Gene

KWMTBOMO04965

Pre Gene Modal

BGIBMGA007989

Annotation

PREDICTED:_testican-2_[Bombyx_mori]

Location

Bomo_Chr9(-):3592470-3622158      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.085 Nuclear   Reliability : 2.108

CDS

ATGTTTTTACACCGGGAAGTGGGAGGGAAGGCTCGGGAGGGCGAAGCGGCAGTGCGCGCCGTGCTGAGCTTAGCGCCGGGCGGTGGTGACGGCGAGATGCGCTTGTACGAGTGGCTGTTGGCAGCCGCGGTGCTGTTGGCGTTTTCGATAGCTTCAGCTCGACGCGCAGACCAGGACTTCGAGTTCGACGACGACTCGGATCCTGCTTCTTCTTCTACGAGTCGCGACTCTAATGTCGCTCACTCTCGCAGACCCAGAAGATATATTTACGACCCGCACAATTCCCTGTGCCATTCGCTGGTGTGTAAGAAGCGTGAGGTGTGTCTTCTCCGTGACGCTTTCACAGCTCTGTGCGCCACGAAGAAGGATATTATACGAAAAGGCGACGTAATAGTAACAGCAACTGCCAATAGCTGGGAAGCGCCGGCTAGAGATCGCGAAGATGACGAGGAAGATGTATTTTACGACAGTGCCGCCAGAGATACTGATGCAGATCTCGACAATGATGAGAATAAACCTGACCGCTGTGTGGGTTGTCCGGTGCGCGGTCGCGGCGAATTCCTCTGCGGTTCGGATAATCGCACGTATTCGTCGTTGTGCCGTCTGGATCTTCACAACTGCGTTCACCGTAACAAGAAACCGGTGACGTTGGCTTGCCGAGGCTTCTGTCCGTGTCCTTCGACGCCGCGCAGAAATCGTCGTCCACACCAACGACAGAGACCTACCAGACGAAACTTCAACGAATACGATGATGATTGGCGACGTAGGAAAATGGAATCTTCGCACAACGAAGTCCTTCCCGAGCGAACTTCCCGAAGACGTCAATCACAAGCCACTGAAGGCTGCGCTTTGGATAAAATGGCGAATCGTTTGCTCGACTGGTTCTCCGTTCTGATGGACGAGGCTGCTGAAAAAGCACCATCTGAAGAAGGCTTCCCGAATGATTGCAAACCAGAAGTACGCTGGATGTTTGCTCATCTGGATACGGATGGTGATGGAATACTGTCCGCTGACAACCTTTATTCCCTACGTCACGACGAACGCGAACGCTGTCTGCGACCGTTCCTATCGTCATGCGGAGGAGCTGGTGGTGACGTCACGCGTGCTGCATGGTGCGCGTGCCTCCGCCGCGCCGCCCGTCCCTGCACCGCGCTAGCACGTGCGCATCCTCAACCTCACGCTGGAGCCTACGTTCCGTCGTGCGACGCGCGCGGCTTCTACAGACCGCGGCAATGTCACGCGGCTCTGGGCGTGTGCTGGTGTGTGGACGCGCATGGCGTCGAGCTGCCGGGCTCGCGGACCAAGGGAGCACCTGCTTGTCCCGGCGAGAAACCCTCAGAGAACGACAGCAACAATAGTTCTGAAGATGCGGACGGAGCACCGGCTGATGATGAAGACGCCGACGGTAGCGGTGATCAGGAGATGCGCTTCTAA

Protein

MFLHREVGGKAREGEAAVRAVLSLAPGGGDGEMRLYEWLLAAAVLLAFSIASARRADQDFEFDDDSDPASSSTSRDSNVAHSRRPRRYIYDPHNSLCHSLVCKKREVCLLRDAFTALCATKKDIIRKGDVIVTATANSWEAPARDREDDEEDVFYDSAARDTDADLDNDENKPDRCVGCPVRGRGEFLCGSDNRTYSSLCRLDLHNCVHRNKKPVTLACRGFCPCPSTPRRNRRPHQRQRPTRRNFNEYDDDWRRRKMESSHNEVLPERTSRRRQSQATEGCALDKMANRLLDWFSVLMDEAAEKAPSEEGFPNDCKPEVRWMFAHLDTDGDGILSADNLYSLRHDERERCLRPFLSSCGGAGGDVTRAAWCACLRRAARPCTALARAHPQPHAGAYVPSCDARGFYRPRQCHAALGVCWCVDAHGVELPGSRTKGAPACPGEKPSENDSNNSSEDADGAPADDEDADGSGDQEMRF

Uniprot

A0A2W1BGE1   A0A212F0B8   A0A2S2QIF3   A0A2S2QCS1   A0A2H8TYC8   A0A158P440   + More
J9JXX4   V9IHQ2   A0A088ANF2   K7J4L6   A0A3L8DSG4   L7LWJ0   A0A224YQW9   A0A0L7RGJ5   A0A131YP92   L7M8E0   A0A3S3PEP3   A0A1E1X898   A0A2R5LJF0   A0A293LUQ1   A0A1Z5L1K3   T1K003  

Pubmed

28756777    22118469    21347285    20075255    30249741    25576852    + More
28797301    26830274    28503490    28528879   

EMBL

KZ150479    PZC70733.1    AGBW02011129    OWR47180.1    GGMS01008326    MBY77529.1    + More
GGMS01006300    MBY75503.1    GFXV01006727    MBW18532.1    ADTU01008426    ADTU01008427    ADTU01008428    ADTU01008429    ADTU01008430    ADTU01008431    ADTU01008432    ADTU01008433    ADTU01008434    ADTU01008435    ABLF02026155    ABLF02026157    ABLF02026163    JR046378    AEY60182.1    AAZX01002335    AAZX01002339    QOIP01000005    RLU23113.1    GACK01009835    JAA55199.1    GFPF01005096    MAA16242.1    KQ414596    KOC69985.1    GEDV01008307    JAP80250.1    GACK01004922    JAA60112.1    NCKU01001936    RWS10862.1    GFAC01003703    JAT95485.1    GGLE01005442    MBY09568.1    GFWV01006929    MAA31659.1    GFJQ02006059    JAW00911.1    CAEY01001131   

Proteomes

UP000007151    UP000005205    UP000007819    UP000005203    UP000002358    UP000279307    + More
UP000053825    UP000285301    UP000015104   

PRIDE

A0A088ANF2   

Pfam

PF07648   Kazal_2        + More
PF10591   SPARC_Ca_bdg
PF00086   Thyroglobulin_1

Interpro

IPR002048   EF_hand_dom        + More
IPR011992   EF-hand-dom_pair       
IPR019577   SPARC/Testican_Ca-bd-dom       
IPR002350   Kazal_dom       
IPR000716   Thyroglobulin_1       
IPR036058   Kazal_dom_sf       
IPR036857   Thyroglobulin_1_sf       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF100895   SSF100895        + More
SSF47473   SSF47473       
SSF57610   SSF57610       

Gene 3D

4.10.800.10    

CDD

cd00191  TY

ProteinModelPortal

A0A2W1BGE1   A0A212F0B8   A0A2S2QIF3   A0A2S2QCS1   A0A2H8TYC8   A0A158P440   + More
J9JXX4   V9IHQ2   A0A088ANF2   K7J4L6   A0A3L8DSG4   L7LWJ0   A0A224YQW9   A0A0L7RGJ5   A0A131YP92   L7M8E0   A0A3S3PEP3   A0A1E1X898   A0A2R5LJF0   A0A293LUQ1   A0A1Z5L1K3   T1K003  

PDB

1L3H     E-value=9.82734e-08,     Score=135

KEGG

101746693    K08136 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) | (RefSeq) testican-2

GO

GO:0005509   GO:0016874   GO:0005515   GO:0005578   GO:0007165   GO:0015074   GO:0007166   GO:0006032   GO:0016742   GO:0003824  

Length:

477

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.973479999999999

Exp number, first 60 AAs:

0.97289

Total prob of N-in:

0.04148

outside

1  -  477

 

 

Pi

208.641862

Theta

174.604785

Tajima's D

0.187274

CLR

0.852982

CSRT

0.423878806059697

Interpretation

Uncertain