2J7PGU9   A0A3N0XRZ0   A0A1D2MFP1   H2T513   H2N2X4   A0A1L8E4K0   B5UAY9   A0A0N1IF98   A0A1W4Y4S3   A0A3B4UP20   A0A0P5JEC0   A0A2H1VAE5   A0A1W4Y5C8   A0A3Q3MS71   A0A1S3S0C8   V4AKA2   A0A0L7L5N4   A0A2W1BZE1   A0A3Q3MTU9   A0A3B5A1H2   A0A0P5JH40   A0A0Q9WF80   A0A3Q3FY47   A0A0P5YX32   A0A0K8TLB0   A0A0M4EVS0   A0A0P6BK02   A0A218UIJ9   A0A3Q3FW11   A0A0P6APB3   A0A2A4JJH1   A0A0P6GLC1   H9GAK1   A0A060XHT8   A0A3B4WC11   A0A1S3QIK4   B3RKN4   A0A1W4XV20   B4LJG7   E9GHT3   A0A1S3M424   B4KPR0   A0A1S3M3L0   A0A060VRE0   H2Z7K1   A0A3B1JJT4   A0A1S3M363   A0A3B5R452   B0XLA9   B3SEC9   A0A0P5LS57   A0A3Q4MI25   A0A0N0PAB9   A0A210QNT6   A0A023EPL6   A0A0Q9X8T9  

PDB

3RD5     E-value=5.71088e-26,     Score=291

KEGG

101735502    K11153 retinol dehydrogenase 12 [EC:1.1.1.300] | (RefSeq) retinol dehydrogenase 11-like

PATHWAY

00830    Retinol metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016491   GO:0042574   GO:0005789   GO:0110095   GO:0052650  

SignalP

Position:   1 - 21,         Likelihood:  0.531371

 

 

Length:

317

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.29294

Exp number, first 60 AAs:

21.19245

Total prob of N-in:

0.72243

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  27

outside

28  -  317

 

 

Pi

251.876645

Theta

199.018653

Tajima's D

0.83522

CLR

0.054274

CSRT

0.610619469026549

Interpretation

Uncertain