SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05016  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012524
Annotation
PREDICTED:_activating_signal_cointegrator_1_complex_subunit_2_homolog_isoform_X4_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.167
 

Sequence

CDS
ATGGCCACCGGCCCGAAGATAGTACACAAGCAGTTCAACTCGCCCATCGGGTTGTACTCGCAGCAGAATATCAAGGAAACGCTCAACAAACACCTGAAAAACCTCGACAACGGATCTGTCGGAATCGACTTCAACAACCCGACAACGGATAAGCCAGCGAACTTAGCTAATTCCGCCGTCCTAAGAATGTTAGAAGAGGAAGAGCGTAACCGCAAAGGATACAGTCAGAAGAAAGTGGTGTGGCCTCCAGTACCCGAAACGAACGGATATCATAATCCACAACAGCAGAGTCCCGTGTACGACAACAACGCGCAACACTCCCCGTCTGCTCAGCCTCCCTATCAAAAGCAACCTCAATATCAACCCGAGCCCCAATATCAAGCTCAGCCTCCGCACTTCCAACCCCAATACCAACAGCCACAGTCCCAGCAGCCTCAGTATCCCCAGTCTCAGCCAGGGTTCTGTGAGGGACGTCGTCAAGAGCAAACTGGCCTGAGTAAGCTGATTCCCGTTGGGCCGGGAGTGACTGCGTCACCTTTGTCTCCCTCGCAGTACCGTGTGGGTCCGGCGTCCCCGGGCATCGCACCGCAACCCTTCAGGCCACAGCCAAATCGCTGGGCCCCCGTACCGGCCCCCCTCTCCCCTCAGACACCCGGATCGCAGCCGAGCTACACGCAGCAGATTTCCCCTCAATCTCAGTACTCATCGCAGTCTCCTTATTCGGAGCCCGCGTACCAGACCACACAGAGGCACTTCGAACCACCTCCATCAACCATCACTCTCCGTCCGCAACCTCCGGTTCACCAGAAACCATCCCCGGTGTTCGCTAGTCAACCGGCCGCTGCGTCATTTAAAGGAGGCGTCAACATGCGTGGAGATCAGAAGTGGCCGCCTCAATCGGTGAAGGAGGCTGTGGCTGCAGAAAACGAAGCCCGCCTCAAACTAGCCAAGGGTCCCGCCTGCAGACCGCGCAAGGTTAAAAAGGACTACAGCTCGTTCTTCGCGAAGCATGCCCTGAGCCACAATTACCCCGGCTACCGCGCGCCACCAGGCACCCAGCACTTCGAAGACTTCTCGGGCCGATCCTCATACTAA
Protein
MATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSAVLRMLEEEERNRKGYSQKKVVWPPVPETNGYHNPQQQSPVYDNNAQHSPSAQPPYQKQPQYQPEPQYQAQPPHFQPQYQQPQSQQPQYPQSQPGFCEGRRQEQTGLSKLIPVGPGVTASPLSPSQYRVGPASPGIAPQPFRPQPNRWAPVPAPLSPQTPGSQPSYTQQISPQSQYSSQSPYSEPAYQTTQRHFEPPPSTITLRPQPPVHQKPSPVFASQPAAASFKGGVNMRGDQKWPPQSVKEAVAAENEARLKLAKGPACRPRKVKKDYSSFFAKHALSHNYPGYRAPPGTQHFEDFSGRSSY

Summary

Pfam
PF15936   DUF4749
Interpro
IPR006643   Zasp-like_motif        + More
IPR031847   DUF4749       
ProteinModelPortal

Ontologies

Topology

Length:
364
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00035
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01969
outside
1  -  364
 
 

Population Genetic Test Statistics

Pi
244.183196
Theta
188.274377
Tajima's D
1.203084
CLR
0.289881
CSRT
0.713764311784411
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28467696 HFEPPPSTITIRPQPPVHQK 97.14 2e-16
26822097 QFNSPIGIYSQQNIK 100.00 4e-06
28467696 VGNIVDSNER 100.00 4e-06
28556443 APPGTQHFEDFSGR 100.00 5e-06
28556443 LIPVGPGVTASPLSPSQYR 100.00 7e-06
28556443 APPGTQHFEDFSGR 100.00 7e-04
28556443 VPTLINTAITQAR 100.00 7e-04
26822097 GIAQFMYDETGER 100.00 9e-04
27102218 MIEEEERNR 100.00 9e-04
28467696 APPGEGCPR 100.00 9e-04
28556443 HFEPPPSTITLRPQPPVH 100.00 9e-04
28556443 QFNSPIGLYSQQNIK 100.00 9e-04
28467696 PSPAAAPAEPASSGR 100.00 0.013
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