Gene

KWMTBOMO05021

Pre Gene Modal

BGIBMGA012574

Annotation

PREDICTED:_retinol_dehydrogenase_11-like_[Bombyx_mori]

Location

Bomo_Chr9(-):5766695-5767897      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.502

CDS

ATGGTTTTCATTAGTTTTATTGTGTTGAATCTCATATTAGCGTTACTTTATATAACGTATTGTAAATTAACATACGGTATAAATAAATGCAGCAGGCATTTGGTCAGCAAAGTGGTGATAGTGACCGGAAGCAACAACGGTATAGGATACGAGACAGCAAAAGACTTAGCGGAGCGTGGAGCCCGGGTAATACTCGCTTGCAGGAACGATCTACGCGGTACCAAGGCCAGAGACCAGATCATTGCAGAATCAGGGAACCACGATGTGCATTATCGTCAGTTGGATTTAGCGTCATTTGATTCTGTCAGAAGATTCGCTGAAGAATTCATTAAAACCGAAAATCGTTTAGACATTCTTATCAACAATGCTGGAGTATTCGACGTGGACAATGTAAAGACGGAAAACGGCTTGTTTGTCGGTATGCAAGCAAATCACTTCGGGCCATTTCTGCTCACGAAGCTTCTTCTTCCGCTAATTAAATCGTCAGCTCCGAGTCGCATCATCAACGTTTCTTCCCTAGCCTACTCAAAAGGAATTATTGATTTTAACAATTTAAATTTGGAAAAAGAAACCCCACAGTCATACAGTAAAATACAAGCATATAAAAACAGCAAGCTGTGTAATGTTCTAATGACCACTGAGTTGGCGAGACGGCTTGAAGGTACTGGAGTGACTGCTAATTGCTTACATCCTGGCTTAGTAAATACTGATATTTTAAATTCTGATAAACTGCCATTTTCGAAGTACTGGCTTCCTGTCACAAGTTTCTTTATTAAGACCCCTCGGGAAGGGGCTCAGACTTCAATATATCTGGCGGTGTCTCCTGAGGTAGAAAACGTAACCGGCTGTTATTTCGCCGATTGTCAGGTTAAAACTTTAACCAAAACGGGGCGTAATACTGAACTGGCTCGCCGTCTCTGGGAAGAGTCTGAAAAAATAATTGCAAAGAAATGA

Protein

MVFISFIVLNLILALLYITYCKLTYGINKCSRHLVSKVVIVTGSNNGIGYETAKDLAERGARVILACRNDLRGTKARDQIIAESGNHDVHYRQLDLASFDSVRRFAEEFIKTENRLDILINNAGVFDVDNVKTENGLFVGMQANHFGPFLLTKLLLPLIKSSAPSRIINVSSLAYSKGIIDFNNLNLEKETPQSYSKIQAYKNSKLCNVLMTTELARRLEGTGVTANCLHPGLVNTDILNSDKLPFSKYWLPVTSFFIKTPREGAQTSIYLAVSPEVENVTGCYFADCQVKTLTKTGRNTELARRLWEESEKIIAKK

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JSR3   A0A0L7KV18   A0A2H1W6X7   I4DQA1   A0A0N0PAY2   A0A2A4IXN8   + More
A0A0N1ICN4   A0A0N0PB70   A0A1Q3G5H8   A0A0N0PAC1   A0A0N1IDL3   A0A0L7KVJ8   A0A2H1W7C7   A0A2A4ITG8   A0A1Q3G5G7   A0A212F5B7   A0A0N0PAN9   A0A0N0PAY1   H9JSL6   A0A2J7PGY1   A0A1Y1N8N2   D6X0B0   A0A1Y1NCI4   A0A0L7L5N4   A0A2J7PGT0   A0A3P8XDV8   A0A3B3BDF8   K7FV47   A0A0N1IF98   A0A2J7PGT7   A0A2J7PGU9   A0A2I4D8B2   A0A3Q2UEG4   A0A3Q2DGZ5   W5NAH8   A0A146XYN2   A0A147APK5   A0A3P8YKM0   A0A3P9A7S4   B0XLA9   A0A0N8E5H6   A0A0N0PAB9   A0A1L8E4I5   A0A2H1VAE5   A0A1A8VGE8   A0A0Q9WF80   A0A0P5UI40   A0A401PF84   W4ZIF1   A0A0B7ANX9   A0A1L8E4K0   B4LJG7   V4AKA2   B3RKN4   A0A0N0PC61   A0A0P8XPH1   A0A3Q3MTU9   A0A3Q3FY47   B4KPR0   A0A3P9JF09   A0A3Q3FW11   A0A2W1BZE1   A0A3P9I0S4   A0A3Q1J6H1   A0A0Q9X8T9   V9KU50   A0A3N0XRZ0   A0A2A4JJH1   A0A0K8TLB0   A0A2P6L863   A0A433T4Q0   A0A1D2MFP1   A0A3Q3MS71   H2N2X4   B3SEC9   H2T513   A0A0M4EVS0   A0A452HAG6   H3AXM0   A0A437CLE4   A0A1W4WGA8   Q17GA4   H9GAK1   A0A218UIJ9   B5UAY9   A0A402EQ16   A0A1S3S0C8   A0A1Q3G5I9   A0A3B4UP20   A0A0L7LKJ0   A0A452HAG7   B3RKN5   A0A194Q6L5   A0A0P5YX32   A0A0P6GLC1   A0A131Y106   A0A069DST5   A0A3B5A1H2   E9GHT3   A0A0P6APB3  

Pubmed

19121390    26227816    22651552    26354079    22118469    28004739    + More
18362917    19820115    25069045    29451363    17381049    17994087    30297745    23254933    18719581    17554307    28756777    24402279    26369729    27289101    21551351    28562605    9215903    17510324    21881562    26334808    21292972   

EMBL

BABH01032245    JTDY01005329    KOB67107.1    ODYU01006737    SOQ48855.1    AK404009    + More
BAM20091.1    KQ461133    KPJ08901.1    NWSH01005060    PCG64471.1    KQ458665    KPJ05597.1    KPJ08899.1    GEYN01000183    JAV44806.1    KPJ05598.1    KPJ08900.1    KOB67106.1    SOQ48856.1    NWSH01008708    PCG62440.1    GEYN01000196    JAV44793.1    AGBW02010210    OWR48927.1    KPJ05596.1    KPJ08898.1    BABH01032240    NEVH01025161    PNF15592.1    GEZM01009786    JAV94304.1    KQ971372    EFA10517.1    GEZM01009785    JAV94305.1    JTDY01002853    KOB70599.1    PNF15543.1    AGCU01021282    KPJ08897.1    PNF15542.1    PNF15560.1    AHAT01005059    GCES01039838    JAR46485.1    GCES01005956    JAR80367.1    DS234386    EDS33797.1    GDIQ01059860    JAN34877.1    KPJ05595.1    GFDF01000434    JAV13650.1    ODYU01001508    SOQ37815.1    HAEJ01017786    SBS58243.1    CH940648    KRF80052.1    GDIP01112562    JAL91152.1    BFAA01003532    GCB71810.1    AAGJ04078790    HACG01034750    CEK81615.1    GFDF01000433    JAV13651.1    EDW61535.1    KB201701    ESO95165.1    DS985241    EDV29193.1    KQ460651    KPJ13037.1    CH902619    KPU76518.1    CH933808    EDW09170.2    KZ149935    PZC77183.1    KRG04501.1    JW869425    AFP01943.1    RJVU01062584    ROJ29328.1    NWSH01001250    PCG71979.1    GDAI01002635    JAI14968.1    MWRG01001082    PRD34763.1    RQTK01000656    RUS76525.1    LJIJ01001415    ODM91806.1    DS985430    EDV18917.1    CP012524    ALC42025.1    AFYH01129353    CM012452    RVE63253.1    CH477264    EAT45601.1    EAT45602.1    AAWZ02022819    MUZQ01000282    OWK53555.1    AB439581    BAG72431.1    BDOT01000029    GCF46221.1    GEYN01000193    JAV44796.1    JTDY01000784    KOB75884.1    EDV29194.1    KQ459582    KPI99040.1    GDIP01052070    JAM51645.1    GDIQ01042179    JAN52558.1    GEFM01004225    JAP71571.1    GBGD01002103    JAC86786.1    GL732545    EFX80894.1    GDIP01026350    JAM77365.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000218220    UP000053268    UP000007151    + More
UP000235965    UP000007266    UP000265140    UP000261560    UP000007267    UP000192220    UP000265000    UP000265020    UP000018468    UP000002320    UP000008792    UP000288216    UP000007110    UP000030746    UP000009022    UP000007801    UP000261660    UP000009192    UP000265200    UP000265040    UP000271974    UP000094527    UP000261640    UP000001038    UP000005226    UP000092553    UP000291020    UP000008672    UP000192223    UP000008820    UP000001646    UP000197619    UP000288954    UP000087266    UP000261420    UP000261400    UP000000305   

PRIDE

H9JSR3    H9JSL6   

Pfam

PF00106   adh_short

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JSR3   A0A0L7KV18   A0A2H1W6X7   I4DQA1   A0A0N0PAY2   A0A2A4IXN8   + More
A0A0N1ICN4   A0A0N0PB70   A0A1Q3G5H8   A0A0N0PAC1   A0A0N1IDL3   A0A0L7KVJ8   A0A2H1W7C7   A0A2A4ITG8   A0A1Q3G5G7   A0A212F5B7   A0A0N0PAN9   A0A0N0PAY1   H9JSL6   A0A2J7PGY1   A0A1Y1N8N2   D6X0B0   A0A1Y1NCI4   A0A0L7L5N4   A0A2J7PGT0   A0A3P8XDV8   A0A3B3BDF8   K7FV47   A0A0N1IF98   A0A2J7PGT7   A0A2J7PGU9   A0A2I4D8B2   A0A3Q2UEG4   A0A3Q2DGZ5   W5NAH8   A0A146XYN2   A0A147APK5   A0A3P8YKM0   A0A3P9A7S4   B0XLA9   A0A0N8E5H6   A0A0N0PAB9   A0A1L8E4I5   A0A2H1VAE5   A0A1A8VGE8   A0A0Q9WF80   A0A0P5UI40   A0A401PF84   W4ZIF1   A0A0B7ANX9   A0A1L8E4K0   B4LJG7   V4AKA2   B3RKN4   A0A0N0PC61   A0A0P8XPH1   A0A3Q3MTU9   A0A3Q3FY47   B4KPR0   A0A3P9JF09   A0A3Q3FW11   A0A2W1BZE1   A0A3P9I0S4   A0A3Q1J6H1   A0A0Q9X8T9   V9KU50   A0A3N0XRZ0   A0A2A4JJH1   A0A0K8TLB0   A0A2P6L863   A0A433T4Q0   A0A1D2MFP1   A0A3Q3MS71   H2N2X4   B3SEC9   H2T513   A0A0M4EVS0   A0A452HAG6   H3AXM0   A0A437CLE4   A0A1W4WGA8   Q17GA4   H9GAK1   A0A218UIJ9   B5UAY9   A0A402EQ16   A0A1S3S0C8   A0A1Q3G5I9   A0A3B4UP20   A0A0L7LKJ0   A0A452HAG7   B3RKN5   A0A194Q6L5   A0A0P5YX32   A0A0P6GLC1   A0A131Y106   A0A069DST5   A0A3B5A1H2   E9GHT3   A0A0P6APB3  

PDB

3RD5     E-value=4.95422e-27,     Score=300

KEGG

101735372    K11153 retinol dehydrogenase 12 [EC:1.1.1.300] | (RefSeq) retinol dehydrogenase 11-like

GO

GO:0016021   GO:0016491   GO:0042574   GO:0005789   GO:0110095   GO:0052650  

SignalP

Position:   1 - 21,         Likelihood:  0.573918

 

 

Length:

317

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.34554

Exp number, first 60 AAs:

20.2076

Total prob of N-in:

0.73626

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  27

outside

28  -  317

 

 

Pi

286.398071

Theta

184.326493

Tajima's D

1.764964

CLR

0.639879

CSRT

0.840757962101895

Interpretation

Uncertain