Gene

KWMTBOMO05022

Pre Gene Modal

BGIBMGA012574

Annotation

PREDICTED:_retinol_dehydrogenase_11-like_[Bombyx_mori]

Location

Bomo_Chr9(-):5770198-5771437      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.309 Mitochondrial   Reliability : 1.491

CDS

ATGTGTAGGCATTTGGTCAGCAAAGTGGTGATAGTGACCGGAAGCAACAACGGTATAGGATACGAGACAGCAAAAGACTTAGCGGAGCGTGGAGCCCGGGTAATACTCGCTTGCAGGAACGATCTACGCGGTACCAAGGCCAGAGACCAGATCATTGCAGAATCAGGGAACCACGATGTGCATTATCGTCAGTTGGATTTAGCGTCATTTGGTTCTGTCAGAAGATTCGCTGAAGAATTCATTAAAACCGAAAATCGTTTAGACATTCTTATCAACAATGCTGGAGTACTCGTCGTGGACAATGTAAAGACGGAAAACGGCTTGTTTGTCGGTATGCAAGCAAATCACTTCGGGCCATTTCTGCTCACGAAGCTTCTTCTTCCGCTAATTAAATCGTCAGCTCCGAGTCGCATCATCAACGTTTCTTCCCTAGCCTACTCAAAAGGAATTATTGATTTTAACAATTTAAATTTGGAAAAAGAAACCCCGCAGTCATACAGTAAAATACAAGCATATAAAAACAGCAAGCTGTGTAATGTTCTAATGACCACTGAGTTGGCAAGACGGCTTGAAGGTACTAGAGTGACTGCTAATTGCTTACATCCCGGCTTAGTAAAAACTGAAATTGTAAATTCTGATAAACTGCCATTTTCGAAGTACTGGGTTCCTATCGCAAGTTTATTTGTTAAGACCCCTCGGGAAGGGGCTCAGACTTCAATATACCTGGCGGTGTCTCCTGAGGTAGAAAACGTAACCGGCTGCTATTTCGCCGATTGTCAGGTTAAAACTTTAACCGAAACGGGGCGTAATACTGAACTGGCTCGCCGTCTCTGGGAAGAGTCTGAAAAAATAATTGCGAAGAAATGA

Protein

MCRHLVSKVVIVTGSNNGIGYETAKDLAERGARVILACRNDLRGTKARDQIIAESGNHDVHYRQLDLASFGSVRRFAEEFIKTENRLDILINNAGVLVVDNVKTENGLFVGMQANHFGPFLLTKLLLPLIKSSAPSRIINVSSLAYSKGIIDFNNLNLEKETPQSYSKIQAYKNSKLCNVLMTTELARRLEGTRVTANCLHPGLVKTEIVNSDKLPFSKYWVPIASLFVKTPREGAQTSIYLAVSPEVENVTGCYFADCQVKTLTETGRNTELARRLWEESEKIIAKK

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JSR3   A0A0N0PAY2   A0A2A4IXN8   A0A0L7KV18   I4DQA1   A0A0N0PB70   + More
A0A2H1W6X7   A0A0N1ICN4   A0A1Q3G5H8   A0A0N0PAC1   A0A0N1IDL3   A0A212F5B7   A0A1Q3G5G7   A0A0L7KVJ8   A0A2A4ITG8   A0A2H1W7C7   A0A0N0PAN9   A0A3P8YKM0   A0A3P9A7S4   A0A1L8E4I5   A0A0N0PAY1   A0A3P8XDV8   A0A1L8E4K0   A0A0N1IF98   A0A2I4D8B2   W5NAH8   A0A3B3BDF8   A0A0L7L5N4   A0A3Q2UEG4   A0A2J7PGY1   A0A1Y1N8N2   A0A1Y1NCI4   K7FV47   H9GAK1   A0A3Q1J6H1   A0A3Q2DGZ5   A0A146XYN2   A0A147APK5   D6X0B0   H9JSL6   B3RKN4   A0A1A8VGE8   B5UAY9   W4ZIF1   H3AXM0   H2Z7K1   A0A3N0XRZ0   A0A0N0PAB9   B3RKN5   A0A1S3M3L0   A0A2D0PVD8   A0A060VRE0   A0A218UIJ9   A0A0N8E5H6   A0A1S3M424   A0A2J7PGT7   A0A1S3M363   A0A3P9JF09   A0A2J7PGT0   A0A0Q9WF80   A0A3P9I0S4   B3SEC9   B3SEC8   A0A0B7ANX9   B3RKK3   A0A1S3S0C8   A0A369RY25   A0A369RLX1   A0A1D2MFP1   B4LJG7   A0A0K8TLB0   H2N2X4   A0A3B3SMQ9   A0A3B3SLF6   A0A1B0GM47   A0A369RZQ8   A0A0M4EVS0   B4KPR0   A0A0Q9X8T9   A0A0P7XD55   A0A3B3SMR9   A0A1W5B461   A0A060XHT8   A0A3B3SMK7   A0A1S3QIK4   A0A0P5UI40   U3JRI9   A0A1S3JQV8   H2T513   A0A3B1JIS7   A0A0P8XPH1   A0A0Q3UTV3   A0A3Q3MS71   A0A2P6L863   A0A0P5YX32   A0A2I0U8W0   A0A0P6GLC1   A0A3Q3FY47   A0A3Q3MTU9   B0XLA9  

Pubmed

19121390    26354079    26227816    22651552    22118469    25069045    + More
29451363    28004739    17381049    21881562    18362917    19820115    18719581    9215903    24755649    17554307    17994087    30042472    27289101    26369729    29240929    21551351    25329095   

EMBL

BABH01032245    KQ461133    KPJ08901.1    NWSH01005060    PCG64471.1    JTDY01005329    + More
KOB67107.1    AK404009    BAM20091.1    KPJ08899.1    ODYU01006737    SOQ48855.1    KQ458665    KPJ05597.1    GEYN01000183    JAV44806.1    KPJ05598.1    KPJ08900.1    AGBW02010210    OWR48927.1    GEYN01000196    JAV44793.1    KOB67106.1    NWSH01008708    PCG62440.1    SOQ48856.1    KPJ05596.1    GFDF01000434    JAV13650.1    KPJ08898.1    GFDF01000433    JAV13651.1    KPJ08897.1    AHAT01005059    JTDY01002853    KOB70599.1    NEVH01025161    PNF15592.1    GEZM01009786    JAV94304.1    GEZM01009785    JAV94305.1    AGCU01021282    AAWZ02022819    GCES01039838    JAR46485.1    GCES01005956    JAR80367.1    KQ971372    EFA10517.1    BABH01032240    DS985241    EDV29193.1    HAEJ01017786    SBS58243.1    AB439581    BAG72431.1    AAGJ04078790    AFYH01129353    RJVU01062584    ROJ29328.1    KPJ05595.1    EDV29194.1    FR904286    CDQ57371.1    MUZQ01000282    OWK53555.1    GDIQ01059860    JAN34877.1    PNF15542.1    PNF15543.1    CH940648    KRF80052.1    DS985430    EDV18917.1    EDV18916.1    HACG01034750    CEK81615.1    EDV29907.1    NOWV01000138    RDD39359.1    NOWV01000972    RDD35818.1    LJIJ01001415    ODM91806.1    EDW61535.1    GDAI01002635    JAI14968.1    AJVK01011173    NOWV01000110    RDD40168.1    CP012524    ALC42025.1    CH933808    EDW09170.2    KRG04501.1    JARO02002249    KPP73165.1    FR905416    CDQ79168.1    GDIP01112562    JAL91152.1    AGTO01010438    CH902619    KPU76518.1    LMAW01000825    KQK85306.1    MWRG01001082    PRD34763.1    GDIP01052070    JAM51645.1    KZ505992    PKU42472.1    GDIQ01042179    JAN52558.1    DS234386    EDS33797.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000037510    UP000053268    UP000007151    + More
UP000265140    UP000192220    UP000018468    UP000261560    UP000265000    UP000235965    UP000007267    UP000001646    UP000265040    UP000265020    UP000007266    UP000009022    UP000007110    UP000008672    UP000007875    UP000087266    UP000221080    UP000193380    UP000197619    UP000265200    UP000008792    UP000253843    UP000094527    UP000001038    UP000261540    UP000092462    UP000092553    UP000009192    UP000034805    UP000192224    UP000016665    UP000085678    UP000005226    UP000018467    UP000007801    UP000051836    UP000261640    UP000261660    UP000002320   

PRIDE

H9JSR3    H9JSL6   

Pfam

PF00106   adh_short

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JSR3   A0A0N0PAY2   A0A2A4IXN8   A0A0L7KV18   I4DQA1   A0A0N0PB70   + More
A0A2H1W6X7   A0A0N1ICN4   A0A1Q3G5H8   A0A0N0PAC1   A0A0N1IDL3   A0A212F5B7   A0A1Q3G5G7   A0A0L7KVJ8   A0A2A4ITG8   A0A2H1W7C7   A0A0N0PAN9   A0A3P8YKM0   A0A3P9A7S4   A0A1L8E4I5   A0A0N0PAY1   A0A3P8XDV8   A0A1L8E4K0   A0A0N1IF98   A0A2I4D8B2   W5NAH8   A0A3B3BDF8   A0A0L7L5N4   A0A3Q2UEG4   A0A2J7PGY1   A0A1Y1N8N2   A0A1Y1NCI4   K7FV47   H9GAK1   A0A3Q1J6H1   A0A3Q2DGZ5   A0A146XYN2   A0A147APK5   D6X0B0   H9JSL6   B3RKN4   A0A1A8VGE8   B5UAY9   W4ZIF1   H3AXM0   H2Z7K1   A0A3N0XRZ0   A0A0N0PAB9   B3RKN5   A0A1S3M3L0   A0A2D0PVD8   A0A060VRE0   A0A218UIJ9   A0A0N8E5H6   A0A1S3M424   A0A2J7PGT7   A0A1S3M363   A0A3P9JF09   A0A2J7PGT0   A0A0Q9WF80   A0A3P9I0S4   B3SEC9   B3SEC8   A0A0B7ANX9   B3RKK3   A0A1S3S0C8   A0A369RY25   A0A369RLX1   A0A1D2MFP1   B4LJG7   A0A0K8TLB0   H2N2X4   A0A3B3SMQ9   A0A3B3SLF6   A0A1B0GM47   A0A369RZQ8   A0A0M4EVS0   B4KPR0   A0A0Q9X8T9   A0A0P7XD55   A0A3B3SMR9   A0A1W5B461   A0A060XHT8   A0A3B3SMK7   A0A1S3QIK4   A0A0P5UI40   U3JRI9   A0A1S3JQV8   H2T513   A0A3B1JIS7   A0A0P8XPH1   A0A0Q3UTV3   A0A3Q3MS71   A0A2P6L863   A0A0P5YX32   A0A2I0U8W0   A0A0P6GLC1   A0A3Q3FY47   A0A3Q3MTU9   B0XLA9  

PDB

3RD5     E-value=1.14682e-26,     Score=296

KEGG

101735372    K11153 retinol dehydrogenase 12 [EC:1.1.1.300] | (RefSeq) retinol dehydrogenase 11-like

PATHWAY

00830    Retinol metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016491   GO:0042574   GO:0005789   GO:0110095   GO:0052650  

Length:

288

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05278

Exp number, first 60 AAs:

0.01043

Total prob of N-in:

0.07254

outside

1  -  288

 

 

Pi

230.878971

Theta

164.613685

Tajima's D

1.266022

CLR

0

CSRT

0.729713514324284

Interpretation

Uncertain