Gene

KWMTBOMO05025

Pre Gene Modal

BGIBMGA012574

Annotation

PREDICTED:_retinol_dehydrogenase_11-like_[Bombyx_mori]

Location

Bomo_Chr9(-):5785021-5787117      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.028

CDS

ATGTGTAGAACGTATTGTAAATTAACATACGGTATAAATAAATGCAGCAGGCATTTGGTCGGCAAAGTGGTGATAGTGACCGGAAGCAGCAGCGGTATAGGATACGAGACAGCAAAAGACTTAGCGGAGCGTGGAGCCCGGGTAATACTCGCTTGCATAAATGATCTACACGGTAACAAGGCCAGAGACCAGATCATTTCAGAATCCGGGAACCAGGATGTGCATTATCGTCAGCTGGATTTAGCGTCATTTGATTCTGTCAGAAGATTCGCTGAAGAATTCATTAAAACCGAAAATCGTTTAGACATTCTTATCAACAATGCTGGAGTACTCGTCGTGGACAATGTAAAGACGGAAAACGGCTTGTTTGTCGGGAAGTTTTTGGTCATATTAGCAACATAA

Protein

MCRTYCKLTYGINKCSRHLVGKVVIVTGSSSGIGYETAKDLAERGARVILACINDLHGNKARDQIISESGNQDVHYRQLDLASFDSVRRFAEEFIKTENRLDILINNAGVLVVDNVKTENGLFVGKFLVILAT

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JSR3   A0A0N0PAY2   I4DQA1   A0A0L7KV18   A0A2A4IXN8   A0A0N1ICN4   + More
A0A2H1W6X7   A0A0N1IDL3   A0A0N0PAC1   A0A0N0PB70   A0A1Q3G5H8   A0A0L7KVJ8   A0A0N0PAN9   A0A0N0PAY1   H9JSL6   D6X0B0   J3JYB7   A0A2H1W7C7   A0A0P4YWY6   D6X0A9   A0A2A4ITG8   A0A067QHE9   A0A0P5VPG4   A0A0N7ZV61   A0A0N8A5W7   A0A0P5PMK1   A0A0P5LDA0   A0A0P5Y2N8   A0A0P5PN57   A0A0P5JAY1   A0A0P4YEV3   A0A0P5UIG7   A0A0P6DTF7   A0A0P6H517   A0A0P5SYU7   A0A0P5SYT7   A0A0P5UCI1   A0A0P6EQF2   A0A0P5RYQ9   A0A2P8Y2U4   A0A0N8C1B7   A0A0N8AW09   A0A0P5DKJ1   A0A0N8EBT6   A0A0P5P1G4   A0A0P5DRX9   A0A0P5WEV5   A0A0P5DMH4   A0A0P5DVH5   A0A0P5BVD2   A0A0P5UI40   A0A0P6F7P0   A0A0P5YX32   A0A0N8ADL7   A0A0N8E5H6   A0A0P6A2X7   A0A0P5DLU5   A0A0P6A2L5   A0A0P6GLC1   A0A0P6APB3   A0A2H8TYL3   A0A0P5E7P1   J9K599   A0A0P5RHR1   A0A0P6I8P4   A0A0N0PC61   A0A0P5P223   A0A1Q3G5G7   A0A0P5AKI5   A0A0L7L5N4   D6X0A8   A0A2J7PGT7   A0A2J7PGT0   A0A0P5IJ87   A0A139WD13   E9GHT3   A0A2S2QMQ3   A0A369RXT9   A0A0P5JEC0   A0A0P5LS57   A0A2J7PGV7   W4XTV8   A0A2J7PGU9   A0A0P5JH40   A0A0P6CYL0   A0A0P6BK02   A0A369RPK0   A0A0P5XXR0   A0A2H1VAE5   A0A0N8ELP5   N6TCF5   A0A0P5P865   A0A0P6DPX3   H9J6R6   C3XRT1   U4U106   E9GMH1   A0A0N8B1X5   A0A0P6FNI1   A0A0P5WWN1  

Pubmed

19121390    26354079    22651552    26227816    18362917    19820115    + More
22516182    24845553    29403074    21292972    30042472    23537049    18563158   

EMBL

BABH01032245    KQ461133    KPJ08901.1    AK404009    BAM20091.1    JTDY01005329    + More
KOB67107.1    NWSH01005060    PCG64471.1    KQ458665    KPJ05597.1    ODYU01006737    SOQ48855.1    KPJ08900.1    KPJ05598.1    KPJ08899.1    GEYN01000183    JAV44806.1    KOB67106.1    KPJ05596.1    KPJ08898.1    BABH01032240    KQ971372    EFA10517.1    BT128242    AEE63202.1    SOQ48856.1    GDIP01221054    JAJ02348.1    EFA09601.1    NWSH01008708    PCG62440.1    KK853387    KDR07954.1    GDIP01097265    JAM06450.1    GDIP01209449    JAJ13953.1    GDIP01179401    JAJ44001.1    GDIQ01126281    JAL25445.1    GDIQ01171222    JAK80503.1    GDIP01077010    JAM26705.1    GDIQ01126282    JAL25444.1    GDIQ01202170    JAK49555.1    GDIP01232050    JAI91351.1    GDIP01112561    JAL91153.1    GDIQ01083211    JAN11526.1    GDIP01165096    GDIQ01171221    GDIQ01097047    GDIQ01034472    JAJ58306.1    JAN60265.1    GDIP01133509    JAL70205.1    GDIP01133461    JAL70253.1    GDIP01132260    JAL71454.1    GDIQ01059859    JAN34878.1    GDIQ01095302    JAL56424.1    PYGN01001002    PSN38582.1    GDIQ01124523    JAL27203.1    GDIQ01237387    JAK14338.1    GDIP01156056    JAJ67346.1    GDIQ01042180    JAN52557.1    GDIQ01134921    JAL16805.1    GDIP01152203    JAJ71199.1    GDIP01087810    JAM15905.1    GDIP01155148    JAJ68254.1    GDIP01156956    JAJ66446.1    GDIP01179400    JAJ44002.1    GDIP01112562    JAL91152.1    GDIQ01054222    JAN40515.1    GDIP01052070    JAM51645.1    GDIP01157801    JAJ65601.1    GDIQ01059860    JAN34877.1    GDIP01048109    JAM55606.1    GDIP01157800    JAJ65602.1    GDIP01036069    JAM67646.1    GDIQ01042179    JAN52558.1    GDIP01026350    JAM77365.1    GFXV01007598    MBW19403.1    GDIP01145910    JAJ77492.1    ABLF02036064    GDIQ01101358    JAL50368.1    GDIQ01009687    JAN85050.1    KQ460651    KPJ13037.1    GDIQ01134922    JAL16804.1    GEYN01000196    JAV44793.1    GDIP01197631    JAJ25771.1    JTDY01002853    KOB70599.1    EFA09602.1    NEVH01025161    PNF15542.1    PNF15543.1    GDIQ01237438    JAK14287.1    KQ971361    KYB25858.1    GL732545    EFX80894.1    GGMS01009768    MBY78971.1    NOWV01000138    RDD39360.1    GDIQ01201309    JAK50416.1    GDIQ01166025    JAK85700.1    PNF15564.1    AAGJ04137831    PNF15560.1    GDIQ01200010    JAK51715.1    GDIQ01085720    JAN09017.1    GDIP01013477    LRGB01000243    JAM90238.1    KZS20137.1    NOWV01000344    RDD36618.1    GDIP01065715    JAM38000.1    ODYU01001508    SOQ37815.1    GDIQ01014508    JAN80229.1    APGK01035812    KB740928    ENN77984.1    GDIQ01153534    JAK98191.1    GDIQ01073816    JAN20921.1    BABH01038129    GG666456    EEN69399.1    KB631763    ERL85968.1    GL732552    EFX79364.1    GDIQ01220859    JAK30866.1    GDIQ01044935    JAN49802.1    GDIP01080862    JAM22853.1   

Proteomes

UP000005204    UP000053240    UP000037510    UP000218220    UP000053268    UP000007266    + More
UP000027135    UP000245037    UP000007819    UP000235965    UP000000305    UP000253843    UP000007110    UP000076858    UP000019118    UP000001554    UP000030742   

PRIDE

H9JSR3    H9JSL6    H9J6R6   

Pfam

PF00106   adh_short        + More
PF10431   ClpB_D2-small
PF00023   Ank
PF07724   AAA_2
PF12796   Ank_2

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR003593   AAA+_ATPase       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR003959   ATPase_AAA_core       
IPR002110   Ankyrin_rpt       
IPR001270   ClpA/B       
IPR019489   Clp_ATPase_C       
IPR027417   P-loop_NTPase       

SUPFAM

SSF51735   SSF51735        + More
SSF48403   SSF48403       
SSF52540   SSF52540       

Gene 3D

1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

H9JSR3   A0A0N0PAY2   I4DQA1   A0A0L7KV18   A0A2A4IXN8   A0A0N1ICN4   + More
A0A2H1W6X7   A0A0N1IDL3   A0A0N0PAC1   A0A0N0PB70   A0A1Q3G5H8   A0A0L7KVJ8   A0A0N0PAN9   A0A0N0PAY1   H9JSL6   D6X0B0   J3JYB7   A0A2H1W7C7   A0A0P4YWY6   D6X0A9   A0A2A4ITG8   A0A067QHE9   A0A0P5VPG4   A0A0N7ZV61   A0A0N8A5W7   A0A0P5PMK1   A0A0P5LDA0   A0A0P5Y2N8   A0A0P5PN57   A0A0P5JAY1   A0A0P4YEV3   A0A0P5UIG7   A0A0P6DTF7   A0A0P6H517   A0A0P5SYU7   A0A0P5SYT7   A0A0P5UCI1   A0A0P6EQF2   A0A0P5RYQ9   A0A2P8Y2U4   A0A0N8C1B7   A0A0N8AW09   A0A0P5DKJ1   A0A0N8EBT6   A0A0P5P1G4   A0A0P5DRX9   A0A0P5WEV5   A0A0P5DMH4   A0A0P5DVH5   A0A0P5BVD2   A0A0P5UI40   A0A0P6F7P0   A0A0P5YX32   A0A0N8ADL7   A0A0N8E5H6   A0A0P6A2X7   A0A0P5DLU5   A0A0P6A2L5   A0A0P6GLC1   A0A0P6APB3   A0A2H8TYL3   A0A0P5E7P1   J9K599   A0A0P5RHR1   A0A0P6I8P4   A0A0N0PC61   A0A0P5P223   A0A1Q3G5G7   A0A0P5AKI5   A0A0L7L5N4   D6X0A8   A0A2J7PGT7   A0A2J7PGT0   A0A0P5IJ87   A0A139WD13   E9GHT3   A0A2S2QMQ3   A0A369RXT9   A0A0P5JEC0   A0A0P5LS57   A0A2J7PGV7   W4XTV8   A0A2J7PGU9   A0A0P5JH40   A0A0P6CYL0   A0A0P6BK02   A0A369RPK0   A0A0P5XXR0   A0A2H1VAE5   A0A0N8ELP5   N6TCF5   A0A0P5P865   A0A0P6DPX3   H9J6R6   C3XRT1   U4U106   E9GMH1   A0A0N8B1X5   A0A0P6FNI1   A0A0P5WWN1  

PDB

3RD5     E-value=1.07191e-11,     Score=162

KEGG

101735502    K11153 retinol dehydrogenase 12 [EC:1.1.1.300] | (RefSeq) retinol dehydrogenase 11-like

GO

GO:0016021   GO:0016491   GO:0005524  

Length:

133

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23889

Exp number, first 60 AAs:

0.20751

Total prob of N-in:

0.62906

inside

1  -  133

 

 

Pi

170.532458

Theta

160.083631

Tajima's D

-0.540705

CLR

1.492192

CSRT

0.235938203089846

Interpretation

Uncertain