SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05021
Pre Gene Modal
BGIBMGA012574
Annotation
PREDICTED:_retinol_dehydrogenase_11-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 2.502
 

Sequence

CDS
ATGGTTTTCATTAGTTTTATTGTGTTGAATCTCATATTAGCGTTACTTTATATAACGTATTGTAAATTAACATACGGTATAAATAAATGCAGCAGGCATTTGGTCAGCAAAGTGGTGATAGTGACCGGAAGCAACAACGGTATAGGATACGAGACAGCAAAAGACTTAGCGGAGCGTGGAGCCCGGGTAATACTCGCTTGCAGGAACGATCTACGCGGTACCAAGGCCAGAGACCAGATCATTGCAGAATCAGGGAACCACGATGTGCATTATCGTCAGTTGGATTTAGCGTCATTTGATTCTGTCAGAAGATTCGCTGAAGAATTCATTAAAACCGAAAATCGTTTAGACATTCTTATCAACAATGCTGGAGTATTCGACGTGGACAATGTAAAGACGGAAAACGGCTTGTTTGTCGGTATGCAAGCAAATCACTTCGGGCCATTTCTGCTCACGAAGCTTCTTCTTCCGCTAATTAAATCGTCAGCTCCGAGTCGCATCATCAACGTTTCTTCCCTAGCCTACTCAAAAGGAATTATTGATTTTAACAATTTAAATTTGGAAAAAGAAACCCCACAGTCATACAGTAAAATACAAGCATATAAAAACAGCAAGCTGTGTAATGTTCTAATGACCACTGAGTTGGCGAGACGGCTTGAAGGTACTGGAGTGACTGCTAATTGCTTACATCCTGGCTTAGTAAATACTGATATTTTAAATTCTGATAAACTGCCATTTTCGAAGTACTGGCTTCCTGTCACAAGTTTCTTTATTAAGACCCCTCGGGAAGGGGCTCAGACTTCAATATATCTGGCGGTGTCTCCTGAGGTAGAAAACGTAACCGGCTGTTATTTCGCCGATTGTCAGGTTAAAACTTTAACCAAAACGGGGCGTAATACTGAACTGGCTCGCCGTCTCTGGGAAGAGTCTGAAAAAATAATTGCAAAGAAATGA
Protein
MVFISFIVLNLILALLYITYCKLTYGINKCSRHLVSKVVIVTGSNNGIGYETAKDLAERGARVILACRNDLRGTKARDQIIAESGNHDVHYRQLDLASFDSVRRFAEEFIKTENRLDILINNAGVFDVDNVKTENGLFVGMQANHFGPFLLTKLLLPLIKSSAPSRIINVSSLAYSKGIIDFNNLNLEKETPQSYSKIQAYKNSKLCNVLMTTELARRLEGTGVTANCLHPGLVNTDILNSDKLPFSKYWLPVTSFFIKTPREGAQTSIYLAVSPEVENVTGCYFADCQVKTLTKTGRNTELARRLWEESEKIIAKK

Summary

Similarity
Belongs to the short-chain dehydrogenases/reductases (SDR) family.
EMBL
BABH01032245    JTDY01005329    KOB67107.1    ODYU01006737    SOQ48855.1    AK404009    + More
BAM20091.1    KQ461133    KPJ08901.1    NWSH01005060    PCG64471.1    KQ458665    KPJ05597.1    KPJ08899.1    GEYN01000183    JAV44806.1    KPJ05598.1    KPJ08900.1    KOB67106.1    SOQ48856.1    NWSH01008708    PCG62440.1    GEYN01000196    JAV44793.1    AGBW02010210    OWR48927.1    KPJ05596.1    KPJ08898.1    BABH01032240    NEVH01025161    PNF15592.1    GEZM01009786    JAV94304.1    KQ971372    EFA10517.1    GEZM01009785    JAV94305.1    JTDY01002853    KOB70599.1    PNF15543.1    AGCU01021282    KPJ08897.1    PNF15542.1    PNF15560.1    AHAT01005059    GCES01039838    JAR46485.1    GCES01005956    JAR80367.1    DS234386    EDS33797.1    GDIQ01059860    JAN34877.1    KPJ05595.1    GFDF01000434    JAV13650.1    ODYU01001508    SOQ37815.1    HAEJ01017786    SBS58243.1    CH940648    KRF80052.1    GDIP01112562    JAL91152.1    BFAA01003532    GCB71810.1    AAGJ04078790    HACG01034750    CEK81615.1    GFDF01000433    JAV13651.1    EDW61535.1    KB201701    ESO95165.1    DS985241    EDV29193.1    KQ460651    KPJ13037.1    CH902619    KPU76518.1    CH933808    EDW09170.2    KZ149935    PZC77183.1    KRG04501.1    JW869425    AFP01943.1    RJVU01062584    ROJ29328.1    NWSH01001250    PCG71979.1    GDAI01002635    JAI14968.1    MWRG01001082    PRD34763.1    RQTK01000656    RUS76525.1    LJIJ01001415    ODM91806.1    DS985430    EDV18917.1    CP012524    ALC42025.1    AFYH01129353    CM012452    RVE63253.1    CH477264    EAT45601.1    EAT45602.1    AAWZ02022819    MUZQ01000282    OWK53555.1    AB439581    BAG72431.1    BDOT01000029    GCF46221.1    GEYN01000193    JAV44796.1    JTDY01000784    KOB75884.1    EDV29194.1    KQ459582    KPI99040.1    GDIP01052070    JAM51645.1    GDIQ01042179    JAN52558.1    GEFM01004225    JAP71571.1    GBGD01002103    JAC86786.1    GL732545    EFX80894.1    GDIP01026350    JAM77365.1   
Pfam
PF00106   adh_short
Interpro
IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
SUPFAM
SSF51735   SSF51735       
PDB
3RD5     E-value=4.95422e-27,     Score=300

Ontologies

Topology

SignalP
Position:   1 - 21,         Likelihood:  0.573918
 
 
Length:
317
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.34554
Exp number, first 60 AAs:
20.2076
Total prob of N-in:
0.73626
POSSIBLE N-term signal
sequence
inside
1  -  4
TMhelix
5  -  27
outside
28  -  317
 
 

Population Genetic Test Statistics

Pi
286.398071
Theta
184.326493
Tajima's D
1.764964
CLR
0.639879
CSRT
0.840757962101895
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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