Silkworm Genome Informatics Database

Gene

KWMTBOMO04989

Pre Gene Modal

BGIBMGA008108

Annotation

TRAS3_[Bombyx_mori]

Location

Bomo_Chr9(+):4693011-4698405 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.69 Nuclear Reliability : 1.178

CDS

ATGTTCGGCCATAGAACGCCACCAACAAAGCGCAGCAGCGCAGGTGATAGATCAAACAGTGGTACTGACCGGGTAGTCCTGAGGCAGAGTAAGGAGTGGGAGGAGGGGAGACCCAGTCCGGTAACTGGCTCCCCCCCTGAACAATCTGGGGCGCAAACGACCACGATAGCCACTAGGACAGGGACTGTATCGCCAAAAGGCGACACTCAACTGACTCCGGGTACTTCCAGTGCACCCGCGCGAGTGCCGCTCAAACCTAGGACGGCACTGGCGCGTACGCCCCCCGTGTCCAGCCACCCGGTGGCTATAAGTGAGCCGGGACCGCCCTCCCCTTCCACAACGATAAAAGCCTCGCGATTAAAACAAGCGAGAGCCAGCGTTACCAGGGCAAAAACAAAAATCGGTCAATCGCGGAACCTGAGGAATGAAATCAGGGAGGATGTAACGAATGCGATTGATGAGCTATACACAATTATAAAGGCCTTGGACGCAGAGCTAAGAGGACTAGGTGGTCTAAATACACAAACAGCAAGGCTAGAGCTTTCTCCTGCCCCGACCAACGCCGGCTGCGTCGATAGGGACATGAGCGATAAGCTCTTGGGGAAGCTGGAGGAGCACTCCGTCCTCTTAAAAGAGAACGCACGCAGTCTGGAGCTGCTGAGGAGCGCGGTGGAAACGCAGACGGAGAGCGTCTCAAAAATGACGTACGCGAGTGTAGCGGCAGGACCCCCAAGTGGGCGCCTCCCAGGGAGGGCAGCACTGCACTCCGTCGTCATTACCTCGAAGGAGGCCTCGGACACCGGGGACGAGGTCATGGACAAGGTGCGCAGGGCAATCGACGCAAAGGGGGGGGGAATAGAAATAGAGAGGGTTAGGAAGGGGAGAGACAGAAAGATAATTATGGGGTGTAGAACGGTGGAGCAACGGGAAAAAATTAAAGAGAAAATAAATAAAGCAGGAAAGCACCTCGTCGTTGAGGAAGTAAAAAACAAGGACCCCATGCTGGTTCTGAGGGGAGTCCTAAGCGTCCACACGGACGAGGACATTTTGGAGGCCCTGAAGAACCAAAATGGGGATGTTTTTCGCGGCCTCAGCGACGGAGAGGCTAGGGTTGGGGTAAAGTTTAGGCGTCGTGCCCGAAACCCGCACACAAATCACATCGTCTTGACAGCGTCTCCGGTAGTTTGGAGGAGAGCGCTGGAGAAGTCTCGCCTCTGGGTCGACATGCAGGCGGTGCCAGTGGAGGACCAGTCGCCGCTAGTGCAATGCACTCGCTGCCTGGGATACGGGCACGGCAGGCGCTTCTGTAAGGAAGCAGTTGATATCTGCTGCCACTGTGGTGGCCCACATCTCAGGGCAGAGTGTCCGCACTGGCTGGCGGCGGAAGAACCGCAGTGTAGGAACTGCGTGTTGGCCAAGATGGCACACTGCGTCATGCCAACGGAAAGGACTCCCCACAGGATACTCCAGGCAAATCTACAAAGACAGAAATTGGCAACTACCGAGCTGATGTTGGAGGCTACTAAACGGCAAGCAATCGCTGCTCTTCTGCAAGAGCCGTATGTGGGTGGCAATAAAAGTATGAGTGGTGTCCGGGGCGTAAGGGTCTTCCAGAATACCAGGATCGAGGAGGGCACTGTAAAAGCGGCAATAGCCGTCTTTGACGCTAATATTAGCGTTATACAGTACCCAGAACTCACCACCAATAACATCGTGGTGGTGGGGATTCGTACTGGTACCTGGGAAATCACGCTGGCATCGCTCTACTTCGAGCCGGACAAGCCTATAGAACCCTTTCTCGACCACCTAAGGAAGGTAGGAAAAGCCACCAACATCATCATCGGTGGCGATGTCAATGCCAGGAGTGTCTGGTGGGGAGGACCATCGACCAACAGCAGGGGCGAAGCGTTGCTGGGGGCCCTCGACGAGCTCGGTCTCCATGTCCTCAACCAAGGCGAAATTCCCACATTCGACGTAATCCGAGGGGAGCGACACCTGACGAGCTATGTCGATATCACGGCATGCTCACCGGATGTACTCGGCCTGGTGGACGATTGGCGAGTGCTGGAAGACCTGACGAGTTCCGACCATAATGGTATAGAGTTCAAAATTAATTTACACAAGTCCAAAGGACATACAGTACACAGAACCACACGCATATACAACACGAAAAAGGCAAATTGGGCCCAGTTTCGTGTGAAACTGGGCGAATTACTGCTGAGCACTACACTGAACAGGGACGCAATAAATAATATTAACACTATACAGGAAATTGAACAAATCACAGTAACATACACTAACACTATTACAAACGCCTGTACACACACAATACCACAAAAGAAAAATTTGGAGAAATTTTCTGTGCCATGGTGGTCGGAGGAGCTCGCCGGGTTGAAACGGCGTGTTGTCACCAGAAAGAGGAGGATCCGATGTGCCGCACTGGTCCGGAGGCCGAGGGTGGTGCAAGAGTACCTGGAGGAACGGGCAAAATACCGGGCTGCGATAAAAGAGGCCCAGATCGCAAGCTGGAAGGGGTTCTGCGAGAGGCAGGACCGCGAAGGCATGTGGGAGGGGATTTATCGGGTGATAGGCAGGGTTTCGAGACGGGAGGAAGACATACCCATGGAGCGGGAAGGGATAGTGCTGGACGCGGATAGTTCAGCCACGTACTTGGCTGAAACGTTTTATCCGGAGGACCTTACCGATTTGGACGATCCCGGGCATGGCGAGACGAGGAGGCGAGCCGCTGAACTAGATAGCGACAGTGGCGGCGCTCGAGACCCCCCGTTCACCATGCACGAGCTCGACAGATCGGTGAGGTCCTTCAACCCCAAGAAGGCTCCAGGCGCCGATGGATTGACCGCCGACATTTGTAAGGAAGCGGTCAACAGTGATCCCGAGCTGTTCCTGGCGCTCGTAAACAAATGCCTCGAGCTCCGTTACTTCCCGAAGGTGTGGAAGGCGGCCACGGTCATCATACTCAGAAAACCTGGCAAGAACAACTACGCCACCCCCAAAGCGCACAGACCGATTGGCCTTTTGCCTGTGCTGGGGAAGGTATATGAGAAGATGATAGTGGCACGTCTAAAGTACCATATTTTGCCGAGCATGAGCGCTCACCAATATGGCTTTATGCCACAGAGGAGCACCGAAGACGCCCTATATACCCTGTTGGAACGCATTAGAGAAAAGCTTCTTGACAAGAAACTGATCCTAATGGTCTCGCTGGATATAGAGGGGGCCTTCGACAGCGCCTGGTGGCCGGCCATAAAGGTGAGGCTCGTCGAGGAGTCGTGCCCGGTTGGTATACGGGGAGTAATGAATAGTTATATGAGCGACAGGACGGTTGGAGTCCGCTACATGGGCGCCGAACATCTGAGAGCCACGGGAAAAGGATGCGTCCAGGGCTCCATAGGAGGCCCTATCCTGTGGAACCTCTTGCTCGATCCTCTGCTTAAGGGACTCAGTACCAGAGGGGACTACGTCCAGGCGTTTGCTGACGACGTTGTCCTCCTCTTCGACGGGGATACAGCGATGGACGTTCAGAGACGTGCCAATGCCGCCCTCGAGTATGTTCGGGCGTGGGGTGTCATGAACAAGCTGAAATTCGCTCCGCACAAAACCTGTGCGATGGTAATCACGCGGAAGCTGAAGCATGACACCCCGCGCCTGAGCATGGGCGGGGTAGACATTGGCATGTCTAAGGAGGTACTGTTGTTAGGGCTCACCATCGACCATAAACTTACATTTAACACCCATGTTGCCAATGTTTGCGCTAAAGCCGCAAACCTATACAAAAGGCTAACCAGGGCAGCCAAAGTTGGCTGGGGTCTGCACCCCGAAGTTATCAAGACCATATACATCGCAGTGGTTGAACCCGTGATCCTGTATGCCTCGAGCGCGTGGGCGCCGGCCGCAAACAAACTGGGAGTGCGGAAGCGCCTCAACGCGGTCCAGCGTAGCTTCGCACAGAAGCTCTGTCGAGCCTACCGAACGGTATCCCTGAACTCAGCACTGGTGCTGGCAGGGGTGCTCCCCCTTGACCTACGCGTACGCGAGATGGCCTCGCTATACGTGGCCAAGAGGGGGGCGCATCTGCCGGTGCTGGGAGACAGGGATATCGAGCGGGTGGCATCGGCACTGGAGAGGCCTCATCCAGCGGAACAAGTTGGGATGGAGCTACGAAGCCTGGTAGACGAGGAGCAATACCTCGAACATCGAGGATATGAGGTGCGTATATTTACGGACGGGAGCAAGATTGAGGGCAAGGTCGGGGCCGCGCTATCCATCTGGACTGGCGAGGCCGAAGCCAAAACTCTCAAACTTGCTCTCTCGCCCCACTGTACCGTCTACCAGGCAGAGCTCTTGGCCCTTTGTGAAGCTGCAAATGAGATCAGCCGGCGAAAAGAGAACGTTTTCGCCATCTTCAGCGACTCCATGGCGGCCCTTCAGACAGTGGCTGACCCGGATTCCCTTCACGTCCTTGCGGTCCGGATGAGGGGCGCTCTTAGTCACTGCAAAACGCAGGGCAAGAGCGTCTCCTTGTTTTGGATTAAGGCTCACGCGGGACTTGAGGGGAATGAGAGGGCCGATGCCCTGGCTAAAGCGGCCGCCCTGAGGTTGAAGAAGAAACCCAACTATGACCGGTGTCCGGTCTCATTCGCGAAGCGTGTAATCCGCATGGACACGCTCGCCGAATGGGATCGGAGGTACAGCGCCGAACAAACGGCCTCAGTCACCAAGCTGTACTTCCCAATCGCGTCCGAGGCATACAGGATAATCAGAAATATCGAAATGACCAAGGAGGTAGCACAGGCCTTCACAGGGCATGGTGGGTTCTCCGAGTACTTGGCCAGGTTCAAGTGCAAGGAGAGCCCAGCATGCATCTGTGACCCTTACGTCGACGAGTCAGTGGCCCACGTGCTTCTGGAGTGTCCAGTCTTTGGCTCAGCACGATTCGACTTGGAGGTCGAACTGGGCCAAAGACTCCATGCGCGAAAACTCCCCAATTTAATGAAAAAAACCTGTGCGAGGAACTTGTTCCTAAAATATGCTATAAAAATTATAAAGGAGGTTAATAAAAGAAATAGAACATAA

Protein

MFGHRTPPTKRSSAGDRSNSGTDRVVLRQSKEWEEGRPSPVTGSPPEQSGAQTTTIATRTGTVSPKGDTQLTPGTSSAPARVPLKPRTALARTPPVSSHPVAISEPGPPSPSTTIKASRLKQARASVTRAKTKIGQSRNLRNEIREDVTNAIDELYTIIKALDAELRGLGGLNTQTARLELSPAPTNAGCVDRDMSDKLLGKLEEHSVLLKENARSLELLRSAVETQTESVSKMTYASVAAGPPSGRLPGRAALHSVVITSKEASDTGDEVMDKVRRAIDAKGGGIEIERVRKGRDRKIIMGCRTVEQREKIKEKINKAGKHLVVEEVKNKDPMLVLRGVLSVHTDEDILEALKNQNGDVFRGLSDGEARVGVKFRRRARNPHTNHIVLTASPVVWRRALEKSRLWVDMQAVPVEDQSPLVQCTRCLGYGHGRRFCKEAVDICCHCGGPHLRAECPHWLAAEEPQCRNCVLAKMAHCVMPTERTPHRILQANLQRQKLATTELMLEATKRQAIAALLQEPYVGGNKSMSGVRGVRVFQNTRIEEGTVKAAIAVFDANISVIQYPELTTNNIVVVGIRTGTWEITLASLYFEPDKPIEPFLDHLRKVGKATNIIIGGDVNARSVWWGGPSTNSRGEALLGALDELGLHVLNQGEIPTFDVIRGERHLTSYVDITACSPDVLGLVDDWRVLEDLTSSDHNGIEFKINLHKSKGHTVHRTTRIYNTKKANWAQFRVKLGELLLSTTLNRDAINNINTIQEIEQITVTYTNTITNACTHTIPQKKNLEKFSVPWWSEELAGLKRRVVTRKRRIRCAALVRRPRVVQEYLEERAKYRAAIKEAQIASWKGFCERQDREGMWEGIYRVIGRVSRREEDIPMEREGIVLDADSSATYLAETFYPEDLTDLDDPGHGETRRRAAELDSDSGGARDPPFTMHELDRSVRSFNPKKAPGADGLTADICKEAVNSDPELFLALVNKCLELRYFPKVWKAATVIILRKPGKNNYATPKAHRPIGLLPVLGKVYEKMIVARLKYHILPSMSAHQYGFMPQRSTEDALYTLLERIREKLLDKKLILMVSLDIEGAFDSAWWPAIKVRLVEESCPVGIRGVMNSYMSDRTVGVRYMGAEHLRATGKGCVQGSIGGPILWNLLLDPLLKGLSTRGDYVQAFADDVVLLFDGDTAMDVQRRANAALEYVRAWGVMNKLKFAPHKTCAMVITRKLKHDTPRLSMGGVDIGMSKEVLLLGLTIDHKLTFNTHVANVCAKAANLYKRLTRAAKVGWGLHPEVIKTIYIAVVEPVILYASSAWAPAANKLGVRKRLNAVQRSFAQKLCRAYRTVSLNSALVLAGVLPLDLRVREMASLYVAKRGAHLPVLGDRDIERVASALERPHPAEQVGMELRSLVDEEQYLEHRGYEVRIFTDGSKIEGKVGAALSIWTGEAEAKTLKLALSPHCTVYQAELLALCEAANEISRRKENVFAIFSDSMAALQTVADPDSLHVLAVRMRGALSHCKTQGKSVSLFWIKAHAGLEGNERADALAKAAALRLKKKPNYDRCPVSFAKRVIRMDTLAEWDRRYSAEQTASVTKLYFPIASEAYRIIRNIEMTKEVAQAFTGHGGFSEYLARFKCKESPACICDPYVDESVAHVLLECPVFGSARFDLEVELGQRLHARKLPNLMKKTCARNLFLKYAIKIIKEVNKRNRT

Uniprot

Q9BLI5 A0A1W7R9Y4 A0A0K1IK29 A0A087TAD8 A0A087UHT1 A0A0K1IK14 + More
K7JMI9 A0A0J7KTH2 A0A142LX31 A0A142LX39 U5EG91 A0A142LX24 A0A224XIB2 U5ERW4 A0A224XH41 U5EW32

Pubmed

11319268 20075255 25527032

EMBL

AB046668 BAB21511.1 GFAH01000444 JAV47945.1 KP771711 AKU04648.1 + More
KK114278 KFM62077.1 KK119855 KFM76920.1 KP771712 AKU04650.1 AAZX01008070 LBMM01003366 KMQ93606.1 KU543676 AMS38357.1 KU543680 AMS38365.1 GANO01003539 JAB56332.1 KU543672 AMS38350.1 GFTR01008645 JAW07781.1 GANO01003538 JAB56333.1 GFTR01008646 JAW07780.1 GANO01003141 JAB56730.1

Proteomes

UP000054359 UP000002358 UP000036403

PRIDE

Q9BLI5

Pfam

PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF00078   RVT_1
PF00004   AAA
PF17862   AAA_lid_3
PF16725   Nucleolin_bd

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR012337   RNaseH-like_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR036397   RNaseH_sf
IPR002156   RNaseH_domain
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR003959   ATPase_AAA_core
IPR027417   P-loop_NTPase
IPR003960   ATPase_AAA_CS
IPR031996   NVL2_nucleolin-bd
IPR041569   AAA_lid_3
IPR003593   AAA+_ATPase
IPR038100   NLV2_N_sf

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098
SSF57756   SSF57756
SSF52540   SSF52540

Gene 3D

3.30.420.10 3.60.10.10 1.10.10.2010

ProteinModelPortal

Q9BLI5 A0A1W7R9Y4 A0A0K1IK29 A0A087TAD8 A0A087UHT1 A0A0K1IK14 + More
K7JMI9 A0A0J7KTH2 A0A142LX31 A0A142LX39 U5EG91 A0A142LX24 A0A224XIB2 U5ERW4 A0A224XH41 U5EW32

PDB

1WDU E-value=5.34824e-74, Score=712

KEGG

105842369 no KO assigned | (RefSeq) uncharacterized LOC105842369

GO

GO:0004523 GO:0003676 GO:0008270 GO:0005524 GO:0004743 GO:0006096 GO:0030955 GO:0008026 GO:0003677 GO:0005515 GO:0016742 GO:0003824

Length:

1698

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.477100000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1 - 1698

Pi

0

Theta

0

Tajima's D

0

CLR

0.05905

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree