Gene

KWMTBOMO05009

Pre Gene Modal

BGIBMGA014408

Annotation

polyprotein_[Bombyx_mori]

Location

Bomo_Chr9(+):5431911-5433652      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.182 Nuclear   Reliability : 1.686

CDS

ATGGAAGGTATCACAGGAAAGCTTCAGATCGGCCTCCTAGATGGAAAAAACTGGGACACCTGGAAATACAAAGCCTTATGCTTACTACGCACCGTACCGTCGGCCCTAGAAGTAGTTGAAGGATCGTTCCAGGAGCCTACTCGTCCACCTACCGGATGCGGCGATGCTGAATTGGCGGCTTATCAACAACAAAAAGATAAGTTTGATAAAGCTGATGCCAGCGCTATCCTAATACTTACCACCAATATGCAAGAAGACACACTTCGAAAAGTTATGCGGTTCACTAAAGTACGTGATGTCTGGTTAGAGCTCCACAGGCTGTTCGACGGAACAAATGCGGACAAAACCTACAACCTGTGTATGAGTTTCTTCAGCTTTAAAAGGGATCAAGCAGACGACATAGCCACTCACATGTCAAAATTAAAGAACATTTGGACTGAACTGAATCAAGAACTCAAGAAGGACAGTAACCAAGAGCTACCCGAACTGCTACTTGTTTGTAAGATACTGGACACGCTTGATGATTCATACTTCAGCTTCAGAAGTAGTTGGCTCCTACTGCCCAAATCCAACCGTACTGTAGAAAACCTAACTAGTCATCTCTGCGCATTTGAAAGGGCACTGCAAGGTATCAACGTACCTTCGCATCATTCGGAAGCCCTGGTTTCGAATACGGAAAAGAAGAAGGACAAGAAGCTTAAATGCAACTACTGCCTAGGTATTGGCCACAGAGTACGCAACTGTCAAAAATGGATCCGTGACGGTAGACCTCCTAAGAGCCAAAATCCGACCCAGACAGCAACGCCTTCTACTTCAAAGACCGCTAATTTGTTACTCATGTCTTTAGAAGACAACGAAATCTTCACAGTTTCACGGGACAACGAGAACTGGTACATCGATAATGGTGCAACAAGCCACGTCACCAACAGAGCTGATTTTTTCCAAACCTACGAACATTTCAATGAGAACTACACTGTTACAACGGCCGCTGGTAATGAAGTCCGTGCCAAAGGCAAAGGAACAGTACAGCTCAGAGGATATGTTAACGGGAAACAAATCGACATCAGCCTGCAAGACGTCTGGTACGTTCCGGCCATAAGCAAGAACCTCTTCTCCATACTCGCACTTCACGACCGAGTCCCGAATAGCACTTTTTCATCCAGGACAACTGAATGCAACGTCATTGTCAACGGGAAAGTATGCTTAATAGGGAAGAGACAAAAACAAGGTGGCTTATATCGACTGGAAGTAAAACCCGTACTGCCAGAAAAACCACCCGAAGTCTTTGCAACTACAGCAACGATGCAACTGTACCACGAGAGACTCGCTCACCAAAATAAAAGACACGCAAGAGCGACGATCCAACGCGAACTAGGTCTAAACCTGCCGATAAATAAAGAGACCTGTGAAGGCTGCATCTTTAGAAAGGCGCATCGACTTAAATTCGGTACAAGAACCCGAGCTACCGCGCCCGGAGAAATTGTACACACCGACGTTTGCGGACCGTTTCAATCTAGCTTCTCAAGCTATAAGTACTACGTTCTGTTCAAAGACGACTTTACTGGCTATCGTATGGTGTACTTCATACGCAATAAGTCGGACACACCATAA

Protein

MEGITGKLQIGLLDGKNWDTWKYKALCLLRTVPSALEVVEGSFQEPTRPPTGCGDAELAAYQQQKDKFDKADASAILILTTNMQEDTLRKVMRFTKVRDVWLELHRLFDGTNADKTYNLCMSFFSFKRDQADDIATHMSKLKNIWTELNQELKKDSNQELPELLLVCKILDTLDDSYFSFRSSWLLLPKSNRTVENLTSHLCAFERALQGINVPSHHSEALVSNTEKKKDKKLKCNYCLGIGHRVRNCQKWIRDGRPPKSQNPTQTATPSTSKTANLLLMSLEDNEIFTVSRDNENWYIDNGATSHVTNRADFFQTYEHFNENYTVTTAAGNEVRAKGKGTVQLRGYVNGKQIDISLQDVWYVPAISKNLFSILALHDRVPNSTFSSRTTECNVIVNGKVCLIGKRQKQGGLYRLEVKPVLPEKPPEVFATTATMQLYHERLAHQNKRHARATIQRELGLNLPINKETCEGCIFRKAHRLKFGTRTRATAPGEIVHTDVCGPFQSSFSSYKYYVLFKDDFTGYRMVYFIRNKSDTP

Uniprot

B3Y003   A0A1E1WKD7   A0A087T2K3   A0A087SYT1   A0A2J7PN24   A0A1Y1KNM9   + More
A0A1Y1K3Q7   A0A0V1M1K0   A0A0V0Z7R7   A0A1Y1LRT7   A0A0V1B5K0   A0A0V1B5A2   A0A0V1L945   A0A0J7K744   A0A0V0TK25   A0A0V0TK20   A0A0V1NHV8   J9LCG1   A0A139WFV5   A0A0V1HEX2   A0A2S2P896   A0A1Y1MYL8   A0A1Y1K2V0   A0A1Y1N6B6   X1WMG8   A0A1Y1MYL6   A0A1Y1NHZ0   A0A151ITN2   A0A0V0WE00   A0A0V0WA51   A0A0J7K9V7   A0A0V0W669   A0A1Y1KZM0   A0A0V1G2I5   X1XQX4   A0A2J7QWT7   A0A085N6E0   A0A0V1KG52   A0A0J7K763   X1XSG1   A0A0V1EYB7   A0A0J7N8C0   K7JBX1   K7J7F1   A0A0V1DTZ3   A0A0P5PQ39   K7JXE5   A0A1Y1NEM6   A0A1Y1L0K1   A0A0J7K2P0   A0A0J7K717   A0A0A9YZ05   A0A0A9WFQ0   K7JBT3   A0A085MSN1   A0A0J7K689   A0A1Y1LCN3   A0A0L0CMY6   K7JAW3   A0A0N5E2R3   A0A2A4JFW7   A0A0J7K651   X1WT66   A0A0J7KDE2   A0A1Y1KR09   A0A151J9U8   A0A0V1IPN2   A0A0J7KBA1   A0A0P6B8Y5   A0A0P6APU8  

Pubmed

28004739    18362917    19820115    24929829    20075255    25401762    + More
26108605   

EMBL

AB378753    BAG68376.1    GDQN01003581    JAT87473.1    KK113102    KFM59342.1    + More
KK112589    KFM58020.1    NEVH01023958    PNF17740.1    GEZM01078128    GEZM01078127    JAV63002.1    GEZM01099106    GEZM01099105    JAV53487.1    JYDO01000312    KRZ65659.1    JYDQ01000330    KRY08494.1    GEZM01048830    JAV76369.1    JYDH01000102    KRY32233.1    KRY32232.1    JYDW01000105    KRZ55879.1    LBMM01012672    KMQ86059.1    JYDJ01000235    KRX39370.1    KRX39371.1    JYDM01000206    KRZ83588.1    ABLF02020242    ABLF02020246    ABLF02042026    KQ971352    KYB26731.1    JYDP01000075    KRZ09245.1    GGMR01012789    MBY25408.1    GEZM01017328    JAV90763.1    GEZM01098859    JAV53706.1    GEZM01013586    GEZM01013585    JAV92450.1    ABLF02057951    ABLF02066512    GEZM01017329    JAV90762.1    GEZM01007166    GEZM01007165    JAV95327.1    KQ981003    KYN10396.1    JYDK01000164    KRX73801.1    JYDK01000219    KRX72067.1    LBMM01011114    KMQ87021.1    JYDK01000253    KRX71152.1    GEZM01073374    JAV65135.1    JYDT01000007    KRY92484.1    ABLF02042030    NEVH01009420    PNF33053.1    KL367545    KFD65036.1    JYDV01000001    KRZ46164.1    LBMM01012449    KMQ86217.1    ABLF02042028    JYDR01000003    KRY78530.1    LBMM01008433    KMQ88885.1    AAZX01004352    AAZX01012276    JYDR01000237    KRY65040.1    GDIQ01125974    JAL25752.1    AAZX01000127    GEZM01005616    JAV96038.1    JAV65136.1    LBMM01016284    KMQ84481.1    LBMM01012696    KMQ86054.1    GBHO01008809    JAG34795.1    GBHO01038256    JAG05348.1    AAZX01010628    AAZX01013403    KL367684    KFD60227.1    LBMM01012772    KMQ86003.1    GEZM01063091    JAV69316.1    JRES01000163    KNC33708.1    AAZX01023229    NWSH01001522    PCG70967.1    LBMM01012830    KMQ85968.1    ABLF02016448    LBMM01008998    KMQ88473.1    GEZM01078105    JAV63008.1    KQ979396    KYN21742.1    JYDV01000213    KRZ24707.1    LBMM01010133    KMQ87653.1    GDIP01019956    JAM83759.1    GDIP01039936    JAM63779.1   

Proteomes

UP000054359    UP000235965    UP000054843    UP000054783    UP000054776    UP000054721    + More
UP000036403    UP000055048    UP000054924    UP000007819    UP000007266    UP000055024    UP000078492    UP000054673    UP000054995    UP000054826    UP000054632    UP000002358    UP000037069    UP000046395    UP000218220   

PRIDE

B3Y003   

Pfam

PF13976   gag_pre-integrs        + More
PF07727   RVT_2
PF00665   rve
PF00098   zf-CCHC
PF13961   DUF4219

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR012337   RNaseH-like_sf       
IPR013103   RVT_2       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR025314   DUF4219       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

B3Y003   A0A1E1WKD7   A0A087T2K3   A0A087SYT1   A0A2J7PN24   A0A1Y1KNM9   + More
A0A1Y1K3Q7   A0A0V1M1K0   A0A0V0Z7R7   A0A1Y1LRT7   A0A0V1B5K0   A0A0V1B5A2   A0A0V1L945   A0A0J7K744   A0A0V0TK25   A0A0V0TK20   A0A0V1NHV8   J9LCG1   A0A139WFV5   A0A0V1HEX2   A0A2S2P896   A0A1Y1MYL8   A0A1Y1K2V0   A0A1Y1N6B6   X1WMG8   A0A1Y1MYL6   A0A1Y1NHZ0   A0A151ITN2   A0A0V0WE00   A0A0V0WA51   A0A0J7K9V7   A0A0V0W669   A0A1Y1KZM0   A0A0V1G2I5   X1XQX4   A0A2J7QWT7   A0A085N6E0   A0A0V1KG52   A0A0J7K763   X1XSG1   A0A0V1EYB7   A0A0J7N8C0   K7JBX1   K7J7F1   A0A0V1DTZ3   A0A0P5PQ39   K7JXE5   A0A1Y1NEM6   A0A1Y1L0K1   A0A0J7K2P0   A0A0J7K717   A0A0A9YZ05   A0A0A9WFQ0   K7JBT3   A0A085MSN1   A0A0J7K689   A0A1Y1LCN3   A0A0L0CMY6   K7JAW3   A0A0N5E2R3   A0A2A4JFW7   A0A0J7K651   X1WT66   A0A0J7KDE2   A0A1Y1KR09   A0A151J9U8   A0A0V1IPN2   A0A0J7KBA1   A0A0P6B8Y5   A0A0P6APU8  

KEGG

105841853    no KO assigned | (RefSeq) uncharacterized LOC105841853

GO

GO:0003676   GO:0015074   GO:0000943   GO:0008270   GO:0000387   GO:0000398   GO:0005685   GO:0003677   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR11439  

Length:

536

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00608

Exp number, first 60 AAs:

0.00033

Total prob of N-in:

0.00100

outside

1  -  536

 

 

Pi

8.403482

Theta

12.393585

Tajima's D

-0.952177

CLR

24.295354

CSRT

0.147492625368732

Interpretation

Uncertain