SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05001
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 1.548
 

Sequence

CDS
ATGATGGACAATTGTGCAAAGTTAGTACCCCAGGAGGGTACCGCCCGCGAGTCGGGCGGAGAATCCCTCCGTGCTTCCACCTCAGTGGAAGCACGCTGCCCCACGTATTCTGGGGGGGGCAACAATTGTCAGGATGAAGGAGGCTGTGCGACGGGCAGCGGAATTCCCGTCGAACCGAGGCGCTCCCCGATCGCCGGCTCGATGCGCTCTGCGCTCGCCAGCGACTCGGGTGCAATCAACCCCACCAGACCATCGGTGGGGAAAAAGAGGGGGCGAAGAAAAACCCCATTGCCATCTTCCAATGACGGCAGCGCGTCATCCTCCGGCACTGAGGTGCCGGAAAAGACGATGGCCATCGAGGAGGTGACTCCGATGGTTTCGGGGTCTGCTGCTGCGTCGGAAGACGCGATGCCTGCTCCCCAGTGGGCACCAGTAAGGAGGAGGGGCGCGGTGTCACCGGCGACGTCGGTGGAGTCGATGTCGACGTCGGCTGCGTCCCTGGCTAGCGGGGACGAGACGTTCCGGGACCTCGACCTTGCGCTTGTTAATTTGGGTAAGCTGCTGTCGACTGTGGCTGCCAAGGGCGCCGAGCCAGGCAGCAGTTACCGGAAAAGACTCCGGGAGGCAGCCGCCATGGTTAAAACGAGGCTGATCCCCACCATGTCCAAGCTCCATGACTTGGTAGCGAGCCGAGAGGTGGAGAGCAAAGGTCACGTCTCTCAGTTTGACTCCAGAGAGAGTCACATCCCGGGAGACACCCCGGCATTGCGGGGAGGGACTCCCCTGTTGCCGAGGCCCGCGCTGCCATTCACTGGGCCCCCCGCGGGGGCGATGGATACTACTGTGCACTTGCGGTCCGCGATGAGTGCGGTGGCACCCATGCCAGAGCCCACCTCCGAGGCCCCTGTTTCGCTGGCGCCTACTCCTGCGATCCCTCGCCCTCCACGAAGGGTTGAGCTAAGGCCTGCGCCACCTCCGCGGATATCGGCCGCCCCTGCATCTGCACGTAGAGGAAAGCTAAACCCTACGCCAGCGCGGGCTGAGGACATCCGTTCGCCACTGGCGAGGATGGTGGATGAGTGGCCAGCGCTACCGCGGCCCAGGCCTGCAGAGCCGCCTCTTTCGCCCTCGCGTGCTGCGGGGTCACAGAGGCCATACAACATGGCTGCTGGGACGGAAGAAGTAGACCACTCCCTCCCAAGCAGAGAGGAAATGGTGGCCTGCATTTCGCGGGCGGTGGCGGTTGAGGTTGGCAAGCACTTTGCCAGCCTCGAGAAGATACTCCGCTCCTCCAATGGCTCCGGAGACTGTGTCCCGGCGCCAACAAACGCCGCCGTCCCGCGGGGCCAGGCCGCCCGGTCGACCTCCACCCCCACCTCATCCACAAGGTTGGCACGACGTGGAGGCCGCAATCAAAATAACAGGGGTACGGGTGCCCAAAATCCTGCCCTGAAATCCCAGCCCCGTCCCCTTCCTCCTCCCCCGTCAAGCATGGACGATGGTTGGACGGAAGTGGTGAAGCGGGGCAAGAAAGGTAGGCAACAGACAGAGGCTCTGGCAGCTCCCAGAGGGGGTCGAGCGCTGACCGCTGCAGCCCGAAGCACAGAGCTGGTGGCCGTGGCTGCTCCTCGCGAGAGTCGAGCACCGGCCACCAACAAGAAGCAGAACGCCAAGAAGAAGAAGACGCGCGCAGCGCGGTCGGCTGCCGTCGTAGTGACGTTGCTGCCAGCCGCCGCCGAAAAGGGCCTCACCTATAATGAGGTGATGGCCCAGGCGCGCGCGGCCGTCAACTTAGCAGAAATCGGGGCAGAGGAAGGCCTCCGCTTCCGGCATACCGCCAATGGAGCGAAGCTGCTGGAGTGTCCCGGTGCGGATAGTTCTGGTGTCGCAGACAGACTAGTGGCGACGCTCCGCGTGGCGCTGCCGGAGAATGAGGTGCGCGTGCACAGGCCGGTGAGGATGGCCGAGATCAGGATCACCGGCCTGGACGACTGCGCCACCAAGGAGGAGGTGGCAGCTGCGATAGCCGCCCAAGGTGGATGTGCCTTGGAGAGCGTGACCGTGGGCGAACTTCGCTCAGGATACTCCGGAGCTAGGTCAGCGTGGGCGCGCTGCCCTGTGGAGGCTGCCACTTCCTTGGCTACTCCTCCGCCGGGAAGGTCAATGGGGGATCCGGGGAGACTGCGCGTGGGCTGGATAGCGGCCCACGTGCGTCTCCAAGAACCACGTGCCTGGCGATGCCTCCGGTGCTTTAGCACCGGGCACGGCCTCGCTAGGTGCACCAGCTTAGTTGACCGCAGCGGTCTATGTTTCCGCTGCGGCCAACCGGGTCATAAAGCGGCGTCCTGCACGGCCGCCCCGCACTGCGCTCTGTGCGCTGCGGCTGGGCGTAGGGCAAACCACCGGGCGGGAGGCAAGGCTTGCTTCCCGTCCGGTGTTAATACTGAACGCAACCGGCGCCGAAAATCAAGGCGCCGAGGAGGGGGCGATGGATGTGGTTCAACAGTAATGGACCGCATCTATCGCTTCCTCCAAGGAAACCTGAACCACTCCGCCAGAGCTCAGGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCGGCAAATGATTGCTGGTTCGGGGACGATGGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGACGATCCCCCCCTTGGCGATGGTGACCAGGGGCCAAGGGTTCGTCGCGGTGCAGCTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAATAGGCCTACTGTCGAGTTCGGGCATTTCCTGGACGGAATCGGGGCGATTGCTCGCCGCCTCGCTCCTCGTCCAGTGATTCTCGCGGGGGACCTCAACGCGAAGTCTGTCGCATGGGGCTCCCCCCGCTCGGACGCTCGTGGTAGGCTGTTGGAGAGGTGGGCGAACGTGACCGGCCTCTATTTGTTGAATAGAGGGTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTGTTGTGGACGTTACGTTCGCAAGCCCGGCCATCGCACGCCGTATCCGCGACTGGAGAGTTTTGGAGGGGGCGGAGACACTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGCCCACGGGGACCACCCCCGTGGTGCGTCCCGGTCATTCCCTAAGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTACGGTGGCGGCGTGGGCGCCCATGCGTCCACACCCAGTTGAGGTCGAGGACGAAGCGAGGTGGTTCCGGGACACGATGCGTCGCATCTGTGACGTGTCGATGCCCCGGATTAGCCCTCGACCTCCCAATCGCCAAGTGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCCAGTGCGCGAGGCATCGCCGCCGTCGCTTGCCGCGGCGCAACGATCCGGTGGCGTTCGCGGTGGTAGAGGCCCAGCTGTACGGCGCATTTCGCGTCGCACAGAGGGCGTTGCAGCTGGCCATCAGAAGAGCCAAGGACCAACACATGCAGAGTCTCCTGGAGACGCTGGATGAGGATCCGTGGGGGCGACCCTATCACATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCAATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGGGCAGGGGGGATTTGTCGCTCCCGCTATGGGCGCGCCGCCGGAATACGACGGCGACGCCCCTGCTGAGGTGCCCCATATAACAGGGGCGGAGCTCCGTGTGGCAGTACGCAAAATGTGCGCAAAGGACACTGCACCTGGCCCGGACGGCGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGGCTTTATAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTTGTGCTGTTGAGAAAGCAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGTTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGATCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTAATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGGTCGTACATCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGAGCTAACCTTCGTGCCCGGGCGTGGCGCGTCCCAGCCCCAGTGTGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCTACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAGCGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCTAGCCCTGGCCCTCTAA
Protein
MMDNCAKLVPQEGTARESGGESLRASTSVEARCPTYSGGGNNCQDEGGCATGSGIPVEPRRSPIAGSMRSALASDSGAINPTRPSVGKKRGRRKTPLPSSNDGSASSSGTEVPEKTMAIEEVTPMVSGSAAASEDAMPAPQWAPVRRRGAVSPATSVESMSTSAASLASGDETFRDLDLALVNLGKLLSTVAAKGAEPGSSYRKRLREAAAMVKTRLIPTMSKLHDLVASREVESKGHVSQFDSRESHIPGDTPALRGGTPLLPRPALPFTGPPAGAMDTTVHLRSAMSAVAPMPEPTSEAPVSLAPTPAIPRPPRRVELRPAPPPRISAAPASARRGKLNPTPARAEDIRSPLARMVDEWPALPRPRPAEPPLSPSRAAGSQRPYNMAAGTEEVDHSLPSREEMVACISRAVAVEVGKHFASLEKILRSSNGSGDCVPAPTNAAVPRGQAARSTSTPTSSTRLARRGGRNQNNRGTGAQNPALKSQPRPLPPPPSSMDDGWTEVVKRGKKGRQQTEALAAPRGGRALTAAARSTELVAVAAPRESRAPATNKKQNAKKKKTRAARSAAVVVTLLPAAAEKGLTYNEVMAQARAAVNLAEIGAEEGLRFRHTANGAKLLECPGADSSGVADRLVATLRVALPENEVRVHRPVRMAEIRITGLDDCATKEEVAAAIAAQGGCALESVTVGELRSGYSGARSAWARCPVEAATSLATPPPGRSMGDPGRLRVGWIAAHVRLQEPRAWRCLRCFSTGHGLARCTSLVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRANHRAGGKACFPSGVNTERNRRRKSRRRGGGDGCGSTVMDRIYRFLQGNLNHSARAQDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDATIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLDGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLLERWANVTGLYLLNRGSVATCVRWQGESVVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADAHGDHPRGASRSFPKWALKRLNKELLMEASTVAAWAPMRPHPVEVEDEARWFRDTMRRICDVSMPRISPRPPNRQVYWWSPEIAQLRVECVRARRQCARHRRRRLPRRNDPVAFAVVEAQLYGAFRVAQRALQLAIRRAKDQHMQSLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQGQGGFVAPAMGAPPEYDGDAPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKQGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLIGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEDRSVTCTGHGGVVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARAWRVPAPVWTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGSDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLALALAL

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
SUPFAM
SSF57756   SSF57756        + More
SSF56219   SSF56219       
Gene 3D
PDB
1WDU     E-value=4.21272e-13,     Score=187

Ontologies

Topology

Length:
1868
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.16871
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00006
outside
1  -  1868
 
 

Population Genetic Test Statistics

Pi
118.044767
Theta
115.102792
Tajima's D
0
CLR
2.991029
CSRT
0.369481525923704
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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