Gene

KWMTBOMO05020

Pre Gene Modal

BGIBMGA012576

Annotation

PREDICTED:_nucleic-acid-binding_protein_from_mobile_element_jockey-like_[Amyelois_transitella]

Location

Bomo_Chr9(-):5725233-5726337      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.745

CDS

ATGTCTCAAAAATCAAAAAAGAAAGGAAAGAATATATCTCAAGCTCTAAGGAAGTGCAAAATAAATACTGACCTACAGGTTACTACAGAAGGTTCTGTTATAGACAATCTCTACCAACCAGATCATAAAAAGTGGCACAAACTAAAACAGAAGGTGCCTGTAGTATTCATACATAAACCAATAGAATTCCCTATCTTACAGTGGCATATCAAAAACATTTTAATACTGAGTATCAACATATATGACCCATATTTTAGTAAGAATTATGTTAAATTAATGTGCCCAACGCTTAATGATCAAAAATTACTTTTACAATACTTGGAAAGAAAACAACTGCCTTATCATACATTTGGGCATCCAGCCAAGAGGAAGATGAAAGTCGTCATCAGAGGACTACCTAATAATATAGATTTAGACAAAGTTCAATTAGAATTGAAATCCTTGTTAATACCAGTAATAAGAGTTCACAAAATGCATATTAGAAACTATGAAAATAACTCTTCTTCGCCTATTTTAGCAGTCGTTCCTCATGATGAAGAAGGAAAAAGAATATTGAAAGTTAAAAAGATATTAAATATTGATGTCACATTAGAACCACCCATTAGTAAAATTCAGCAGTGTTATCGCTGCCAAAAATGGGGACATTCACAGAGGTACTGTCATGGCATTATCAAGTGTGTAAAATGCGCCGGCAATCATTCTTACAAAAAATGCAATAGGAACAAAACTACAGAGCCACCAAAATGTGCAAATTGTGGAAGTGATCACACTGCAAACTACAAGCTATGTCCTAACTACCCAGATATAGACAAACACAAAATTAAAGACCAGAAAAGGCAGCTAAAAGCAAAATCTACTGTTAAAAAAATACACGAGCTATTAACACTAGAAAACTTCATCAATACTTACAAAACTGAAGAGAGCTTGGATGATTTTGATCTTAATATCTAA

Protein

MSQKSKKKGKNISQALRKCKINTDLQVTTEGSVIDNLYQPDHKKWHKLKQKVPVVFIHKPIEFPILQWHIKNILILSINIYDPYFSKNYVKLMCPTLNDQKLLLQYLERKQLPYHTFGHPAKRKMKVVIRGLPNNIDLDKVQLELKSLLIPVIRVHKMHIRNYENNSSSPILAVVPHDEEGKRILKVKKILNIDVTLEPPISKIQQCYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKCNRNKTTEPPKCANCGSDHTANYKLCPNYPDIDKHKIKDQKRQLKAKSTVKKIHELLTLENFINTYKTEESLDDFDLNI

Uniprot

H9JSR5   A0A2A4IVK9   S4PDX4   A0A437B021   A0A2H1W738   X1WLL5   + More
J9L2K1   J9KKL5   X1XQE1   J9KV81   X1WR00   X1XEL2   A0A0A9YL51   A0A1Y1N079   A0A2J7QZ95   J9LF85   J9KC83   A0A1B0GJF1   A0A2S2QPF9   A0A087TR37   X1X065   J9JSS5   X1X2K4   A0A0J7MYU4   A0A2R7WJP8   J9LEJ6  

Pubmed

19121390    23622113    25401762    28004739   

EMBL

BABH01032250    NWSH01006063    PCG63699.1    GAIX01003456    JAA89104.1    RSAL01000238    + More
RVE43703.1    ODYU01006737    SOQ48853.1    ABLF02055562    ABLF02039154    ABLF02014866    ABLF02042385    ABLF02064781    ABLF02003242    ABLF02006260    ABLF02042516    ABLF02007289    ABLF02042519    GBHO01011260    GBHO01011258    JAG32344.1    JAG32346.1    GEZM01016225    GEZM01016224    GEZM01016223    JAV91321.1    NEVH01009072    PNF33896.1    ABLF02017813    ABLF02033757    AJWK01020247    GGMS01010422    MBY79625.1    KK116365    KFM67576.1    ABLF02064782    ABLF02031537    ABLF02006176    ABLF02062324    LBMM01013507    KMQ85610.1    KK854945    PTY19867.1    ABLF02011398   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007819    UP000235965    UP000092461    + More
UP000054359    UP000036403   

PRIDE

H9JSR5   

Pfam

PF07530   PRE_C2HC        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF00628   PHD

Interpro

IPR006579   Pre_C2HC_dom        + More
IPR000477   RT_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57903   SSF57903       
SSF54928   SSF54928       

Gene 3D

3.60.10.10     3.30.40.10     3.30.70.330    

ProteinModelPortal

H9JSR5   A0A2A4IVK9   S4PDX4   A0A437B021   A0A2H1W738   X1WLL5   + More
J9L2K1   J9KKL5   X1XQE1   J9KV81   X1WR00   X1XEL2   A0A0A9YL51   A0A1Y1N079   A0A2J7QZ95   J9LF85   J9KC83   A0A1B0GJF1   A0A2S2QPF9   A0A087TR37   X1X065   J9JSS5   X1X2K4   A0A0J7MYU4   A0A2R7WJP8   J9LEJ6  

KEGG

NA   

GO

GO:0046872   GO:0003676  

Length:

316

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12601

Exp number, first 60 AAs:

0.02745

Total prob of N-in:

0.17133

outside

1  -  316

 

 

Pi

197.95136

Theta

173.058736

Tajima's D

0.654903

CLR

4.328597

CSRT

0.56007199640018

Interpretation

Uncertain