Gene

KWMTBOMO05024

Pre Gene Modal

BGIBMGA012527

Annotation

putative_RDH13_[Operophtera_brumata]

Location

Bomo_Chr9(+):5780908-5781948      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.179 PlasmaMembrane   Reliability : 1.619

CDS

ATGTTTTGGTGGATGGTATTAGCCGTCATTGGAGTTATAGTGCTATTAGTAAAGGTGCATCAAAAACTGACGCTTGGAATATGTAAGTCGAGTGCGCATATGGTGGGTAAAGTAGTTATAGTGACTGGAGGAAACAGTGGCATTGGTTTTGAGACAGCAAAAGACTTGGCTTGTAGAGGTGCACGAGTTATACTAGCTTGTAGAAGTGTCCGCAAAGCTGAAATAGTTAAAGAAGAATTGATTAAAGCTAGTGGTAACACAGATATTATTTGTAAGCAGTTAGATCTTTCATCGCTCGAGTCTGTTAGAAATTTTTGCGAAGATATAGATAAAAACGAAAAACGTTTGGACGTTCTTATTAACAATGCGGGTGCCGGTGGATTAGGCAATTACAAAACGGCGGACGGATTACATGTTGGAATGCAAGTTAATTATTTTGCTCCGTTTTTATTAACGTGCCTTCTGTTGCCACTTCTAAGAAGATCCGAGCCGAGTCGAATTATTAATGTGTCCTCTATGTTGCACAAATACGGAGAACTGGATTTTGAAAATTTGAATATGGAAAAATACTGGAGTGACTATTTAGTATATGCAAATAGTAAATTGTTCTTGAACTTAATGACTTTAGAATTGAGTCGTAGATTGAATGGGTCTAGGGTTACTGTGAACTGCTTACATCCGGGTATAGCTGCTACTAACTTAATGAGAAACGTGCCCAGTGAAATTTTGAAGAAGATAATTTCGAAATCAATAGGCTTTATGTTCCAGAGTGCATGGGAAGCGTCTCAAACTTCTATCTATTTGTCAGTAGCACCAGAAATTCAAGATATTAGTGGAAAATATTTCAGTCATTGCTGTGAAACAAAGCCTTCGAAGCTATCTCTCGATGTTGAAAAAGCAAAAAAGCTTTGGGACGAATCAGAAAAATTAGTGAAGTTCACGATATCAGAAAATTAG

Protein

MFWWMVLAVIGVIVLLVKVHQKLTLGICKSSAHMVGKVVIVTGGNSGIGFETAKDLACRGARVILACRSVRKAEIVKEELIKASGNTDIICKQLDLSSLESVRNFCEDIDKNEKRLDVLINNAGAGGLGNYKTADGLHVGMQVNYFAPFLLTCLLLPLLRRSEPSRIINVSSMLHKYGELDFENLNMEKYWSDYLVYANSKLFLNLMTLELSRRLNGSRVTVNCLHPGIAATNLMRNVPSEILKKIISKSIGFMFQSAWEASQTSIYLSVAPEIQDISGKYFSHCCETKPSKLSLDVEKAKKLWDESEKLVKFTISEN

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JSL6   A0A2H1W7C7   A0A2A4ITG8   A0A0L7KVJ8   A0A0N0PAN9   A0A0N0PAY1   + More
A0A212F5B7   A0A0N1IF98   A0A0N0PAB9   A0A0L7KV18   A0A2A4IXN8   A0A2H1W6X7   A0A2J7PGY1   I4DQA1   A0A1Q3G5H8   A0A0N1ICN4   A0A0N0PAY2   A0A0N0PB70   A0A2J7PGT0   H9JSR3   A0A0N0PAC1   A0A0N8E5H6   A0A1B6DPI9   A0A2J7PGT7   A0A1Q3G5G7   A0A067QUP0   R4FLL5   A0A1B6FRX7   A0A0P5DLU5   A0A151IL06   H9GAK1   A0A069DST5   A0A151WEM9   A0A195FH86   E2AM66   A0A2J7PGU9   D6X0B3   A0A151IVL0   A0A0K8URJ7   A0A0P6BK02   A0A195BEN0   A0A158NKK8   A0A1W4XHF8   W8BZ25   A0A034W5L3   A0A1B6IV52   A0A0L7RHT2   A0A0N1IDL3   K7IP74   E9GMH1   A0A1B6LG81   E2BNF8   A0A0P5JEC0   A0A0A1XDP5   V9KU50   A0A224XFL4   Q17GA4   A0A0P5JH40   V4AKA2   K1R790   A0A2I4AU28   A0A026WH33   A0A3Q2WGP4   K1Q9G0   A0A3Q4G365   A0A087TBA3   A0A3P8PS94   A0A3P9BNR6   A0A2I4AU46   A0A2C9K9F2   W8BRX4   A0A0K8VZD3   B0XLA9   A0A034W3X1   A7RNX1   A0A0P5LS57   A0A1W4WGA8   R4GAG6   A0A0S7KYR3   A0A182VIF5   A0A182LH67   A0A182HY29   E9GHT3   A0A0A1X7Y5   A0A2P6L863   B4M3Z8   A0A1W4WGA3   A0A182U7J4   W4ZIF1   A0A3B4GRP8   I3J2X8   A0A2J7PGU3   A0A0L7L5N4   A0A2J7QDU2   A0A0J7L004   A0A0P5UI40   A0A3Q1EP65   A0A023F7P3   A0A3Q2TZ83   F4X379  

Pubmed

19121390    26227816    26354079    22118469    22651552    24845553    + More
21881562    26334808    20798317    18362917    19820115    21347285    24495485    25348373    20075255    21292972    25830018    24402279    17510324    23254933    22992520    24508170    30249741    25186727    15562597    17615350    20966253    17994087    25474469    21719571   

EMBL

BABH01032240    ODYU01006737    SOQ48856.1    NWSH01008708    PCG62440.1    JTDY01005329    + More
KOB67106.1    KQ458665    KPJ05596.1    KQ461133    KPJ08898.1    AGBW02010210    OWR48927.1    KPJ08897.1    KPJ05595.1    KOB67107.1    NWSH01005060    PCG64471.1    SOQ48855.1    NEVH01025161    PNF15592.1    AK404009    BAM20091.1    GEYN01000183    JAV44806.1    KPJ05597.1    KPJ08901.1    KPJ08899.1    PNF15543.1    BABH01032245    KPJ05598.1    GDIQ01059860    JAN34877.1    GEDC01009721    JAS27577.1    PNF15542.1    GEYN01000196    JAV44793.1    KK853387    KDR07942.1    GAHY01001333    JAA76177.1    GECZ01025002    GECZ01017006    JAS44767.1    JAS52763.1    GDIP01157800    JAJ65602.1    KQ977151    KYN05278.1    AAWZ02022819    GBGD01002103    JAC86786.1    KQ983238    KYQ46262.1    KQ981606    KYN39592.1    GL440715    EFN65472.1    PNF15560.1    KQ971372    EFA10520.1    KQ980895    KYN11766.1    GDHF01023108    JAI29206.1    GDIP01013477    LRGB01000243    JAM90238.1    KZS20137.1    KQ976509    KYM82669.1    ADTU01000291    GAMC01004622    JAC01934.1    GAKP01009537    JAC49415.1    GECU01016890    JAS90816.1    KQ414590    KOC70369.1    KPJ08900.1    GL732552    EFX79364.1    GEBQ01017270    JAT22707.1    GL449414    EFN82737.1    GDIQ01201309    JAK50416.1    GBXI01016837    GBXI01005231    JAC97454.1    JAD09061.1    JW869425    AFP01943.1    GFTR01005159    JAW11267.1    CH477264    EAT45601.1    EAT45602.1    GDIQ01200010    JAK51715.1    KB201701    ESO95165.1    JH818186    EKC41628.1    KK107250    QOIP01000002    EZA54384.1    RLU25994.1    JH817020    EKC30553.1    KK114425    KFM62392.1    GAMC01004623    JAC01933.1    GDHF01008354    JAI43960.1    DS234386    EDS33797.1    GAKP01009538    JAC49414.1    DS469524    EDO46815.1    GDIQ01166025    JAK85700.1    GBYX01192259    JAO82412.1    APCN01004485    GL732545    EFX80894.1    GBXI01006878    JAD07414.1    MWRG01001082    PRD34763.1    CH940652    EDW59359.1    AAGJ04078790    AERX01000040    PNF15541.1    JTDY01002853    KOB70599.1    NEVH01015814    PNF26749.1    LBMM01001639    KMQ95961.1    GDIP01112562    JAL91152.1    GBBI01001321    JAC17391.1    GL888609    EGI59060.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000053240    UP000007151    + More
UP000235965    UP000027135    UP000078542    UP000001646    UP000075809    UP000078541    UP000000311    UP000007266    UP000078492    UP000076858    UP000078540    UP000005205    UP000192223    UP000053825    UP000002358    UP000000305    UP000008237    UP000008820    UP000030746    UP000005408    UP000192220    UP000053097    UP000279307    UP000264840    UP000261580    UP000054359    UP000265100    UP000265160    UP000076420    UP000002320    UP000001593    UP000075903    UP000075882    UP000075840    UP000008792    UP000075902    UP000007110    UP000261460    UP000005207    UP000036403    UP000257200    UP000265000    UP000007755   

PRIDE

H9JSL6    H9JSR3   

Pfam

PF00106   adh_short

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JSL6   A0A2H1W7C7   A0A2A4ITG8   A0A0L7KVJ8   A0A0N0PAN9   A0A0N0PAY1   + More
A0A212F5B7   A0A0N1IF98   A0A0N0PAB9   A0A0L7KV18   A0A2A4IXN8   A0A2H1W6X7   A0A2J7PGY1   I4DQA1   A0A1Q3G5H8   A0A0N1ICN4   A0A0N0PAY2   A0A0N0PB70   A0A2J7PGT0   H9JSR3   A0A0N0PAC1   A0A0N8E5H6   A0A1B6DPI9   A0A2J7PGT7   A0A1Q3G5G7   A0A067QUP0   R4FLL5   A0A1B6FRX7   A0A0P5DLU5   A0A151IL06   H9GAK1   A0A069DST5   A0A151WEM9   A0A195FH86   E2AM66   A0A2J7PGU9   D6X0B3   A0A151IVL0   A0A0K8URJ7   A0A0P6BK02   A0A195BEN0   A0A158NKK8   A0A1W4XHF8   W8BZ25   A0A034W5L3   A0A1B6IV52   A0A0L7RHT2   A0A0N1IDL3   K7IP74   E9GMH1   A0A1B6LG81   E2BNF8   A0A0P5JEC0   A0A0A1XDP5   V9KU50   A0A224XFL4   Q17GA4   A0A0P5JH40   V4AKA2   K1R790   A0A2I4AU28   A0A026WH33   A0A3Q2WGP4   K1Q9G0   A0A3Q4G365   A0A087TBA3   A0A3P8PS94   A0A3P9BNR6   A0A2I4AU46   A0A2C9K9F2   W8BRX4   A0A0K8VZD3   B0XLA9   A0A034W3X1   A7RNX1   A0A0P5LS57   A0A1W4WGA8   R4GAG6   A0A0S7KYR3   A0A182VIF5   A0A182LH67   A0A182HY29   E9GHT3   A0A0A1X7Y5   A0A2P6L863   B4M3Z8   A0A1W4WGA3   A0A182U7J4   W4ZIF1   A0A3B4GRP8   I3J2X8   A0A2J7PGU3   A0A0L7L5N4   A0A2J7QDU2   A0A0J7L004   A0A0P5UI40   A0A3Q1EP65   A0A023F7P3   A0A3Q2TZ83   F4X379  

PDB

3RD5     E-value=7.31754e-22,     Score=255

KEGG

101743218    no KO assigned | (RefSeq) retinol dehydrogenase 14 pseudogene

GO

GO:0016491   GO:0016021   GO:0008483   GO:0030170   GO:0000387   GO:0000398   GO:0005685   GO:0003677   GO:0005515   GO:0016742   GO:0003824  

Length:

318

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

20.08164

Exp number, first 60 AAs:

14.04009

Total prob of N-in:

0.59578

POSSIBLE N-term signal

sequence

outside

1  -  318

 

 

Pi

341.641043

Theta

185.614648

Tajima's D

2.66004

CLR

0.426541

CSRT

0.95925203739813

Interpretation

Uncertain