Silkworm Genome Informatics Database

Gene

KWMTBOMO04976

Pre Gene Modal

BGIBMGA004635

Annotation

nucleolar_phosphoprotein_[Bombyx_mori]

Location

Bomo_Chr9(+):3921670-3924737 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.453 Nuclear Reliability : 1.929

CDS

ATGGAAGAAAACGTTGCGTTGGATTCTAGCAAACAAAAAAAGTTTATCAAATCCATTAAAGGATTGCAAAAAACTATAAAGAAGAAAAAAACGCAAGCGAAGGATCAGACCCCCGTCACCCCTAAAGTACAAGAAGAGAAAATAAAAAAAAAGAAACGTGTAAGAGGGCTTGTTTATTTGGGACATATCCCACATGGATTTTATGAGCATCAAATGACACAATACTTCAGTCAGTTTGGAGGTGTTTCTAACTGTAGAGTGATCAGATCAAGGCGCACTGGCAGATCTAAAGGATATGCATTTGTAGAGTTTCATGATCCTGCTGTCGCACAAATTGTTGCTGAGACCATGAATAATTATCTCATGGGGAAAAGATTGATAAAAGCTGCTTACATACCACCTGATAAACGAAGATGGGCCATGAGATACACATGGAACCCTCAGAACAATCCTGTCTTAAATACGAATCTGAAACTTAAAAAACAATACAACGCAGTAAAGAGTGATGCTGAAGAATTAAGAAGTGCTCGTAAATTAATGAAAAGTTTAAATAAAACAAAGAAAAAGTTAAAGGAATTGGGCATCAATTATGATTTCTTCATGCCCGTAGATATCCCAGAAGAATTAACAGAAATTGAGTAA

Protein

MEENVALDSSKQKKFIKSIKGLQKTIKKKKTQAKDQTPVTPKVQEEKIKKKKRVRGLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSDAEELRSARKLMKSLNKTKKKLKELGINYDFFMPVDIPEELTEIE

Uniprot

Q0ZAL4 A0A212FH56 A0A194QM34 A0A1E1W0R9 A0A194PF01 S4PI00 + More
A0A2H1V6L0 A0A0J7KRD1 A0A026X0G7 K7JAL1 A0A1Y1MPF7 F4X172 E2BLE1 A0A151XGW6 A0A158NUH8 A0A195ESC4 D6WB41 A0A195DTU3

Pubmed

22118469 26354079 23622113 24508170 30249741 20075255 + More
28004739 21719571 20798317 21347285 18362917 19820115

EMBL

DQ648525 ABG43000.1 AGBW02008537 OWR53068.1 KQ461198 KPJ06020.1 + More
GDQN01010525 JAT80529.1 KQ459606 KPI91279.1 GAIX01005610 JAA86950.1 ODYU01000922 SOQ36416.1 LBMM01004056 KMQ92856.1 KK107046 QOIP01000004 EZA61762.1 RLU24270.1 AAZX01002449 GEZM01027941 JAV86570.1 GL888527 EGI59808.1 GL449017 EFN83493.1 KQ982138 KYQ59643.1 ADTU01026471 KQ981989 KYN31150.1 KQ971311 EEZ98973.1 KQ980390 KYN16281.1

Proteomes

UP000007151 UP000053240 UP000053268 UP000036403 UP000053097 UP000279307 + More
UP000002358 UP000007755 UP000008237 UP000075809 UP000005205 UP000078541 UP000007266 UP000078492

PRIDE

Q0ZAL4

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

Q0ZAL4 A0A212FH56 A0A194QM34 A0A1E1W0R9 A0A194PF01 S4PI00 + More
A0A2H1V6L0 A0A0J7KRD1 A0A026X0G7 K7JAL1 A0A1Y1MPF7 F4X172 E2BLE1 A0A151XGW6 A0A158NUH8 A0A195ESC4 D6WB41 A0A195DTU3

PDB

5T9P E-value=1.37908e-14, Score=190

KEGG

733076 K14838 nucleolar protein 15 | (RefSeq) Nopp34; nucleolar phosphoprotein

GO

GO:0003723 GO:0003676 GO:1990904 GO:0005730 GO:0031491 GO:0000166 GO:0005524 GO:0006139 GO:0008026 GO:0003677 GO:0005515 GO:0016742 GO:0003824

Length:

213

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02883

Exp number, first 60 AAs:

0.00498

Total prob of N-in:

0.04353

outside

1 - 213

Pi

207.29989

Theta

182.810924

Tajima's D

0.289418

CLR

0.523233

CSRT

0.459527023648818

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics